Wall clock time and date at job start Wed Apr 1 2020 04:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 N 1.46499 * 109.47658 * 184.99947 * 4 2 1 6 6 C 1.34782 * 120.00273 * 180.02562 * 5 4 2 7 7 O 1.21337 * 119.99932 * 0.02562 * 6 5 4 8 8 C 1.49446 * 119.99728 * 180.02562 * 6 5 4 9 9 O 1.21351 * 120.00385 * 359.97438 * 8 6 5 10 10 N 1.34782 * 119.99728 * 180.02562 * 8 6 5 11 11 C 1.46496 * 119.99778 * 180.02562 * 10 8 6 12 12 C 1.53005 * 109.47116 * 180.02562 * 11 10 8 13 13 C 1.50700 * 109.47102 * 179.97438 * 12 11 10 14 14 H 1.08002 * 120.00302 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99410 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00754 * 0.02562 * 15 13 12 17 17 Si 1.86810 * 119.99630 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46582 * 60.00498 * 17 15 13 19 19 H 1.48495 * 109.46943 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47328 * 300.00706 * 17 15 13 21 21 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 22 22 C 1.46900 * 110.99736 * 58.95813 * 21 2 1 23 23 C 1.46895 * 111.00186 * 295.00225 * 21 2 1 24 24 C 1.50703 * 109.46874 * 189.99595 * 23 21 2 25 25 C 1.38233 * 120.00153 * 269.72578 * 24 23 21 26 26 C 1.38239 * 119.99804 * 179.76946 * 25 24 23 27 27 C 1.38236 * 120.00066 * 0.50949 * 26 25 24 28 28 C 1.38239 * 119.99878 * 359.74068 * 27 26 25 29 29 C 1.38233 * 119.99808 * 0.02562 * 28 27 26 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 33 33 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 34 34 H 1.09004 * 109.47313 * 64.99993 * 4 2 1 35 35 H 0.97002 * 119.99938 * 0.02562 * 5 4 2 36 36 H 0.96993 * 119.99847 * 359.97438 * 10 8 6 37 37 H 1.09000 * 109.47190 * 299.99601 * 11 10 8 38 38 H 1.09003 * 109.47621 * 59.99849 * 11 10 8 39 39 H 1.09000 * 109.46692 * 299.99816 * 12 11 10 40 40 H 1.08994 * 109.46972 * 59.99627 * 12 11 10 41 41 H 0.96996 * 120.00335 * 179.97438 * 16 15 13 42 42 H 1.08997 * 109.47292 * 59.99623 * 22 21 2 43 43 H 1.09002 * 109.47267 * 179.97438 * 22 21 2 44 44 H 1.09000 * 109.47210 * 300.00139 * 22 21 2 45 45 H 1.08999 * 109.47066 * 309.99575 * 23 21 2 46 46 H 1.09001 * 109.47511 * 70.00176 * 23 21 2 47 47 H 1.07997 * 120.00342 * 359.97438 * 25 24 23 48 48 H 1.08002 * 119.99685 * 180.23621 * 26 25 24 49 49 H 1.08001 * 119.99924 * 179.72982 * 27 26 25 50 50 H 1.08001 * 119.99698 * 179.97438 * 28 27 26 51 51 H 1.08000 * 119.99812 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 7 3.5001 -0.8264 -1.1905 6 6 4.1732 -1.4283 -2.1911 7 8 3.5699 -1.8827 -3.1407 8 6 5.6625 -1.5360 -2.1309 9 8 6.2659 -1.0811 -1.1814 10 7 6.3357 -2.1375 -3.1318 11 6 7.7956 -2.2436 -3.0725 12 6 8.3059 -2.9629 -4.3228 13 6 9.8077 -3.0715 -4.2621 14 1 10.3446 -2.6682 -3.4162 15 6 10.4962 -3.6867 -5.2860 16 7 9.8425 -4.1783 -6.3158 17 14 12.3580 -3.8207 -5.2112 18 1 12.7507 -4.5888 -4.0025 19 1 12.8531 -4.5189 -6.4246 20 1 12.9500 -2.4603 -5.1472 21 7 2.0196 -0.6924 1.1995 22 6 1.5283 -2.0760 1.2460 23 6 1.6487 0.0393 2.4181 24 6 2.3678 -0.5571 3.6006 25 6 1.7822 -1.5810 4.3213 26 6 2.4440 -2.1312 5.4031 27 6 3.6868 -1.6503 5.7705 28 6 4.2702 -0.6228 5.0529 29 6 3.6105 -0.0760 3.9682 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.6054 -1.7198 -1.2951 34 1 1.7517 -0.1584 -2.1369 35 1 3.9824 -0.4628 -0.4315 36 1 5.8534 -2.5007 -3.8909 37 1 8.2308 -1.2453 -3.0251 38 1 8.0833 -2.8078 -2.1853 39 1 7.8707 -3.9612 -4.3706 40 1 8.0182 -2.3983 -5.2096 41 1 10.3270 -4.6107 -7.0363 42 1 1.8762 -2.6150 0.3648 43 1 1.9060 -2.5657 2.1436 44 1 0.4385 -2.0742 1.2639 45 1 1.9297 1.0871 2.3124 46 1 0.5722 -0.0344 2.5727 47 1 0.8090 -1.9534 4.0373 48 1 1.9881 -2.9337 5.9638 49 1 4.2020 -2.0772 6.6184 50 1 5.2411 -0.2469 5.3403 51 1 4.0661 0.7270 3.4078 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322749942.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:45 Heat of formation + Delta-G solvation = -68.720807 kcal Electronic energy + Delta-G solvation = -29713.740898 eV Core-core repulsion = 25611.914160 eV Total energy + Delta-G solvation = -4101.826738 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.68752 -40.59196 -39.70097 -38.87616 -36.86856 -35.67243 -34.77929 -33.24295 -31.77219 -31.67969 -31.02702 -28.56413 -27.95658 -26.96438 -25.51694 -24.44539 -23.36815 -22.77816 -22.07728 -21.38366 -20.83119 -19.38618 -18.56309 -17.80360 -17.66232 -17.57402 -16.94134 -16.75574 -16.49076 -16.33947 -16.25846 -15.88543 -15.75047 -15.12634 -15.09488 -14.84032 -14.60098 -14.30011 -14.22904 -14.22108 -13.92366 -13.46674 -13.40962 -13.25957 -13.02220 -12.92302 -12.91668 -12.75573 -12.53983 -12.49989 -12.38676 -12.26455 -11.85341 -11.77395 -11.70263 -11.67902 -11.45268 -10.66394 -10.60510 -10.26948 -10.16086 -9.75496 -9.66998 -9.21014 -8.22808 -6.34226 0.37403 0.46455 0.55993 1.37504 1.44320 1.45914 1.54172 2.17138 2.40606 2.66779 2.81350 3.11825 3.22192 3.51602 3.67289 3.84298 3.99645 4.08558 4.20456 4.27983 4.29914 4.36872 4.39769 4.40300 4.45562 4.58398 4.60313 4.66917 4.67770 4.76951 4.80019 4.81540 4.86464 5.02815 5.09872 5.10430 5.17390 5.19481 5.21326 5.32026 5.42768 5.55219 5.60550 5.68216 5.73723 5.76069 5.98751 6.05859 6.08038 6.13494 6.18781 6.42255 6.75592 6.81376 6.98416 7.35152 8.88999 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011917 B = 0.001964 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.963439 B =14252.389239 C =16055.588217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.074 3.926 3 H 0.104 0.896 4 C 0.123 3.877 5 N -0.673 5.673 6 C 0.511 3.489 7 O -0.548 6.548 8 C 0.498 3.502 9 O -0.548 6.548 10 N -0.690 5.690 11 C 0.138 3.862 12 C 0.019 3.981 13 C -0.546 4.546 14 H 0.065 0.935 15 C 0.004 3.996 16 N -0.928 5.928 17 Si 0.968 3.032 18 H -0.267 1.267 19 H -0.283 1.283 20 H -0.267 1.267 21 N -0.540 5.540 22 C 0.017 3.983 23 C 0.098 3.902 24 C -0.086 4.086 25 C -0.121 4.121 26 C -0.132 4.132 27 C -0.133 4.133 28 C -0.135 4.135 29 C -0.113 4.113 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.422 0.578 36 H 0.414 0.586 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.007 0.993 40 H 0.008 0.992 41 H 0.266 0.734 42 H 0.056 0.944 43 H 0.065 0.935 44 H 0.047 0.953 45 H 0.092 0.908 46 H 0.059 0.941 47 H 0.131 0.869 48 H 0.135 0.865 49 H 0.133 0.867 50 H 0.129 0.871 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.671 9.785 22.517 34.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.034 4.034 3 H 0.122 0.878 4 C 0.000 4.000 5 N -0.326 5.326 6 C 0.291 3.709 7 O -0.426 6.426 8 C 0.279 3.721 9 O -0.427 6.427 10 N -0.341 5.341 11 C 0.016 3.984 12 C -0.018 4.018 13 C -0.584 4.584 14 H 0.083 0.917 15 C -0.194 4.194 16 N -0.567 5.567 17 Si 0.792 3.208 18 H -0.192 1.192 19 H -0.208 1.208 20 H -0.191 1.191 21 N -0.264 5.264 22 C -0.131 4.131 23 C -0.029 4.029 24 C -0.087 4.087 25 C -0.139 4.139 26 C -0.150 4.150 27 C -0.151 4.151 28 C -0.153 4.153 29 C -0.132 4.132 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.260 0.740 36 H 0.250 0.750 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.025 0.975 40 H 0.026 0.974 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.084 0.916 44 H 0.065 0.935 45 H 0.110 0.890 46 H 0.077 0.923 47 H 0.148 0.852 48 H 0.153 0.847 49 H 0.151 0.849 50 H 0.147 0.853 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -23.147 9.695 22.326 33.589 hybrid contribution 0.293 -0.445 -0.293 0.608 sum -22.855 9.250 22.032 33.066 Atomic orbital electron populations 1.22339 0.94536 1.03082 1.03876 1.21989 0.94756 0.98648 0.88042 0.87827 1.21742 0.77850 1.01647 0.98796 1.45608 1.08569 1.56152 1.22229 1.19923 0.87591 0.79713 0.83652 1.90744 1.69834 1.48140 1.33882 1.20423 0.88963 0.79533 0.83169 1.90719 1.70415 1.48120 1.33440 1.46063 1.08897 1.56300 1.22876 1.21460 0.76781 1.00436 0.99756 1.19170 0.95770 0.94869 0.92027 1.21420 0.92578 1.38184 1.06212 0.91727 1.25930 1.03974 0.94719 0.94817 1.70068 1.37881 1.38992 1.09802 0.85452 0.78891 0.78732 0.77691 1.19196 1.20819 1.19150 1.62145 1.60002 1.02656 1.01620 1.22483 0.98699 0.89559 1.02395 1.21053 0.97571 0.97856 0.86407 1.19888 0.95271 0.96956 0.96551 1.21251 1.00504 0.96378 0.95763 1.21399 0.95517 1.00454 0.97642 1.21430 0.96080 0.97117 1.00458 1.21424 1.00498 0.97273 0.96137 1.21238 0.94685 1.00457 0.96779 0.91942 0.90606 0.90783 0.91280 0.89884 0.73981 0.75007 0.92067 0.92220 0.97488 0.97391 0.92559 0.92550 0.91598 0.93496 0.88997 0.92325 0.85156 0.84675 0.84939 0.85289 0.85581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.31 8.50 71.98 0.61 -0.70 16 2 C 0.07 0.80 2.50 44.91 0.11 0.91 16 3 H 0.10 0.97 8.03 -2.39 -0.02 0.95 16 4 C 0.12 2.01 4.69 86.38 0.40 2.41 16 5 N -0.67 -15.18 5.38 -464.43 -2.50 -17.68 16 6 C 0.51 15.42 7.89 87.27 0.69 16.11 16 7 O -0.55 -18.59 16.48 -3.21 -0.05 -18.64 16 8 C 0.50 17.62 7.89 87.27 0.69 18.31 16 9 O -0.55 -21.20 16.48 -3.25 -0.05 -21.26 16 10 N -0.69 -26.09 5.55 -464.40 -2.58 -28.66 16 11 C 0.14 5.97 5.61 86.38 0.48 6.45 16 12 C 0.02 0.98 5.09 29.85 0.15 1.14 16 13 C -0.55 -30.50 9.11 25.60 0.23 -30.27 16 14 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 15 C 0.00 0.24 5.46 84.65 0.46 0.71 16 16 N -0.93 -55.30 13.29 21.45 0.28 -55.02 16 17 Si 0.97 43.72 29.54 68.60 2.03 45.75 16 18 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 20 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 21 N -0.54 -7.02 4.18 -901.64 -3.77 -10.79 16 22 C 0.02 0.23 8.48 127.69 1.08 1.31 16 23 C 0.10 1.06 4.56 85.56 0.39 1.45 16 24 C -0.09 -1.26 4.88 -19.87 -0.10 -1.35 16 25 C -0.12 -1.66 7.92 22.27 0.18 -1.48 16 26 C -0.13 -1.86 10.05 22.27 0.22 -1.64 16 27 C -0.13 -2.01 10.05 22.27 0.22 -1.78 16 28 C -0.14 -2.22 10.05 22.27 0.22 -1.99 16 29 C -0.11 -1.86 9.70 22.27 0.22 -1.64 16 30 H 0.06 0.51 6.38 -2.39 -0.02 0.49 16 31 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.07 0.43 6.75 -2.38 -0.02 0.41 16 33 H 0.07 1.23 6.70 -2.39 -0.02 1.21 16 34 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.42 9.39 7.61 -92.71 -0.71 8.68 16 36 H 0.41 15.08 7.94 -92.71 -0.74 14.34 16 37 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 38 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 39 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 40 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 41 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 42 H 0.06 0.96 6.44 -2.39 -0.02 0.94 16 43 H 0.07 1.03 5.91 -2.39 -0.01 1.01 16 44 H 0.05 0.49 6.28 -2.39 -0.01 0.48 16 45 H 0.09 0.86 7.94 -2.39 -0.02 0.84 16 46 H 0.06 0.50 6.88 -2.39 -0.02 0.48 16 47 H 0.13 1.34 8.00 -2.91 -0.02 1.32 16 48 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 49 H 0.13 1.53 8.06 -2.91 -0.02 1.50 16 50 H 0.13 1.78 8.06 -2.91 -0.02 1.75 16 51 H 0.13 1.88 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -68.16 416.64 -0.86 -69.02 By element: Atomic # 1 Polarization: 29.84 SS G_CDS: -0.49 Total: 29.34 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: 6.28 Total: 7.95 kcal Atomic # 7 Polarization: -103.59 SS G_CDS: -8.56 Total: -112.15 kcal Atomic # 8 Polarization: -39.80 SS G_CDS: -0.11 Total: -39.90 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -68.16 -0.86 -69.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322749942.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.296 kcal (2) G-P(sol) polarization free energy of solvation -68.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds