Wall clock time and date at job start Wed Apr 1 2020 04:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.08991 * 109.46676 * 2 1 4 4 O 1.42898 * 109.47188 * 120.00050 * 2 1 3 5 5 C 1.35912 * 116.99852 * 274.72600 * 4 2 1 6 6 C 1.39143 * 120.47597 * 354.73878 * 5 4 2 7 7 C 1.38531 * 118.37603 * 180.02562 * 6 5 4 8 8 C 1.38254 * 119.22355 * 359.97438 * 7 6 5 9 9 N 1.31854 * 120.88223 * 0.02562 * 8 7 6 10 10 C 1.31834 * 121.78479 * 359.70276 * 9 8 7 11 11 C 1.50697 * 109.47040 * 240.00057 * 2 1 3 12 12 O 1.21280 * 119.99901 * 244.99743 * 11 2 1 13 13 N 1.34776 * 120.00076 * 64.99772 * 11 2 1 14 14 C 1.46497 * 120.00103 * 179.97438 * 13 11 2 15 15 C 1.53002 * 109.47286 * 179.97438 * 14 13 11 16 16 C 1.52993 * 109.49799 * 300.00389 * 15 14 13 17 17 C 1.53045 * 109.49614 * 179.97438 * 15 14 13 18 18 C 1.53101 * 109.49844 * 178.68876 * 17 15 14 19 19 C 1.53195 * 109.33538 * 61.34455 * 18 17 15 20 20 N 1.46928 * 108.77020 * 305.36136 * 19 18 17 21 21 C 1.36933 * 120.62888 * 233.62288 * 20 19 18 22 22 H 1.08011 * 119.99567 * 149.10776 * 21 20 19 23 23 C 1.38811 * 120.00667 * 329.11705 * 21 20 19 24 24 N 1.31613 * 120.00375 * 162.00925 * 23 21 20 25 25 Si 1.86805 * 119.99424 * 342.00881 * 23 21 20 26 26 H 1.48502 * 109.47085 * 90.54812 * 25 23 21 27 27 H 1.48504 * 109.46720 * 210.54444 * 25 23 21 28 28 H 1.48498 * 109.47111 * 330.54464 * 25 23 21 29 29 C 1.46929 * 118.73828 * 53.61050 * 20 19 18 30 30 H 1.08992 * 109.46769 * 299.99883 * 1 2 3 31 31 H 1.09001 * 109.46930 * 60.00411 * 1 2 3 32 32 H 1.09000 * 109.46552 * 180.02562 * 1 2 3 33 33 H 1.08004 * 120.81017 * 359.97438 * 6 5 4 34 34 H 1.08005 * 120.38911 * 180.02562 * 7 6 5 35 35 H 1.07992 * 119.56022 * 179.97438 * 8 7 6 36 36 H 1.08004 * 119.66356 * 180.28988 * 10 9 8 37 37 H 0.97000 * 120.00092 * 0.02562 * 13 11 2 38 38 H 1.09005 * 109.46722 * 60.00648 * 14 13 11 39 39 H 1.08999 * 109.47663 * 300.00597 * 14 13 11 40 40 H 1.09000 * 109.47048 * 60.00120 * 16 15 14 41 41 H 1.09005 * 109.47120 * 179.97438 * 16 15 14 42 42 H 1.08999 * 109.47428 * 299.99567 * 16 15 14 43 43 H 1.08996 * 109.46024 * 298.67400 * 17 15 14 44 44 H 1.08998 * 109.45693 * 58.63338 * 17 15 14 45 45 H 1.09001 * 109.49330 * 301.38199 * 18 17 15 46 46 H 1.09005 * 109.49026 * 181.30077 * 18 17 15 47 47 H 1.09004 * 109.58799 * 185.57782 * 19 18 17 48 48 H 1.09001 * 109.70094 * 65.21862 * 19 18 17 49 49 H 0.97005 * 120.00023 * 179.97438 * 24 23 21 50 50 H 1.09000 * 109.58163 * 186.59850 * 29 20 19 51 51 H 1.09004 * 109.69961 * 66.24641 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.1181 0.0641 2.3028 6 6 1.8825 1.4352 2.2798 7 6 2.0092 2.1449 3.4628 8 6 2.3620 1.4731 4.6185 9 7 2.5783 0.1725 4.6060 10 6 2.4633 -0.5401 3.5028 11 6 2.0324 -0.7104 -1.2305 12 8 2.6531 -1.7466 -1.1215 13 7 1.7919 -0.1942 -2.4520 14 6 2.2807 -0.8845 -3.6481 15 6 1.8752 -0.0947 -4.8943 16 6 0.3505 0.0143 -4.9560 17 6 2.3862 -0.8151 -6.1442 18 6 1.9524 -0.0422 -7.3926 19 6 2.5649 1.3615 -7.3585 20 7 2.1967 2.0073 -6.0911 21 6 1.5944 3.2370 -6.0839 22 1 0.9011 3.4941 -5.2966 23 6 1.8746 4.1531 -7.0884 24 7 1.0648 5.1696 -7.2967 25 14 3.4011 3.9433 -8.1445 26 1 3.0678 3.1273 -9.3396 27 1 3.8911 5.2769 -8.5766 28 1 4.4577 3.2590 -7.3568 29 6 2.4869 1.3084 -4.8317 30 1 -0.3632 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 1.6085 1.9342 1.3619 34 1 1.8335 3.2104 3.4822 35 1 2.4627 2.0210 5.5436 36 1 2.6439 -1.6045 3.5327 37 1 1.2958 0.6348 -2.5391 38 1 1.8464 -1.8832 -3.6942 39 1 3.3670 -0.9624 -3.6044 40 1 -0.0134 0.5281 -4.0662 41 1 0.0621 0.5774 -5.8437 42 1 -0.0837 -0.9844 -5.0020 43 1 3.4742 -0.8711 -6.1118 44 1 1.9717 -1.8226 -6.1775 45 1 0.8654 0.0355 -7.4128 46 1 2.2966 -0.5677 -8.2835 47 1 2.1805 1.9484 -8.1928 48 1 3.6502 1.2907 -7.4308 49 1 1.2609 5.8099 -7.9985 50 1 2.0511 1.8602 -3.9988 51 1 3.5655 1.2311 -4.6943 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324961181.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:06 Heat of formation + Delta-G solvation = -14.047797 kcal Electronic energy + Delta-G solvation = -31123.902286 eV Core-core repulsion = 27024.446348 eV Total energy + Delta-G solvation = -4099.455938 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.17164 -40.08192 -38.96371 -38.01774 -35.21716 -33.52792 -32.61126 -32.44887 -31.24801 -30.86154 -30.25358 -26.92196 -26.37192 -25.42886 -24.98647 -23.94309 -23.06400 -22.07684 -21.25535 -20.40139 -18.83719 -18.41014 -17.70182 -17.04133 -16.82282 -16.46329 -16.06515 -15.84764 -15.37937 -15.17365 -14.71614 -14.53202 -14.22736 -14.13985 -14.04088 -13.76404 -13.67653 -13.54979 -13.29904 -12.85274 -12.76548 -12.62926 -12.48554 -12.40350 -12.08704 -11.95725 -11.61678 -11.50065 -11.34698 -11.29388 -10.75482 -10.62177 -10.54626 -10.16367 -10.09737 -10.00418 -9.92155 -9.82668 -9.66658 -9.53750 -9.12734 -8.75110 -8.68242 -7.00249 -6.03688 -3.43701 0.80390 0.89749 2.28254 2.41210 3.26052 3.32432 3.42695 3.45385 3.47806 4.13857 4.21877 4.36164 4.39983 4.45482 4.46841 4.57853 4.71785 4.76417 4.89298 5.01744 5.06762 5.10984 5.15595 5.20396 5.31375 5.39955 5.54188 5.62416 5.63863 5.70171 5.70549 5.72214 5.81969 5.86327 5.94185 6.04865 6.12450 6.15519 6.25480 6.29810 6.33810 6.49204 6.53314 6.55616 6.65475 6.68356 6.83195 6.93432 7.35144 7.63529 7.89908 8.04013 8.24140 8.85020 9.63098 10.02417 11.12129 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014486 B = 0.002443 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.471060 B =11459.718510 C =12635.102489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.062 3.938 3 H 0.101 0.899 4 O -0.277 6.277 5 C 0.084 3.916 6 C -0.170 4.170 7 C -0.128 4.128 8 C 0.054 3.946 9 N -0.447 5.447 10 C 0.075 3.925 11 C 0.518 3.482 12 O -0.521 6.521 13 N -0.716 5.716 14 C 0.135 3.865 15 C -0.093 4.093 16 C -0.131 4.131 17 C -0.096 4.096 18 C -0.136 4.136 19 C 0.123 3.877 20 N -0.602 5.602 21 C -0.261 4.261 22 H 0.083 0.917 23 C 0.027 3.973 24 N -0.909 5.909 25 Si 0.886 3.114 26 H -0.288 1.288 27 H -0.304 1.304 28 H -0.271 1.271 29 C 0.161 3.839 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.143 0.857 34 H 0.139 0.861 35 H 0.158 0.842 36 H 0.165 0.835 37 H 0.404 0.596 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.044 0.956 41 H 0.078 0.922 42 H 0.042 0.958 43 H 0.058 0.942 44 H 0.054 0.946 45 H 0.069 0.931 46 H 0.054 0.946 47 H 0.072 0.928 48 H 0.024 0.976 49 H 0.263 0.737 50 H 0.058 0.942 51 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.218 -9.346 15.676 18.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.002 3.998 3 H 0.118 0.882 4 O -0.188 6.188 5 C 0.036 3.964 6 C -0.197 4.197 7 C -0.148 4.148 8 C -0.103 4.103 9 N -0.156 5.156 10 C -0.084 4.084 11 C 0.301 3.699 12 O -0.396 6.396 13 N -0.370 5.370 14 C 0.011 3.989 15 C -0.095 4.095 16 C -0.189 4.189 17 C -0.134 4.134 18 C -0.175 4.175 19 C -0.002 4.002 20 N -0.325 5.325 21 C -0.389 4.389 22 H 0.101 0.899 23 C -0.173 4.173 24 N -0.552 5.552 25 Si 0.716 3.284 26 H -0.215 1.215 27 H -0.232 1.232 28 H -0.196 1.196 29 C 0.035 3.965 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.161 0.839 34 H 0.157 0.843 35 H 0.175 0.825 36 H 0.182 0.818 37 H 0.241 0.759 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.063 0.937 41 H 0.097 0.903 42 H 0.062 0.938 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.087 0.913 46 H 0.072 0.928 47 H 0.090 0.910 48 H 0.041 0.959 49 H 0.073 0.927 50 H 0.076 0.924 51 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -0.526 -10.546 16.389 19.496 hybrid contribution 0.324 1.181 -1.664 2.066 sum -0.202 -9.365 14.725 17.452 Atomic orbital electron populations 1.22300 0.92138 1.04589 1.04118 1.22305 0.96032 0.97353 0.84139 0.88172 1.86249 1.80433 1.36547 1.15564 1.20266 0.97060 0.90903 0.88141 1.21804 1.04299 0.93226 1.00336 1.22031 0.98530 1.01500 0.92691 1.22694 0.98705 0.90418 0.98480 1.67746 1.11854 1.08187 1.27849 1.22248 1.00032 1.00912 0.85179 1.19911 0.80306 0.85596 0.84060 1.90742 1.39465 1.23038 1.86395 1.45963 1.57715 1.28103 1.05222 1.21481 0.99274 0.95509 0.82626 1.21341 0.97298 0.97795 0.93097 1.21784 0.93584 1.00542 1.02948 1.21375 1.00235 0.97726 0.94089 1.22058 1.01775 0.97422 0.96232 1.21372 0.96486 0.92308 0.90033 1.44260 1.70795 1.18315 0.99151 1.18836 1.19030 0.88666 1.12398 0.89923 1.25348 0.97806 0.95518 0.98611 1.69801 1.36340 1.15808 1.33208 0.86912 0.85536 0.75673 0.80231 1.21515 1.23228 1.19639 1.20927 0.96314 0.89647 0.89635 0.90778 0.89726 0.90477 0.83936 0.84280 0.82462 0.81827 0.75924 0.91499 0.91409 0.93651 0.90274 0.93845 0.92349 0.92679 0.91274 0.92779 0.91022 0.95859 0.92703 0.92361 0.95883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.34 9.37 37.16 0.35 -0.99 16 2 C 0.06 0.61 2.67 -27.88 -0.07 0.54 16 3 H 0.10 0.80 5.82 -51.93 -0.30 0.50 16 4 O -0.28 -3.29 9.35 -39.33 -0.37 -3.66 16 5 C 0.08 0.89 6.60 -39.07 -0.26 0.63 16 6 C -0.17 -1.46 8.72 -39.14 -0.34 -1.80 16 7 C -0.13 -0.96 10.11 -39.47 -0.40 -1.36 16 8 C 0.05 0.45 11.18 -17.54 -0.20 0.26 16 9 N -0.45 -4.79 10.35 -13.13 -0.14 -4.92 16 10 C 0.08 0.80 11.14 -17.38 -0.19 0.60 16 11 C 0.52 6.59 7.18 -10.99 -0.08 6.51 16 12 O -0.52 -8.79 16.51 -14.30 -0.24 -9.02 16 13 N -0.72 -8.21 4.96 -60.29 -0.30 -8.51 16 14 C 0.13 1.70 4.57 -4.04 -0.02 1.69 16 15 C -0.09 -1.30 0.53 -154.39 -0.08 -1.38 16 16 C -0.13 -1.81 7.81 37.15 0.29 -1.52 16 17 C -0.10 -1.34 4.72 -26.66 -0.13 -1.47 16 18 C -0.14 -2.18 5.74 -26.58 -0.15 -2.33 16 19 C 0.12 2.50 4.20 -3.71 -0.02 2.49 16 20 N -0.60 -12.95 2.16 -172.31 -0.37 -13.33 16 21 C -0.26 -6.73 10.02 -15.06 -0.15 -6.88 16 22 H 0.08 2.26 8.06 -52.48 -0.42 1.84 16 23 C 0.03 0.73 5.25 -17.43 -0.09 0.64 16 24 N -0.91 -26.68 13.97 55.49 0.78 -25.91 16 25 Si 0.89 21.66 24.34 -169.99 -4.14 17.53 16 26 H -0.29 -6.80 6.59 56.52 0.37 -6.42 16 27 H -0.30 -7.65 7.11 56.52 0.40 -7.24 16 28 H -0.27 -6.56 6.71 56.52 0.38 -6.18 16 29 C 0.16 2.79 4.94 -3.71 -0.02 2.77 16 30 H 0.07 0.50 7.74 -51.93 -0.40 0.10 16 31 H 0.08 0.54 7.93 -51.93 -0.41 0.13 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.14 0.96 5.95 -52.48 -0.31 0.65 16 34 H 0.14 0.68 8.06 -52.48 -0.42 0.26 16 35 H 0.16 0.89 8.06 -52.49 -0.42 0.47 16 36 H 0.16 1.52 8.06 -52.48 -0.42 1.10 16 37 H 0.40 4.07 6.01 -40.82 -0.25 3.82 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.04 0.57 6.86 -51.93 -0.36 0.22 16 41 H 0.08 1.32 5.97 -51.93 -0.31 1.01 16 42 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.07 1.14 6.33 -51.93 -0.33 0.81 16 46 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.07 1.61 4.73 -51.93 -0.25 1.37 16 48 H 0.02 0.48 7.03 -51.93 -0.37 0.11 16 49 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 50 H 0.06 0.97 6.84 -51.93 -0.36 0.61 16 51 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 393.68 15.07 5.93 5.93 Total: -1.00 -32.79 393.68 -8.29 -41.08 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -7.89 Total: 2.44 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -1.56 Total: -1.62 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: -0.03 Total: -52.67 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: -0.60 Total: -12.69 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.14 Total: 17.53 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.79 -8.29 -41.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324961181.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.031 kcal (2) G-P(sol) polarization free energy of solvation -32.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds