Wall clock time and date at job start Wed Apr 1 2020 04:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47232 * 2 1 4 4 O 1.42905 * 109.46914 * 119.99337 * 2 1 3 5 5 C 1.35911 * 117.00300 * 276.93702 * 4 2 1 6 6 C 1.39146 * 120.46990 * 356.41789 * 5 4 2 7 7 C 1.38534 * 118.36847 * 180.02562 * 6 5 4 8 8 C 1.38253 * 119.22855 * 359.97438 * 7 6 5 9 9 N 1.31854 * 120.88326 * 0.02562 * 8 7 6 10 10 C 1.31850 * 121.77719 * 359.69787 * 9 8 7 11 11 C 1.50695 * 109.47293 * 239.99551 * 2 1 3 12 12 O 1.21275 * 120.00248 * 245.00081 * 11 2 1 13 13 N 1.34781 * 119.99740 * 64.99825 * 11 2 1 14 14 C 1.46502 * 119.99547 * 179.97438 * 13 11 2 15 15 C 1.53002 * 109.47050 * 180.02562 * 14 13 11 16 16 C 1.53005 * 109.49759 * 60.06237 * 15 14 13 17 17 C 1.53035 * 109.49869 * 180.16503 * 15 14 13 18 18 C 1.53047 * 109.53607 * 181.31455 * 17 15 14 19 19 C 1.53185 * 109.31334 * 298.63576 * 18 17 15 20 20 N 1.46917 * 108.77946 * 54.63406 * 19 18 17 21 21 C 1.36942 * 120.63188 * 126.41483 * 20 19 18 22 22 H 1.07997 * 119.99572 * 328.39662 * 21 20 19 23 23 C 1.38807 * 119.99750 * 148.39871 * 21 20 19 24 24 N 1.31626 * 119.99803 * 164.90377 * 23 21 20 25 25 Si 1.86807 * 120.00587 * 344.90317 * 23 21 20 26 26 H 1.48501 * 109.46774 * 90.77631 * 25 23 21 27 27 H 1.48500 * 109.47063 * 210.78073 * 25 23 21 28 28 H 1.48502 * 109.46542 * 330.78115 * 25 23 21 29 29 C 1.46926 * 118.74073 * 306.39249 * 20 19 18 30 30 H 1.08998 * 109.47401 * 60.00188 * 1 2 3 31 31 H 1.09001 * 109.47184 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47237 * 300.00771 * 1 2 3 33 33 H 1.07994 * 120.81322 * 359.97438 * 6 5 4 34 34 H 1.08006 * 120.38437 * 180.02562 * 7 6 5 35 35 H 1.07996 * 119.56041 * 179.97438 * 8 7 6 36 36 H 1.07995 * 119.65316 * 180.29176 * 10 9 8 37 37 H 0.96998 * 120.00499 * 0.02562 * 13 11 2 38 38 H 1.08997 * 109.47210 * 299.99976 * 14 13 11 39 39 H 1.08998 * 109.47233 * 60.00625 * 14 13 11 40 40 H 1.08997 * 109.46743 * 60.00607 * 16 15 14 41 41 H 1.08997 * 109.47137 * 180.02562 * 16 15 14 42 42 H 1.08995 * 109.47171 * 300.00416 * 16 15 14 43 43 H 1.09001 * 109.45994 * 301.33201 * 17 15 14 44 44 H 1.08999 * 109.46444 * 61.29510 * 17 15 14 45 45 H 1.08998 * 109.49488 * 178.68003 * 18 17 15 46 46 H 1.09005 * 109.49350 * 58.58679 * 18 17 15 47 47 H 1.09010 * 109.58292 * 294.84590 * 19 18 17 48 48 H 1.09000 * 109.58875 * 174.42441 * 19 18 17 49 49 H 0.97001 * 120.00121 * 179.97438 * 24 23 21 50 50 H 1.09006 * 109.59000 * 293.82187 * 29 20 19 51 51 H 1.08998 * 109.59140 * 173.39195 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 2.0741 0.0524 2.3139 6 6 1.7621 1.4084 2.3103 7 6 1.8463 2.1064 3.5039 8 6 2.2340 1.4385 4.6506 9 7 2.5229 0.1524 4.6198 10 6 2.4501 -0.5491 3.5058 11 6 2.0324 -0.7105 -1.2304 12 8 2.6530 -1.7467 -1.1213 13 7 1.7919 -0.1943 -2.4520 14 6 2.2808 -0.8847 -3.6480 15 6 1.8764 -0.0944 -4.8942 16 6 2.4874 1.3069 -4.8307 17 6 2.3833 -0.8173 -6.1442 18 6 2.0077 -0.0106 -7.3895 19 6 0.4826 0.1005 -7.4802 20 7 -0.0264 0.6619 -6.2215 21 6 -0.8364 1.7661 -6.2271 22 1 -0.7196 2.5175 -6.9940 23 6 -1.8073 1.9195 -5.2471 24 7 -2.3796 3.0908 -5.0653 25 14 -2.3020 0.4636 -4.1862 26 1 -1.4546 0.4288 -2.9673 27 1 -3.7280 0.5987 -3.7942 28 1 -2.1167 -0.7939 -4.9541 29 6 0.3497 0.0158 -4.9567 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.4624 1.9046 1.3991 34 1 1.6111 3.1600 3.5384 35 1 2.3019 1.9775 5.5840 36 1 2.6900 -1.6020 3.5207 37 1 1.2958 0.6347 -2.5392 38 1 3.3671 -0.9625 -3.6042 39 1 1.8465 -1.8834 -3.6941 40 1 3.5736 1.2280 -4.7874 41 1 2.1987 1.8697 -5.7184 42 1 2.1247 1.8214 -3.9409 43 1 3.4672 -0.9188 -6.0906 44 1 1.9285 -1.8062 -6.2014 45 1 2.3894 -0.5141 -8.2777 46 1 2.4419 0.9869 -7.3213 47 1 0.0530 -0.8886 -7.6393 48 1 0.2126 0.7560 -8.3082 49 1 -3.0584 3.1979 -4.3807 50 1 -0.0908 -0.9802 -4.9099 51 1 -0.0079 0.6154 -4.1196 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324961182.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:10 Heat of formation + Delta-G solvation = -14.625904 kcal Electronic energy + Delta-G solvation = -31733.884596 eV Core-core repulsion = 27634.403589 eV Total energy + Delta-G solvation = -4099.481007 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.11996 -40.04194 -38.95506 -37.97193 -35.08550 -33.49727 -32.63319 -32.42988 -31.39474 -30.70775 -30.20633 -26.90156 -26.22601 -25.43841 -24.92855 -23.91617 -23.10098 -22.41821 -20.66207 -20.36228 -18.75853 -18.56453 -17.75091 -17.00660 -16.84053 -16.41366 -15.99092 -15.86149 -15.49029 -14.92074 -14.66429 -14.47332 -14.23685 -14.14469 -13.93434 -13.68701 -13.63222 -13.57738 -13.22829 -13.10081 -12.64413 -12.52496 -12.42612 -12.25719 -12.13414 -11.88413 -11.75517 -11.42984 -11.29495 -11.14894 -10.86388 -10.63894 -10.47329 -10.11951 -10.10444 -9.99726 -9.88479 -9.78078 -9.70857 -9.57280 -9.06025 -8.74175 -8.70078 -7.00582 -6.05947 -3.47487 0.84276 0.94227 2.34255 2.47539 3.09547 3.36009 3.38578 3.41248 3.52046 4.19179 4.27877 4.37913 4.42799 4.45612 4.56966 4.63118 4.72742 4.80524 4.94144 5.00544 5.11276 5.13468 5.29652 5.31689 5.33016 5.45215 5.51832 5.65271 5.70377 5.72784 5.75933 5.83956 5.85239 5.88011 5.94984 6.09430 6.15268 6.17986 6.25053 6.28957 6.36813 6.49030 6.51511 6.54167 6.64531 6.73087 6.88607 6.93375 7.41674 7.67201 7.88959 8.09967 8.23562 8.83304 9.59595 9.99928 11.10000 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013685 B = 0.003010 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.507914 B = 9299.984951 C =10474.056278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.064 3.936 3 H 0.099 0.901 4 O -0.277 6.277 5 C 0.085 3.915 6 C -0.171 4.171 7 C -0.128 4.128 8 C 0.053 3.947 9 N -0.447 5.447 10 C 0.075 3.925 11 C 0.519 3.481 12 O -0.522 6.522 13 N -0.717 5.717 14 C 0.133 3.867 15 C -0.093 4.093 16 C -0.129 4.129 17 C -0.096 4.096 18 C -0.137 4.137 19 C 0.146 3.854 20 N -0.603 5.603 21 C -0.256 4.256 22 H 0.085 0.915 23 C 0.024 3.976 24 N -0.911 5.911 25 Si 0.886 3.114 26 H -0.290 1.290 27 H -0.304 1.304 28 H -0.271 1.271 29 C 0.138 3.862 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.143 0.857 34 H 0.139 0.861 35 H 0.158 0.842 36 H 0.165 0.835 37 H 0.405 0.595 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.042 0.958 41 H 0.077 0.923 42 H 0.046 0.954 43 H 0.054 0.946 44 H 0.058 0.942 45 H 0.055 0.945 46 H 0.066 0.934 47 H 0.022 0.978 48 H 0.063 0.937 49 H 0.263 0.737 50 H 0.027 0.973 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.392 -2.909 10.614 14.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.004 3.996 3 H 0.117 0.883 4 O -0.188 6.188 5 C 0.037 3.963 6 C -0.197 4.197 7 C -0.148 4.148 8 C -0.104 4.104 9 N -0.156 5.156 10 C -0.084 4.084 11 C 0.303 3.697 12 O -0.397 6.397 13 N -0.371 5.371 14 C 0.009 3.991 15 C -0.096 4.096 16 C -0.186 4.186 17 C -0.134 4.134 18 C -0.176 4.176 19 C 0.020 3.980 20 N -0.326 5.326 21 C -0.384 4.384 22 H 0.103 0.897 23 C -0.175 4.175 24 N -0.554 5.554 25 Si 0.717 3.283 26 H -0.218 1.218 27 H -0.232 1.232 28 H -0.196 1.196 29 C 0.012 3.988 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.160 0.840 34 H 0.157 0.843 35 H 0.175 0.825 36 H 0.182 0.818 37 H 0.242 0.758 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.061 0.939 41 H 0.096 0.904 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.085 0.915 47 H 0.040 0.960 48 H 0.081 0.919 49 H 0.072 0.928 50 H 0.044 0.956 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.994 -4.174 11.461 15.769 hybrid contribution -1.057 0.385 -0.217 1.146 sum 8.937 -3.789 11.244 14.854 Atomic orbital electron populations 1.22391 0.92107 1.04840 1.04476 1.22281 0.96082 0.97146 0.84082 0.88301 1.86243 1.80195 1.37518 1.14803 1.20271 0.96916 0.91069 0.88024 1.21823 1.04055 0.93522 1.00307 1.22024 0.98666 1.01426 0.92659 1.22682 0.98523 0.90611 0.98563 1.67751 1.12245 1.08312 1.27312 1.22239 1.00106 1.00894 0.85166 1.19869 0.80227 0.85573 0.84038 1.90726 1.39647 1.22890 1.86438 1.46004 1.57607 1.28242 1.05283 1.21505 0.99034 0.95796 0.82751 1.21373 0.99164 0.95951 0.93079 1.21752 0.98354 0.95478 1.03038 1.21359 0.99516 0.98465 0.94069 1.22049 0.98999 1.00227 0.96300 1.20973 0.91047 0.96682 0.89264 1.44277 1.56364 1.32679 0.99327 1.18923 1.09245 0.96187 1.14084 0.89724 1.25383 0.96748 0.96415 0.98943 1.69784 1.29133 1.21923 1.34537 0.86962 0.76702 0.84661 0.79932 1.21770 1.23224 1.19583 1.21425 0.90603 0.96438 0.90382 0.89463 0.90397 0.90633 0.83971 0.84315 0.82478 0.81813 0.75829 0.91342 0.91451 0.93887 0.90376 0.93535 0.92680 0.92338 0.92644 0.91503 0.96021 0.91878 0.92752 0.95561 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.09 9.23 37.16 0.34 -1.75 16 2 C 0.06 0.79 2.66 -27.89 -0.07 0.71 16 3 H 0.10 0.97 6.03 -51.93 -0.31 0.66 16 4 O -0.28 -3.73 9.36 -39.32 -0.37 -4.10 16 5 C 0.09 1.00 6.56 -39.07 -0.26 0.75 16 6 C -0.17 -1.67 8.45 -39.14 -0.33 -2.00 16 7 C -0.13 -1.08 10.11 -39.47 -0.40 -1.48 16 8 C 0.05 0.49 11.18 -17.54 -0.20 0.29 16 9 N -0.45 -5.13 10.36 -13.13 -0.14 -5.26 16 10 C 0.07 0.86 11.14 -17.37 -0.19 0.67 16 11 C 0.52 7.75 7.18 -10.99 -0.08 7.67 16 12 O -0.52 -9.58 16.51 -14.30 -0.24 -9.81 16 13 N -0.72 -10.19 4.96 -60.29 -0.30 -10.49 16 14 C 0.13 1.91 4.57 -4.04 -0.02 1.89 16 15 C -0.09 -1.43 0.53 -154.38 -0.08 -1.51 16 16 C -0.13 -1.94 7.81 37.16 0.29 -1.65 16 17 C -0.10 -1.34 4.71 -26.69 -0.13 -1.46 16 18 C -0.14 -2.00 5.74 -26.61 -0.15 -2.15 16 19 C 0.15 2.64 6.51 -3.72 -0.02 2.62 16 20 N -0.60 -12.95 2.17 -172.32 -0.37 -13.33 16 21 C -0.26 -6.58 10.04 -15.06 -0.15 -6.73 16 22 H 0.09 2.36 8.06 -52.49 -0.42 1.94 16 23 C 0.02 0.64 5.30 -17.43 -0.09 0.55 16 24 N -0.91 -26.13 13.97 55.49 0.78 -25.35 16 25 Si 0.89 20.85 24.30 -169.99 -4.13 16.72 16 26 H -0.29 -6.12 6.42 56.52 0.36 -5.76 16 27 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 28 H -0.27 -6.45 6.47 56.52 0.37 -6.09 16 29 C 0.14 2.65 2.58 -3.71 -0.01 2.64 16 30 H 0.09 1.06 7.73 -51.93 -0.40 0.66 16 31 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 0.75 7.36 -51.93 -0.38 0.37 16 33 H 0.14 1.17 5.86 -52.49 -0.31 0.86 16 34 H 0.14 0.79 8.06 -52.48 -0.42 0.36 16 35 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16 37 H 0.41 5.57 6.00 -40.82 -0.25 5.32 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.08 1.34 5.97 -51.93 -0.31 1.03 16 42 H 0.05 0.69 6.87 -51.93 -0.36 0.34 16 43 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.07 1.01 6.34 -51.93 -0.33 0.68 16 47 H 0.02 0.39 8.14 -51.92 -0.42 -0.03 16 48 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 49 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 50 H 0.03 0.54 6.88 -51.93 -0.36 0.18 16 51 H 0.07 1.40 3.54 -51.93 -0.18 1.22 16 LS Contribution 392.10 15.07 5.91 5.91 Total: -1.00 -31.59 392.10 -8.29 -39.88 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -7.88 Total: 6.78 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -1.55 Total: -0.94 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: -0.03 Total: -54.43 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -0.60 Total: -13.91 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.13 Total: 16.72 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.59 -8.29 -39.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324961182.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.253 kcal (2) G-P(sol) polarization free energy of solvation -31.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds