Wall clock time and date at job start Wed Apr 1 2020 04:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.08991 * 109.46676 * 2 1 4 4 O 1.42898 * 109.47188 * 120.00050 * 2 1 3 5 5 C 1.35912 * 116.99852 * 274.72600 * 4 2 1 6 6 C 1.39143 * 120.47597 * 354.73878 * 5 4 2 7 7 C 1.38531 * 118.37603 * 180.02562 * 6 5 4 8 8 C 1.38254 * 119.22355 * 359.97438 * 7 6 5 9 9 N 1.31854 * 120.88223 * 0.02562 * 8 7 6 10 10 C 1.31834 * 121.78479 * 359.70276 * 9 8 7 11 11 C 1.50697 * 109.47040 * 240.00057 * 2 1 3 12 12 O 1.21280 * 119.99901 * 244.99743 * 11 2 1 13 13 N 1.34776 * 120.00076 * 64.99772 * 11 2 1 14 14 C 1.46497 * 120.00103 * 179.97438 * 13 11 2 15 15 C 1.53002 * 109.47286 * 179.97438 * 14 13 11 16 16 C 1.52993 * 109.49799 * 300.00389 * 15 14 13 17 17 C 1.53045 * 109.49614 * 179.97438 * 15 14 13 18 18 C 1.53101 * 109.49844 * 178.68876 * 17 15 14 19 19 C 1.53195 * 109.33538 * 61.34455 * 18 17 15 20 20 N 1.46928 * 108.77020 * 305.36136 * 19 18 17 21 21 C 1.36933 * 120.62888 * 233.62288 * 20 19 18 22 22 H 1.08011 * 119.99567 * 149.10776 * 21 20 19 23 23 C 1.38811 * 120.00667 * 329.11705 * 21 20 19 24 24 N 1.31613 * 120.00375 * 162.00925 * 23 21 20 25 25 Si 1.86805 * 119.99424 * 342.00881 * 23 21 20 26 26 H 1.48502 * 109.47085 * 90.54812 * 25 23 21 27 27 H 1.48504 * 109.46720 * 210.54444 * 25 23 21 28 28 H 1.48498 * 109.47111 * 330.54464 * 25 23 21 29 29 C 1.46929 * 118.73828 * 53.61050 * 20 19 18 30 30 H 1.08992 * 109.46769 * 299.99883 * 1 2 3 31 31 H 1.09001 * 109.46930 * 60.00411 * 1 2 3 32 32 H 1.09000 * 109.46552 * 180.02562 * 1 2 3 33 33 H 1.08004 * 120.81017 * 359.97438 * 6 5 4 34 34 H 1.08005 * 120.38911 * 180.02562 * 7 6 5 35 35 H 1.07992 * 119.56022 * 179.97438 * 8 7 6 36 36 H 1.08004 * 119.66356 * 180.28988 * 10 9 8 37 37 H 0.97000 * 120.00092 * 0.02562 * 13 11 2 38 38 H 1.09005 * 109.46722 * 60.00648 * 14 13 11 39 39 H 1.08999 * 109.47663 * 300.00597 * 14 13 11 40 40 H 1.09000 * 109.47048 * 60.00120 * 16 15 14 41 41 H 1.09005 * 109.47120 * 179.97438 * 16 15 14 42 42 H 1.08999 * 109.47428 * 299.99567 * 16 15 14 43 43 H 1.08996 * 109.46024 * 298.67400 * 17 15 14 44 44 H 1.08998 * 109.45693 * 58.63338 * 17 15 14 45 45 H 1.09001 * 109.49330 * 301.38199 * 18 17 15 46 46 H 1.09005 * 109.49026 * 181.30077 * 18 17 15 47 47 H 1.09004 * 109.58799 * 185.57782 * 19 18 17 48 48 H 1.09001 * 109.70094 * 65.21862 * 19 18 17 49 49 H 0.97005 * 120.00023 * 179.97438 * 24 23 21 50 50 H 1.09000 * 109.58163 * 186.59850 * 29 20 19 51 51 H 1.09004 * 109.69961 * 66.24641 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.1181 0.0641 2.3028 6 6 1.8825 1.4352 2.2798 7 6 2.0092 2.1449 3.4628 8 6 2.3620 1.4731 4.6185 9 7 2.5783 0.1725 4.6060 10 6 2.4633 -0.5401 3.5028 11 6 2.0324 -0.7104 -1.2305 12 8 2.6531 -1.7466 -1.1215 13 7 1.7919 -0.1942 -2.4520 14 6 2.2807 -0.8845 -3.6481 15 6 1.8752 -0.0947 -4.8943 16 6 0.3505 0.0143 -4.9560 17 6 2.3862 -0.8151 -6.1442 18 6 1.9524 -0.0422 -7.3926 19 6 2.5649 1.3615 -7.3585 20 7 2.1967 2.0073 -6.0911 21 6 1.5944 3.2370 -6.0839 22 1 0.9011 3.4941 -5.2966 23 6 1.8746 4.1531 -7.0884 24 7 1.0648 5.1696 -7.2967 25 14 3.4011 3.9433 -8.1445 26 1 3.0678 3.1273 -9.3396 27 1 3.8911 5.2769 -8.5766 28 1 4.4577 3.2590 -7.3568 29 6 2.4869 1.3084 -4.8317 30 1 -0.3632 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 1.6085 1.9342 1.3619 34 1 1.8335 3.2104 3.4822 35 1 2.4627 2.0210 5.5436 36 1 2.6439 -1.6045 3.5327 37 1 1.2958 0.6348 -2.5391 38 1 1.8464 -1.8832 -3.6942 39 1 3.3670 -0.9624 -3.6044 40 1 -0.0134 0.5281 -4.0662 41 1 0.0621 0.5774 -5.8437 42 1 -0.0837 -0.9844 -5.0020 43 1 3.4742 -0.8711 -6.1118 44 1 1.9717 -1.8226 -6.1775 45 1 0.8654 0.0355 -7.4128 46 1 2.2966 -0.5677 -8.2835 47 1 2.1805 1.9484 -8.1928 48 1 3.6502 1.2907 -7.4308 49 1 1.2609 5.8099 -7.9985 50 1 2.0511 1.8602 -3.9988 51 1 3.5655 1.2311 -4.6943 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324961181.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:05 Heat of formation + Delta-G solvation = -34.920522 kcal Electronic energy + Delta-G solvation = -31124.807396 eV Core-core repulsion = 27024.446348 eV Total energy + Delta-G solvation = -4100.361047 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.94694 -41.06571 -40.10308 -38.94428 -36.57595 -34.92972 -33.61263 -33.19367 -32.81160 -32.18847 -30.96847 -28.08508 -27.61671 -27.00968 -25.79312 -24.67277 -23.93203 -23.57802 -22.63310 -21.37416 -19.64377 -19.55802 -18.77813 -18.49854 -17.72110 -17.38828 -17.16410 -16.90692 -16.75509 -16.22193 -15.69739 -15.61950 -15.44342 -15.32254 -15.12772 -14.99507 -14.75775 -14.50968 -14.20033 -14.12486 -13.95454 -13.92531 -13.45778 -13.36547 -13.19305 -13.11454 -12.88246 -12.71885 -12.55033 -12.41239 -12.23947 -12.08644 -11.96681 -11.62359 -11.49132 -11.28600 -11.10519 -10.92333 -10.74529 -10.63767 -10.58890 -10.15259 -9.47014 -8.82285 -8.14065 -5.47794 0.14203 0.22352 1.30439 1.41861 1.43549 1.46939 1.49430 2.43241 2.48286 2.79446 3.10413 3.32291 3.42923 3.57416 3.58755 3.75593 3.78557 3.81245 3.87265 3.93501 3.93862 4.15195 4.26903 4.31043 4.37383 4.42482 4.58571 4.60405 4.65324 4.68119 4.75605 4.77337 4.82017 4.91896 5.00490 5.01779 5.06835 5.07762 5.10781 5.12670 5.15730 5.29108 5.32912 5.37726 5.41409 5.45640 5.68640 5.92836 6.11142 6.17485 6.42247 6.95694 6.95952 7.08144 7.65664 8.08736 9.05620 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014486 B = 0.002443 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.471060 B =11459.718510 C =12635.102489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.063 3.937 3 H 0.122 0.878 4 O -0.301 6.301 5 C 0.069 3.931 6 C -0.171 4.171 7 C -0.122 4.122 8 C 0.048 3.952 9 N -0.472 5.472 10 C 0.055 3.945 11 C 0.518 3.482 12 O -0.567 6.567 13 N -0.707 5.707 14 C 0.142 3.858 15 C -0.079 4.079 16 C -0.127 4.127 17 C -0.095 4.095 18 C -0.128 4.128 19 C 0.116 3.884 20 N -0.613 5.613 21 C -0.235 4.235 22 H 0.060 0.940 23 C -0.032 4.032 24 N -0.957 5.957 25 Si 0.940 3.060 26 H -0.277 1.277 27 H -0.317 1.317 28 H -0.266 1.266 29 C 0.157 3.843 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.066 0.934 33 H 0.163 0.837 34 H 0.172 0.828 35 H 0.184 0.816 36 H 0.162 0.838 37 H 0.413 0.587 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.054 0.946 41 H 0.048 0.952 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.082 0.918 45 H 0.063 0.937 46 H 0.076 0.924 47 H 0.045 0.955 48 H 0.025 0.975 49 H 0.259 0.741 50 H 0.062 0.938 51 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.178 -10.104 16.373 19.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.003 3.997 3 H 0.140 0.860 4 O -0.213 6.213 5 C 0.021 3.979 6 C -0.197 4.197 7 C -0.141 4.141 8 C -0.109 4.109 9 N -0.181 5.181 10 C -0.103 4.103 11 C 0.303 3.697 12 O -0.446 6.446 13 N -0.361 5.361 14 C 0.019 3.981 15 C -0.081 4.081 16 C -0.184 4.184 17 C -0.133 4.133 18 C -0.167 4.167 19 C -0.009 4.009 20 N -0.337 5.337 21 C -0.365 4.365 22 H 0.078 0.922 23 C -0.226 4.226 24 N -0.604 5.604 25 Si 0.771 3.229 26 H -0.204 1.204 27 H -0.246 1.246 28 H -0.191 1.191 29 C 0.032 3.968 30 H 0.105 0.895 31 H 0.119 0.881 32 H 0.085 0.915 33 H 0.180 0.820 34 H 0.189 0.811 35 H 0.201 0.799 36 H 0.179 0.821 37 H 0.251 0.749 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.101 0.899 45 H 0.082 0.918 46 H 0.095 0.905 47 H 0.063 0.937 48 H 0.043 0.957 49 H 0.068 0.932 50 H 0.080 0.920 51 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -0.480 -11.344 17.090 20.518 hybrid contribution 0.286 1.416 -1.777 2.290 sum -0.194 -9.928 15.312 18.250 Atomic orbital electron populations 1.22297 0.90343 1.04392 1.05530 1.22408 0.97252 0.97583 0.82437 0.86032 1.86208 1.81056 1.37734 1.16324 1.20342 0.98136 0.91795 0.87608 1.22095 1.03556 0.92443 1.01629 1.22400 0.96975 1.02964 0.91770 1.23242 0.97722 0.89879 1.00073 1.67748 1.12849 1.09494 1.28042 1.22307 1.01068 1.01218 0.85706 1.20401 0.79323 0.85005 0.84950 1.90722 1.41634 1.25153 1.87055 1.45888 1.57250 1.28157 1.04782 1.21333 0.99021 0.95614 0.82183 1.21152 0.97178 0.95672 0.94121 1.21723 0.93379 1.01385 1.01945 1.21404 1.00705 0.98643 0.92593 1.21955 1.01157 0.95057 0.98507 1.21418 0.96630 0.94353 0.88466 1.44370 1.70694 1.17388 1.01250 1.18831 1.17229 0.89898 1.10520 0.92207 1.25894 1.00181 0.95872 1.00700 1.69919 1.38231 1.17423 1.34798 0.86014 0.82636 0.74889 0.79382 1.20416 1.24606 1.19072 1.21105 0.96595 0.91288 0.87828 0.89519 0.88086 0.91508 0.82015 0.81096 0.79917 0.82055 0.74918 0.90708 0.91984 0.92698 0.93307 0.91795 0.91895 0.89918 0.91807 0.90529 0.93652 0.95734 0.93174 0.91988 0.95894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 9.37 71.99 0.67 -1.55 16 2 C 0.06 1.14 2.67 29.85 0.08 1.22 16 3 H 0.12 1.63 5.82 -2.39 -0.01 1.61 16 4 O -0.30 -7.03 9.35 -73.57 -0.69 -7.72 16 5 C 0.07 1.40 6.60 22.60 0.15 1.55 16 6 C -0.17 -2.56 8.72 22.56 0.20 -2.36 16 7 C -0.12 -1.49 10.11 22.34 0.23 -1.27 16 8 C 0.05 0.72 11.18 84.69 0.95 1.66 16 9 N -0.47 -9.86 10.35 -195.44 -2.02 -11.88 16 10 C 0.05 1.17 11.14 84.81 0.94 2.12 16 11 C 0.52 12.44 7.18 87.66 0.63 13.07 16 12 O -0.57 -18.82 16.51 15.96 0.26 -18.56 16 13 N -0.71 -14.63 4.96 -463.06 -2.30 -16.92 16 14 C 0.14 3.23 4.57 86.38 0.39 3.62 16 15 C -0.08 -2.00 0.53 -52.10 -0.03 -2.03 16 16 C -0.13 -3.18 7.81 71.98 0.56 -2.62 16 17 C -0.10 -2.34 4.72 30.64 0.14 -2.20 16 18 C -0.13 -3.78 5.74 30.69 0.18 -3.60 16 19 C 0.12 4.54 4.20 86.36 0.36 4.91 16 20 N -0.61 -25.78 2.16 -699.06 -1.51 -27.30 16 21 C -0.23 -12.17 10.02 84.03 0.84 -11.33 16 22 H 0.06 3.33 8.06 -2.90 -0.02 3.30 16 23 C -0.03 -1.76 5.25 84.86 0.45 -1.31 16 24 N -0.96 -57.70 13.97 21.65 0.30 -57.39 16 25 Si 0.94 45.26 24.34 68.60 1.67 46.93 16 26 H -0.28 -12.70 6.59 99.48 0.66 -12.05 16 27 H -0.32 -15.76 7.11 99.48 0.71 -15.05 16 28 H -0.27 -12.36 6.71 99.48 0.67 -11.69 16 29 C 0.16 5.15 4.94 86.36 0.43 5.58 16 30 H 0.09 0.95 7.74 -2.39 -0.02 0.93 16 31 H 0.10 0.99 7.93 -2.39 -0.02 0.97 16 32 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.16 1.67 5.95 -2.91 -0.02 1.65 16 34 H 0.17 0.96 8.06 -2.91 -0.02 0.94 16 35 H 0.18 1.61 8.06 -2.91 -0.02 1.58 16 36 H 0.16 3.24 8.06 -2.91 -0.02 3.21 16 37 H 0.41 7.21 6.01 -92.71 -0.56 6.66 16 38 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 39 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.05 1.25 6.86 -2.39 -0.02 1.23 16 41 H 0.05 1.55 5.97 -2.38 -0.01 1.54 16 42 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.06 1.97 6.33 -2.39 -0.02 1.96 16 46 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 47 H 0.05 2.01 4.73 -2.38 -0.01 2.00 16 48 H 0.02 0.96 7.03 -2.39 -0.02 0.94 16 49 H 0.26 15.04 8.31 -92.70 -0.77 14.27 16 50 H 0.06 1.96 6.84 -2.39 -0.02 1.94 16 51 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 Total: -1.00 -73.35 393.68 3.18 -70.16 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: 0.29 Total: 17.23 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: 7.17 Total: 5.44 kcal Atomic # 7 Polarization: -107.96 SS G_CDS: -5.53 Total: -113.49 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -0.42 Total: -26.27 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.67 Total: 46.93 kcal Total: -73.35 3.18 -70.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324961181.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.240 kcal (2) G-P(sol) polarization free energy of solvation -73.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds