Wall clock time and date at job start Wed Apr 1 2020 04:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.46723 * 2 1 4 4 O 1.42899 * 109.46824 * 239.99974 * 2 1 3 5 5 C 1.35919 * 116.99927 * 86.12728 * 4 2 1 6 6 C 1.39145 * 120.47085 * 354.76422 * 5 4 2 7 7 C 1.38531 * 118.37037 * 179.97438 * 6 5 4 8 8 C 1.38257 * 119.22491 * 0.02562 * 7 6 5 9 9 N 1.31845 * 120.88353 * 359.97438 * 8 7 6 10 10 C 1.31841 * 121.78507 * 0.02562 * 9 8 7 11 11 C 1.50699 * 109.47177 * 119.99927 * 2 1 3 12 12 O 1.21284 * 119.99708 * 119.99831 * 11 2 1 13 13 N 1.34776 * 120.00079 * 299.99967 * 11 2 1 14 14 C 1.46495 * 119.99925 * 180.02562 * 13 11 2 15 15 C 1.53000 * 109.47317 * 180.02562 * 14 13 11 16 16 C 1.53003 * 109.49643 * 60.00003 * 15 14 13 17 17 C 1.53036 * 109.49959 * 180.02562 * 15 14 13 18 18 C 1.53045 * 109.53870 * 181.28105 * 17 15 14 19 19 C 1.53190 * 109.34316 * 298.68985 * 18 17 15 20 20 N 1.46923 * 108.77599 * 54.61467 * 19 18 17 21 21 C 1.36935 * 120.62999 * 126.41313 * 20 19 18 22 22 H 1.07999 * 120.00266 * 333.02046 * 21 20 19 23 23 C 1.38817 * 119.99954 * 153.01598 * 21 20 19 24 24 N 1.31612 * 120.00055 * 343.90703 * 23 21 20 25 25 Si 1.86804 * 119.99762 * 163.90069 * 23 21 20 26 26 H 1.48499 * 109.47027 * 90.00641 * 25 23 21 27 27 H 1.48501 * 109.47054 * 210.00347 * 25 23 21 28 28 H 1.48497 * 109.47111 * 330.00241 * 25 23 21 29 29 C 1.46925 * 118.74053 * 306.39390 * 20 19 18 30 30 H 1.09004 * 109.47082 * 299.99770 * 1 2 3 31 31 H 1.09000 * 109.47820 * 60.00077 * 1 2 3 32 32 H 1.09001 * 109.47417 * 180.02562 * 1 2 3 33 33 H 1.08000 * 120.81453 * 359.71054 * 6 5 4 34 34 H 1.07998 * 120.39187 * 179.97438 * 7 6 5 35 35 H 1.08001 * 119.56175 * 180.02562 * 8 7 6 36 36 H 1.07999 * 119.66132 * 180.02562 * 10 9 8 37 37 H 0.97001 * 120.00358 * 0.02562 * 13 11 2 38 38 H 1.09001 * 109.47044 * 299.99643 * 14 13 11 39 39 H 1.09000 * 109.47475 * 60.00109 * 14 13 11 40 40 H 1.08997 * 109.47476 * 59.99792 * 16 15 14 41 41 H 1.08996 * 109.47459 * 180.02562 * 16 15 14 42 42 H 1.09003 * 109.46935 * 300.00041 * 16 15 14 43 43 H 1.08999 * 109.46265 * 301.33909 * 17 15 14 44 44 H 1.09002 * 109.45803 * 61.30324 * 17 15 14 45 45 H 1.08996 * 109.49553 * 178.72035 * 18 17 15 46 46 H 1.09001 * 109.46562 * 58.63975 * 18 17 15 47 47 H 1.09001 * 109.58136 * 294.83145 * 19 18 17 48 48 H 1.08994 * 109.58869 * 174.40689 * 19 18 17 49 49 H 0.97006 * 120.00206 * 180.02562 * 24 23 21 50 50 H 1.09002 * 109.58893 * 293.81885 * 29 20 19 51 51 H 1.09005 * 109.58642 * 173.39449 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.1348 0.0682 -2.2984 6 6 1.7094 1.3928 -2.3258 7 6 1.8616 2.1088 -3.5019 8 6 2.4262 1.4890 -4.6013 9 7 2.8190 0.2318 -4.5419 10 6 2.6919 -0.4842 -3.4422 11 6 2.0323 -0.7104 1.2305 12 8 2.7296 -1.6965 1.1191 13 7 1.7068 -0.2499 2.4546 14 6 2.1956 -0.9402 3.6507 15 6 1.6850 -0.2194 4.9000 16 6 0.1550 -0.2203 4.9005 17 6 2.1959 -0.9397 6.1499 18 6 1.6595 -0.2383 7.3999 19 6 2.1704 1.2056 7.4302 20 7 1.8072 1.8623 6.1671 21 6 1.1195 3.0465 6.1691 22 1 0.4730 3.2942 6.9980 23 6 1.2534 3.9286 5.1056 24 7 2.2549 3.7954 4.2622 25 14 0.0119 5.3047 4.8716 26 1 0.4667 6.5119 5.6070 27 1 -0.1087 5.6220 3.4259 28 1 -1.3090 4.8740 5.3957 29 6 2.1962 1.2247 4.9019 30 1 -0.3633 0.5138 0.8900 31 1 -0.3635 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.2674 1.8501 -1.4529 34 1 1.5423 3.1389 -3.5597 35 1 2.5478 2.0422 -5.5208 36 1 3.0257 -1.5113 -3.4316 37 1 1.1488 0.5385 2.5436 38 1 1.8326 -1.9680 3.6509 39 1 3.2856 -0.9398 3.6505 40 1 -0.2078 -1.2481 4.9005 41 1 -0.2083 0.2937 5.7904 42 1 -0.2089 0.2934 4.0107 43 1 1.8534 -1.9744 6.1383 44 1 3.2856 -0.9181 6.1615 45 1 2.0051 -0.7652 8.2893 46 1 0.5697 -0.2382 7.3770 47 1 3.2544 1.2072 7.5444 48 1 1.7123 1.7379 8.2638 49 1 2.3487 4.4120 3.5192 50 1 3.2824 1.2279 4.8099 51 1 1.7551 1.7696 4.0673 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324961183.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:14 Heat of formation + Delta-G solvation = -19.653466 kcal Electronic energy + Delta-G solvation = -31604.180928 eV Core-core repulsion = 27504.481910 eV Total energy + Delta-G solvation = -4099.699018 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.01123 -39.85019 -38.70183 -37.79945 -34.87487 -33.43011 -32.57967 -32.34475 -31.20461 -30.17188 -29.89599 -26.67947 -25.97069 -25.40233 -24.74052 -23.81350 -22.92354 -22.19419 -20.66954 -20.15807 -18.64145 -18.23727 -17.46631 -16.92728 -16.77085 -16.24838 -15.93787 -15.61221 -15.08115 -14.81752 -14.57990 -14.24907 -14.04204 -13.96645 -13.82437 -13.72033 -13.38670 -13.24204 -13.15003 -12.81668 -12.54373 -12.39693 -12.33103 -12.27117 -11.81782 -11.67115 -11.39527 -11.36657 -11.04397 -10.93807 -10.72650 -10.48702 -10.26554 -10.18158 -10.03709 -9.90488 -9.80421 -9.77254 -9.55966 -9.46467 -8.84308 -8.61748 -8.58459 -6.76621 -5.89798 -3.31491 0.92556 1.02676 2.48396 2.65855 3.25903 3.34379 3.36281 3.55641 3.59575 4.28446 4.38181 4.39486 4.56479 4.57084 4.63870 4.76971 4.88721 5.00708 5.06328 5.20817 5.30004 5.35017 5.37384 5.43630 5.51145 5.52489 5.70969 5.77199 5.84378 5.85414 5.89232 5.96830 6.01759 6.09541 6.18110 6.18214 6.34413 6.36668 6.47218 6.52675 6.64636 6.75990 6.80414 6.89339 6.96904 6.99109 7.21257 7.49640 7.63944 7.67738 7.75199 8.29145 8.32719 9.10268 9.73638 10.30508 11.17822 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011242 B = 0.003098 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.114597 B = 9035.497595 C =10884.031070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.063 3.937 3 H 0.102 0.898 4 O -0.277 6.277 5 C 0.086 3.914 6 C -0.169 4.169 7 C -0.129 4.129 8 C 0.052 3.948 9 N -0.448 5.448 10 C 0.075 3.925 11 C 0.518 3.482 12 O -0.527 6.527 13 N -0.710 5.710 14 C 0.138 3.862 15 C -0.103 4.103 16 C -0.126 4.126 17 C -0.096 4.096 18 C -0.135 4.135 19 C 0.143 3.857 20 N -0.589 5.589 21 C -0.245 4.245 22 H 0.065 0.935 23 C 0.001 3.999 24 N -0.905 5.905 25 Si 0.898 3.102 26 H -0.287 1.287 27 H -0.290 1.290 28 H -0.280 1.280 29 C 0.184 3.816 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.143 0.857 34 H 0.138 0.862 35 H 0.157 0.843 36 H 0.164 0.836 37 H 0.407 0.593 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.036 0.964 41 H 0.072 0.928 42 H 0.043 0.957 43 H 0.048 0.952 44 H 0.056 0.944 45 H 0.050 0.950 46 H 0.062 0.938 47 H 0.017 0.983 48 H 0.052 0.948 49 H 0.253 0.747 50 H 0.017 0.983 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.973 -6.120 -9.321 11.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.003 3.997 3 H 0.120 0.880 4 O -0.188 6.188 5 C 0.037 3.963 6 C -0.196 4.196 7 C -0.148 4.148 8 C -0.104 4.104 9 N -0.157 5.157 10 C -0.084 4.084 11 C 0.301 3.699 12 O -0.403 6.403 13 N -0.363 5.363 14 C 0.014 3.986 15 C -0.105 4.105 16 C -0.183 4.183 17 C -0.134 4.134 18 C -0.174 4.174 19 C 0.016 3.984 20 N -0.311 5.311 21 C -0.375 4.375 22 H 0.083 0.917 23 C -0.197 4.197 24 N -0.550 5.550 25 Si 0.728 3.272 26 H -0.214 1.214 27 H -0.216 1.216 28 H -0.205 1.205 29 C 0.057 3.943 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.161 0.839 34 H 0.156 0.844 35 H 0.175 0.825 36 H 0.182 0.818 37 H 0.243 0.757 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.056 0.944 41 H 0.091 0.909 42 H 0.062 0.938 43 H 0.067 0.933 44 H 0.075 0.925 45 H 0.068 0.932 46 H 0.081 0.919 47 H 0.035 0.965 48 H 0.071 0.929 49 H 0.063 0.937 50 H 0.035 0.965 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.028 -7.300 -10.208 12.909 hybrid contribution -1.258 1.915 0.741 2.407 sum -4.285 -5.385 -9.467 11.704 Atomic orbital electron populations 1.22336 0.92432 1.04460 1.04082 1.22305 0.95870 0.97453 0.84081 0.88016 1.86227 1.80683 1.36058 1.15819 1.20275 0.96395 0.91136 0.88445 1.21855 1.03444 0.93920 1.00338 1.22023 0.98660 1.01178 0.92983 1.22666 0.97711 0.91240 0.98811 1.67734 1.14899 1.07447 1.25643 1.22237 0.98905 1.00982 0.86306 1.19868 0.80959 0.84916 0.84107 1.90721 1.37202 1.25817 1.86543 1.45944 1.53283 1.32238 1.04873 1.21426 0.99017 0.95202 0.82945 1.21555 0.96494 1.00041 0.92430 1.21725 0.94484 0.99567 1.02541 1.21349 1.00006 0.97530 0.94483 1.22045 1.00992 0.98208 0.96166 1.20936 0.96422 0.91040 0.89962 1.44001 1.65277 1.22433 0.99427 1.19193 1.18192 0.94189 1.05918 0.91681 1.24986 0.97280 0.97446 0.99990 1.70026 1.28743 1.38613 1.17607 0.86366 0.81402 0.82416 0.77051 1.21404 1.21621 1.20505 1.20843 0.96231 0.86515 0.90662 0.89738 0.90843 0.90521 0.83903 0.84376 0.82544 0.81834 0.75667 0.92044 0.91649 0.94446 0.90902 0.93774 0.93321 0.92529 0.93156 0.91940 0.96521 0.92919 0.93731 0.96486 0.89047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.75 9.12 37.16 0.34 -1.41 16 2 C 0.06 0.79 2.64 -27.88 -0.07 0.72 16 3 H 0.10 1.17 6.27 -51.93 -0.33 0.85 16 4 O -0.28 -3.87 9.34 -39.40 -0.37 -4.24 16 5 C 0.09 1.06 6.63 -39.07 -0.26 0.81 16 6 C -0.17 -1.80 8.40 -39.14 -0.33 -2.12 16 7 C -0.13 -1.19 10.11 -39.47 -0.40 -1.59 16 8 C 0.05 0.52 11.18 -17.54 -0.20 0.32 16 9 N -0.45 -5.43 10.35 -13.13 -0.14 -5.57 16 10 C 0.07 0.91 11.14 -17.38 -0.19 0.72 16 11 C 0.52 8.09 7.23 -10.99 -0.08 8.01 16 12 O -0.53 -10.15 16.50 -14.36 -0.24 -10.39 16 13 N -0.71 -10.59 4.89 -60.30 -0.29 -10.89 16 14 C 0.14 2.16 4.57 -4.04 -0.02 2.14 16 15 C -0.10 -1.70 0.53 -154.39 -0.08 -1.78 16 16 C -0.13 -1.98 7.81 37.16 0.29 -1.69 16 17 C -0.10 -1.48 4.71 -26.69 -0.13 -1.60 16 18 C -0.13 -2.15 5.74 -26.61 -0.15 -2.30 16 19 C 0.14 2.78 6.52 -3.71 -0.02 2.76 16 20 N -0.59 -13.36 2.44 -172.32 -0.42 -13.78 16 21 C -0.25 -6.16 9.60 -15.06 -0.14 -6.30 16 22 H 0.07 1.63 7.88 -52.49 -0.41 1.21 16 23 C 0.00 0.02 4.95 -17.43 -0.09 -0.06 16 24 N -0.90 -23.90 11.05 55.49 0.61 -23.29 16 25 Si 0.90 20.02 29.58 -169.99 -5.03 14.99 16 26 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 28 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 29 C 0.18 3.86 3.73 -3.71 -0.01 3.85 16 30 H 0.08 0.76 7.56 -51.93 -0.39 0.37 16 31 H 0.07 0.63 7.08 -51.93 -0.37 0.27 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.14 1.31 5.65 -52.49 -0.30 1.02 16 34 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.16 1.10 8.06 -52.49 -0.42 0.67 16 36 H 0.16 1.78 8.06 -52.49 -0.42 1.35 16 37 H 0.41 5.85 5.64 -40.82 -0.23 5.62 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 1.28 5.97 -51.93 -0.31 0.97 16 42 H 0.04 0.67 6.86 -51.93 -0.36 0.32 16 43 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.06 1.01 6.34 -51.93 -0.33 0.68 16 47 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 48 H 0.05 1.01 7.93 -51.93 -0.41 0.60 16 49 H 0.25 6.50 8.31 -40.82 -0.34 6.16 16 50 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 51 H 0.09 2.07 4.84 -51.93 -0.25 1.82 16 LS Contribution 397.86 15.07 6.00 6.00 Total: -1.00 -30.43 397.86 -9.32 -39.75 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -7.89 Total: 6.98 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -1.55 Total: 0.44 kcal Atomic # 7 Polarization: -53.29 SS G_CDS: -0.24 Total: -53.53 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.60 Total: -14.62 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.03 Total: 14.99 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.43 -9.32 -39.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324961183.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.094 kcal (2) G-P(sol) polarization free energy of solvation -30.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds