Wall clock time and date at job start Wed Apr 1 2020 04:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47232 * 2 1 4 4 O 1.42905 * 109.46914 * 119.99337 * 2 1 3 5 5 C 1.35911 * 117.00300 * 276.93702 * 4 2 1 6 6 C 1.39146 * 120.46990 * 356.41789 * 5 4 2 7 7 C 1.38534 * 118.36847 * 180.02562 * 6 5 4 8 8 C 1.38253 * 119.22855 * 359.97438 * 7 6 5 9 9 N 1.31854 * 120.88326 * 0.02562 * 8 7 6 10 10 C 1.31850 * 121.77719 * 359.69787 * 9 8 7 11 11 C 1.50695 * 109.47293 * 239.99551 * 2 1 3 12 12 O 1.21275 * 120.00248 * 245.00081 * 11 2 1 13 13 N 1.34781 * 119.99740 * 64.99825 * 11 2 1 14 14 C 1.46502 * 119.99547 * 179.97438 * 13 11 2 15 15 C 1.53002 * 109.47050 * 180.02562 * 14 13 11 16 16 C 1.53005 * 109.49759 * 60.06237 * 15 14 13 17 17 C 1.53035 * 109.49869 * 180.16503 * 15 14 13 18 18 C 1.53047 * 109.53607 * 181.31455 * 17 15 14 19 19 C 1.53185 * 109.31334 * 298.63576 * 18 17 15 20 20 N 1.46917 * 108.77946 * 54.63406 * 19 18 17 21 21 C 1.36942 * 120.63188 * 126.41483 * 20 19 18 22 22 H 1.07997 * 119.99572 * 328.39662 * 21 20 19 23 23 C 1.38807 * 119.99750 * 148.39871 * 21 20 19 24 24 N 1.31626 * 119.99803 * 164.90377 * 23 21 20 25 25 Si 1.86807 * 120.00587 * 344.90317 * 23 21 20 26 26 H 1.48501 * 109.46774 * 90.77631 * 25 23 21 27 27 H 1.48500 * 109.47063 * 210.78073 * 25 23 21 28 28 H 1.48502 * 109.46542 * 330.78115 * 25 23 21 29 29 C 1.46926 * 118.74073 * 306.39249 * 20 19 18 30 30 H 1.08998 * 109.47401 * 60.00188 * 1 2 3 31 31 H 1.09001 * 109.47184 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47237 * 300.00771 * 1 2 3 33 33 H 1.07994 * 120.81322 * 359.97438 * 6 5 4 34 34 H 1.08006 * 120.38437 * 180.02562 * 7 6 5 35 35 H 1.07996 * 119.56041 * 179.97438 * 8 7 6 36 36 H 1.07995 * 119.65316 * 180.29176 * 10 9 8 37 37 H 0.96998 * 120.00499 * 0.02562 * 13 11 2 38 38 H 1.08997 * 109.47210 * 299.99976 * 14 13 11 39 39 H 1.08998 * 109.47233 * 60.00625 * 14 13 11 40 40 H 1.08997 * 109.46743 * 60.00607 * 16 15 14 41 41 H 1.08997 * 109.47137 * 180.02562 * 16 15 14 42 42 H 1.08995 * 109.47171 * 300.00416 * 16 15 14 43 43 H 1.09001 * 109.45994 * 301.33201 * 17 15 14 44 44 H 1.08999 * 109.46444 * 61.29510 * 17 15 14 45 45 H 1.08998 * 109.49488 * 178.68003 * 18 17 15 46 46 H 1.09005 * 109.49350 * 58.58679 * 18 17 15 47 47 H 1.09010 * 109.58292 * 294.84590 * 19 18 17 48 48 H 1.09000 * 109.58875 * 174.42441 * 19 18 17 49 49 H 0.97001 * 120.00121 * 179.97438 * 24 23 21 50 50 H 1.09006 * 109.59000 * 293.82187 * 29 20 19 51 51 H 1.08998 * 109.59140 * 173.39195 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 2.0741 0.0524 2.3139 6 6 1.7621 1.4084 2.3103 7 6 1.8463 2.1064 3.5039 8 6 2.2340 1.4385 4.6506 9 7 2.5229 0.1524 4.6198 10 6 2.4501 -0.5491 3.5058 11 6 2.0324 -0.7105 -1.2304 12 8 2.6530 -1.7467 -1.1213 13 7 1.7919 -0.1943 -2.4520 14 6 2.2808 -0.8847 -3.6480 15 6 1.8764 -0.0944 -4.8942 16 6 2.4874 1.3069 -4.8307 17 6 2.3833 -0.8173 -6.1442 18 6 2.0077 -0.0106 -7.3895 19 6 0.4826 0.1005 -7.4802 20 7 -0.0264 0.6619 -6.2215 21 6 -0.8364 1.7661 -6.2271 22 1 -0.7196 2.5175 -6.9940 23 6 -1.8073 1.9195 -5.2471 24 7 -2.3796 3.0908 -5.0653 25 14 -2.3020 0.4636 -4.1862 26 1 -1.4546 0.4288 -2.9673 27 1 -3.7280 0.5987 -3.7942 28 1 -2.1167 -0.7939 -4.9541 29 6 0.3497 0.0158 -4.9567 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.4624 1.9046 1.3991 34 1 1.6111 3.1600 3.5384 35 1 2.3019 1.9775 5.5840 36 1 2.6900 -1.6020 3.5207 37 1 1.2958 0.6347 -2.5392 38 1 3.3671 -0.9625 -3.6042 39 1 1.8465 -1.8834 -3.6941 40 1 3.5736 1.2280 -4.7874 41 1 2.1987 1.8697 -5.7184 42 1 2.1247 1.8214 -3.9409 43 1 3.4672 -0.9188 -6.0906 44 1 1.9285 -1.8062 -6.2014 45 1 2.3894 -0.5141 -8.2777 46 1 2.4419 0.9869 -7.3213 47 1 0.0530 -0.8886 -7.6393 48 1 0.2126 0.7560 -8.3082 49 1 -3.0584 3.1979 -4.3807 50 1 -0.0908 -0.9802 -4.9099 51 1 -0.0079 0.6154 -4.1196 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324961182.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:09 Heat of formation + Delta-G solvation = -34.391857 kcal Electronic energy + Delta-G solvation = -31734.741712 eV Core-core repulsion = 27634.403589 eV Total energy + Delta-G solvation = -4100.338123 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.01059 -41.13290 -40.15098 -38.99536 -36.48266 -35.01943 -33.77701 -33.22687 -32.83127 -32.15663 -31.02765 -28.13371 -27.51640 -27.11488 -25.87199 -24.74081 -24.23791 -23.64558 -22.06491 -21.47729 -19.97498 -19.59342 -18.82623 -18.56835 -17.76619 -17.44216 -17.17639 -16.96704 -16.71932 -16.27814 -15.87035 -15.45055 -15.37152 -15.32814 -15.22712 -15.02055 -14.83870 -14.66923 -14.46262 -14.04276 -13.95397 -13.79132 -13.54601 -13.49292 -13.23204 -13.21892 -12.87135 -12.76864 -12.57464 -12.34098 -12.32109 -12.09442 -11.96745 -11.58638 -11.52397 -11.35632 -11.08211 -11.00076 -10.78376 -10.62320 -10.61853 -10.23859 -9.51041 -8.80504 -8.12822 -5.49798 0.11219 0.19028 1.22209 1.33614 1.38956 1.43109 1.49016 2.39280 2.42594 2.76542 3.10651 3.30225 3.35170 3.51662 3.53999 3.66349 3.71525 3.76659 3.86648 3.87362 3.88466 4.10709 4.24750 4.31125 4.37122 4.43806 4.45869 4.47354 4.57311 4.69045 4.71309 4.73751 4.78580 4.90300 4.92570 4.98440 5.00590 5.06055 5.07117 5.13301 5.16248 5.22763 5.31209 5.36268 5.41714 5.44843 5.68173 5.93580 6.05421 6.18136 6.30278 6.92585 6.96282 6.96639 7.64889 8.08007 9.07145 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013685 B = 0.003010 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.507914 B = 9299.984951 C =10474.056278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.067 3.933 3 H 0.126 0.874 4 O -0.299 6.299 5 C 0.066 3.934 6 C -0.172 4.172 7 C -0.121 4.121 8 C 0.050 3.950 9 N -0.470 5.470 10 C 0.057 3.943 11 C 0.519 3.481 12 O -0.560 6.560 13 N -0.714 5.714 14 C 0.137 3.863 15 C -0.082 4.082 16 C -0.125 4.125 17 C -0.095 4.095 18 C -0.126 4.126 19 C 0.138 3.862 20 N -0.615 5.615 21 C -0.240 4.240 22 H 0.050 0.950 23 C -0.027 4.027 24 N -0.957 5.957 25 Si 0.939 3.061 26 H -0.254 1.254 27 H -0.319 1.319 28 H -0.275 1.275 29 C 0.135 3.865 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.093 0.907 33 H 0.159 0.841 34 H 0.173 0.827 35 H 0.186 0.814 36 H 0.163 0.837 37 H 0.408 0.592 38 H 0.082 0.918 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.054 0.946 42 H 0.043 0.957 43 H 0.083 0.917 44 H 0.062 0.938 45 H 0.084 0.916 46 H 0.061 0.939 47 H 0.027 0.973 48 H 0.052 0.948 49 H 0.261 0.739 50 H 0.020 0.980 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.952 -3.061 11.649 16.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.008 3.992 3 H 0.143 0.857 4 O -0.210 6.210 5 C 0.019 3.981 6 C -0.198 4.198 7 C -0.140 4.140 8 C -0.107 4.107 9 N -0.180 5.180 10 C -0.101 4.101 11 C 0.304 3.696 12 O -0.438 6.438 13 N -0.367 5.367 14 C 0.013 3.987 15 C -0.084 4.084 16 C -0.182 4.182 17 C -0.133 4.133 18 C -0.165 4.165 19 C 0.013 3.987 20 N -0.339 5.339 21 C -0.370 4.370 22 H 0.068 0.932 23 C -0.222 4.222 24 N -0.603 5.603 25 Si 0.769 3.231 26 H -0.180 1.180 27 H -0.248 1.248 28 H -0.201 1.201 29 C 0.010 3.990 30 H 0.102 0.898 31 H 0.084 0.916 32 H 0.112 0.888 33 H 0.177 0.823 34 H 0.190 0.810 35 H 0.203 0.797 36 H 0.180 0.820 37 H 0.245 0.755 38 H 0.100 0.900 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.062 0.938 43 H 0.102 0.898 44 H 0.081 0.919 45 H 0.103 0.897 46 H 0.080 0.920 47 H 0.045 0.955 48 H 0.070 0.930 49 H 0.070 0.930 50 H 0.038 0.962 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.593 -4.351 12.486 17.585 hybrid contribution -1.516 0.502 -0.600 1.706 sum 10.077 -3.849 11.887 16.052 Atomic orbital electron populations 1.22365 0.91613 1.04314 1.05131 1.22293 0.96296 0.97854 0.82796 0.85656 1.86206 1.80777 1.38577 1.15483 1.20374 0.98314 0.92009 0.87412 1.22096 1.03383 0.92738 1.01618 1.22403 0.97107 1.02873 0.91650 1.23266 0.97242 0.90016 1.00182 1.67769 1.13216 1.09624 1.27345 1.22302 1.00966 1.01239 0.85584 1.20321 0.79393 0.85071 0.84808 1.90706 1.41508 1.24624 1.86998 1.46015 1.57268 1.28182 1.05250 1.21461 0.99784 0.95257 0.82200 1.21223 0.95967 0.96669 0.94569 1.21696 0.99938 0.94790 1.01754 1.21400 1.01309 0.98098 0.92524 1.21937 0.95785 1.00635 0.98149 1.21160 0.93747 0.96267 0.87500 1.44370 1.56162 1.31912 1.01450 1.18803 1.09313 0.96473 1.12413 0.93231 1.25899 0.97147 0.98313 1.00817 1.69914 1.30451 1.23887 1.36085 0.86087 0.75859 0.81221 0.79957 1.17986 1.24842 1.20055 1.21422 0.93567 0.95232 0.88771 0.89805 0.91559 0.88850 0.82337 0.81004 0.79695 0.81976 0.75452 0.89974 0.91937 0.91333 0.92739 0.93804 0.89802 0.91900 0.89747 0.91997 0.95502 0.92962 0.93002 0.96218 0.92711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.77 9.23 71.98 0.66 -3.10 16 2 C 0.07 1.53 2.66 29.85 0.08 1.61 16 3 H 0.13 2.13 6.03 -2.39 -0.01 2.12 16 4 O -0.30 -7.83 9.36 -73.55 -0.69 -8.52 16 5 C 0.07 1.49 6.56 22.60 0.15 1.64 16 6 C -0.17 -2.93 8.45 22.56 0.19 -2.74 16 7 C -0.12 -1.64 10.11 22.34 0.23 -1.42 16 8 C 0.05 0.79 11.18 84.69 0.95 1.74 16 9 N -0.47 -10.29 10.36 -195.44 -2.02 -12.31 16 10 C 0.06 1.30 11.14 84.80 0.94 2.24 16 11 C 0.52 14.74 7.18 87.65 0.63 15.37 16 12 O -0.56 -20.12 16.51 15.97 0.26 -19.86 16 13 N -0.71 -18.83 4.96 -463.06 -2.30 -21.12 16 14 C 0.14 3.59 4.57 86.38 0.39 3.98 16 15 C -0.08 -2.32 0.53 -52.10 -0.03 -2.34 16 16 C -0.12 -3.47 7.81 71.98 0.56 -2.91 16 17 C -0.10 -2.33 4.71 30.62 0.14 -2.19 16 18 C -0.13 -3.37 5.74 30.67 0.18 -3.19 16 19 C 0.14 4.86 6.51 86.36 0.56 5.43 16 20 N -0.61 -26.18 2.17 -699.10 -1.52 -27.70 16 21 C -0.24 -12.61 10.04 84.03 0.84 -11.77 16 22 H 0.05 2.90 8.06 -2.91 -0.02 2.88 16 23 C -0.03 -1.46 5.30 84.86 0.45 -1.01 16 24 N -0.96 -56.38 13.97 21.65 0.30 -56.08 16 25 Si 0.94 43.17 24.30 68.60 1.67 44.83 16 26 H -0.25 -10.05 6.42 99.48 0.64 -9.41 16 27 H -0.32 -15.40 7.11 99.48 0.71 -14.69 16 28 H -0.28 -12.72 6.47 99.48 0.64 -12.08 16 29 C 0.14 5.02 2.58 86.37 0.22 5.25 16 30 H 0.08 1.84 7.73 -2.39 -0.02 1.82 16 31 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.09 1.64 7.36 -2.39 -0.02 1.62 16 33 H 0.16 2.07 5.86 -2.91 -0.02 2.05 16 34 H 0.17 1.16 8.06 -2.91 -0.02 1.13 16 35 H 0.19 1.73 8.06 -2.91 -0.02 1.71 16 36 H 0.16 3.48 8.06 -2.91 -0.02 3.45 16 37 H 0.41 10.36 6.00 -92.71 -0.56 9.80 16 38 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.05 1.79 5.97 -2.39 -0.01 1.78 16 42 H 0.04 1.22 6.87 -2.39 -0.02 1.21 16 43 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.06 1.74 6.34 -2.38 -0.02 1.72 16 47 H 0.03 0.93 8.14 -2.38 -0.02 0.91 16 48 H 0.05 1.91 7.93 -2.39 -0.02 1.89 16 49 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 50 H 0.02 0.77 6.88 -2.38 -0.02 0.76 16 51 H 0.05 2.17 3.54 -2.39 -0.01 2.16 16 Total: -1.00 -70.88 392.10 3.12 -67.76 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: 0.26 Total: 26.41 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: 7.16 Total: 6.59 kcal Atomic # 7 Polarization: -111.68 SS G_CDS: -5.53 Total: -117.21 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: -0.42 Total: -28.38 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 1.67 Total: 44.83 kcal Total: -70.88 3.12 -67.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324961182.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.369 kcal (2) G-P(sol) polarization free energy of solvation -70.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds