Wall clock time and date at job start Wed Apr 1 2020 04:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.46723 * 2 1 4 4 O 1.42899 * 109.46824 * 239.99974 * 2 1 3 5 5 C 1.35919 * 116.99927 * 86.12728 * 4 2 1 6 6 C 1.39145 * 120.47085 * 354.76422 * 5 4 2 7 7 C 1.38531 * 118.37037 * 179.97438 * 6 5 4 8 8 C 1.38257 * 119.22491 * 0.02562 * 7 6 5 9 9 N 1.31845 * 120.88353 * 359.97438 * 8 7 6 10 10 C 1.31841 * 121.78507 * 0.02562 * 9 8 7 11 11 C 1.50699 * 109.47177 * 119.99927 * 2 1 3 12 12 O 1.21284 * 119.99708 * 119.99831 * 11 2 1 13 13 N 1.34776 * 120.00079 * 299.99967 * 11 2 1 14 14 C 1.46495 * 119.99925 * 180.02562 * 13 11 2 15 15 C 1.53000 * 109.47317 * 180.02562 * 14 13 11 16 16 C 1.53003 * 109.49643 * 60.00003 * 15 14 13 17 17 C 1.53036 * 109.49959 * 180.02562 * 15 14 13 18 18 C 1.53045 * 109.53870 * 181.28105 * 17 15 14 19 19 C 1.53190 * 109.34316 * 298.68985 * 18 17 15 20 20 N 1.46923 * 108.77599 * 54.61467 * 19 18 17 21 21 C 1.36935 * 120.62999 * 126.41313 * 20 19 18 22 22 H 1.07999 * 120.00266 * 333.02046 * 21 20 19 23 23 C 1.38817 * 119.99954 * 153.01598 * 21 20 19 24 24 N 1.31612 * 120.00055 * 343.90703 * 23 21 20 25 25 Si 1.86804 * 119.99762 * 163.90069 * 23 21 20 26 26 H 1.48499 * 109.47027 * 90.00641 * 25 23 21 27 27 H 1.48501 * 109.47054 * 210.00347 * 25 23 21 28 28 H 1.48497 * 109.47111 * 330.00241 * 25 23 21 29 29 C 1.46925 * 118.74053 * 306.39390 * 20 19 18 30 30 H 1.09004 * 109.47082 * 299.99770 * 1 2 3 31 31 H 1.09000 * 109.47820 * 60.00077 * 1 2 3 32 32 H 1.09001 * 109.47417 * 180.02562 * 1 2 3 33 33 H 1.08000 * 120.81453 * 359.71054 * 6 5 4 34 34 H 1.07998 * 120.39187 * 179.97438 * 7 6 5 35 35 H 1.08001 * 119.56175 * 180.02562 * 8 7 6 36 36 H 1.07999 * 119.66132 * 180.02562 * 10 9 8 37 37 H 0.97001 * 120.00358 * 0.02562 * 13 11 2 38 38 H 1.09001 * 109.47044 * 299.99643 * 14 13 11 39 39 H 1.09000 * 109.47475 * 60.00109 * 14 13 11 40 40 H 1.08997 * 109.47476 * 59.99792 * 16 15 14 41 41 H 1.08996 * 109.47459 * 180.02562 * 16 15 14 42 42 H 1.09003 * 109.46935 * 300.00041 * 16 15 14 43 43 H 1.08999 * 109.46265 * 301.33909 * 17 15 14 44 44 H 1.09002 * 109.45803 * 61.30324 * 17 15 14 45 45 H 1.08996 * 109.49553 * 178.72035 * 18 17 15 46 46 H 1.09001 * 109.46562 * 58.63975 * 18 17 15 47 47 H 1.09001 * 109.58136 * 294.83145 * 19 18 17 48 48 H 1.08994 * 109.58869 * 174.40689 * 19 18 17 49 49 H 0.97006 * 120.00206 * 180.02562 * 24 23 21 50 50 H 1.09002 * 109.58893 * 293.81885 * 29 20 19 51 51 H 1.09005 * 109.58642 * 173.39449 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.1348 0.0682 -2.2984 6 6 1.7094 1.3928 -2.3258 7 6 1.8616 2.1088 -3.5019 8 6 2.4262 1.4890 -4.6013 9 7 2.8190 0.2318 -4.5419 10 6 2.6919 -0.4842 -3.4422 11 6 2.0323 -0.7104 1.2305 12 8 2.7296 -1.6965 1.1191 13 7 1.7068 -0.2499 2.4546 14 6 2.1956 -0.9402 3.6507 15 6 1.6850 -0.2194 4.9000 16 6 0.1550 -0.2203 4.9005 17 6 2.1959 -0.9397 6.1499 18 6 1.6595 -0.2383 7.3999 19 6 2.1704 1.2056 7.4302 20 7 1.8072 1.8623 6.1671 21 6 1.1195 3.0465 6.1691 22 1 0.4730 3.2942 6.9980 23 6 1.2534 3.9286 5.1056 24 7 2.2549 3.7954 4.2622 25 14 0.0119 5.3047 4.8716 26 1 0.4667 6.5119 5.6070 27 1 -0.1087 5.6220 3.4259 28 1 -1.3090 4.8740 5.3957 29 6 2.1962 1.2247 4.9019 30 1 -0.3633 0.5138 0.8900 31 1 -0.3635 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.2674 1.8501 -1.4529 34 1 1.5423 3.1389 -3.5597 35 1 2.5478 2.0422 -5.5208 36 1 3.0257 -1.5113 -3.4316 37 1 1.1488 0.5385 2.5436 38 1 1.8326 -1.9680 3.6509 39 1 3.2856 -0.9398 3.6505 40 1 -0.2078 -1.2481 4.9005 41 1 -0.2083 0.2937 5.7904 42 1 -0.2089 0.2934 4.0107 43 1 1.8534 -1.9744 6.1383 44 1 3.2856 -0.9181 6.1615 45 1 2.0051 -0.7652 8.2893 46 1 0.5697 -0.2382 7.3770 47 1 3.2544 1.2072 7.5444 48 1 1.7123 1.7379 8.2638 49 1 2.3487 4.4120 3.5192 50 1 3.2824 1.2279 4.8099 51 1 1.7551 1.7696 4.0673 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324961183.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:13 Heat of formation + Delta-G solvation = -36.702045 kcal Electronic energy + Delta-G solvation = -31604.920210 eV Core-core repulsion = 27504.481910 eV Total energy + Delta-G solvation = -4100.438300 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.95991 -41.02216 -39.97839 -38.92867 -36.35349 -34.99069 -33.70938 -33.21018 -32.54368 -31.57147 -30.98208 -27.98713 -27.43688 -27.01455 -25.72032 -24.69764 -24.01841 -23.63847 -22.11160 -21.37218 -19.65809 -19.54702 -18.64651 -18.47201 -17.75826 -17.33330 -17.08036 -16.75354 -16.60711 -16.07572 -15.77871 -15.46841 -15.31834 -15.22307 -15.06591 -14.81646 -14.74217 -14.47816 -14.29593 -13.99799 -13.79739 -13.75107 -13.39207 -13.16629 -13.10105 -12.99600 -12.70241 -12.66609 -12.55022 -12.32738 -12.25949 -12.12262 -11.82972 -11.71129 -11.39845 -11.24591 -10.97043 -10.94525 -10.74121 -10.61832 -10.48945 -10.13389 -9.49582 -8.60419 -7.80786 -5.25305 0.11622 0.19779 1.42237 1.47232 1.48715 1.52997 1.60585 2.47790 2.55368 2.77386 3.31463 3.39541 3.54849 3.59736 3.63980 3.73108 3.77691 3.88461 3.96083 4.04517 4.05544 4.11653 4.27945 4.37083 4.51349 4.55226 4.56808 4.57757 4.74487 4.74945 4.75685 4.81195 4.98356 5.00508 5.03976 5.06310 5.08890 5.13194 5.19035 5.26696 5.33749 5.39708 5.42249 5.47239 5.52286 5.65914 5.74844 5.81262 6.08817 6.41453 6.44601 6.93000 7.06105 7.21262 7.91702 8.44030 9.24407 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011242 B = 0.003098 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.114597 B = 9035.497595 C =10884.031070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.066 3.934 3 H 0.113 0.887 4 O -0.299 6.299 5 C 0.067 3.933 6 C -0.172 4.172 7 C -0.123 4.123 8 C 0.050 3.950 9 N -0.470 5.470 10 C 0.057 3.943 11 C 0.516 3.484 12 O -0.568 6.568 13 N -0.704 5.704 14 C 0.142 3.858 15 C -0.090 4.090 16 C -0.119 4.119 17 C -0.096 4.096 18 C -0.123 4.123 19 C 0.136 3.864 20 N -0.604 5.604 21 C -0.254 4.254 22 H 0.063 0.937 23 C -0.042 4.042 24 N -0.932 5.932 25 Si 0.957 3.043 26 H -0.295 1.295 27 H -0.288 1.288 28 H -0.272 1.272 29 C 0.195 3.805 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.157 0.843 34 H 0.171 0.829 35 H 0.187 0.813 36 H 0.164 0.836 37 H 0.410 0.590 38 H 0.075 0.925 39 H 0.048 0.952 40 H 0.062 0.938 41 H 0.055 0.945 42 H 0.044 0.956 43 H 0.078 0.922 44 H 0.049 0.951 45 H 0.078 0.922 46 H 0.065 0.935 47 H 0.006 0.994 48 H 0.051 0.949 49 H 0.249 0.751 50 H -0.021 1.021 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.855 -5.881 -9.604 12.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.007 3.993 3 H 0.130 0.870 4 O -0.211 6.211 5 C 0.019 3.981 6 C -0.198 4.198 7 C -0.142 4.142 8 C -0.107 4.107 9 N -0.179 5.179 10 C -0.101 4.101 11 C 0.301 3.699 12 O -0.447 6.447 13 N -0.357 5.357 14 C 0.019 3.981 15 C -0.092 4.092 16 C -0.177 4.177 17 C -0.134 4.134 18 C -0.162 4.162 19 C 0.010 3.990 20 N -0.327 5.327 21 C -0.384 4.384 22 H 0.080 0.920 23 C -0.238 4.238 24 N -0.578 5.578 25 Si 0.785 3.215 26 H -0.223 1.223 27 H -0.213 1.213 28 H -0.197 1.197 29 C 0.069 3.931 30 H 0.114 0.886 31 H 0.109 0.891 32 H 0.091 0.909 33 H 0.175 0.825 34 H 0.188 0.812 35 H 0.204 0.796 36 H 0.181 0.819 37 H 0.248 0.752 38 H 0.094 0.906 39 H 0.067 0.933 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.063 0.937 43 H 0.097 0.903 44 H 0.068 0.932 45 H 0.096 0.904 46 H 0.084 0.916 47 H 0.024 0.976 48 H 0.069 0.931 49 H 0.059 0.941 50 H -0.003 1.003 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.927 -7.073 -10.466 13.559 hybrid contribution -0.596 1.911 0.852 2.175 sum -5.523 -5.162 -9.614 12.230 Atomic orbital electron populations 1.22323 0.90142 1.04677 1.05426 1.22332 0.97460 0.97045 0.82510 0.86999 1.86184 1.81387 1.37072 1.16464 1.20386 0.97677 0.92052 0.87978 1.22113 1.03016 0.93224 1.01473 1.22397 0.97399 1.02441 0.91972 1.23257 0.96537 0.90642 1.00248 1.67756 1.15804 1.08678 1.25669 1.22316 0.99645 1.01395 0.86729 1.20429 0.80062 0.84405 0.84988 1.90694 1.39103 1.27792 1.87158 1.45916 1.52929 1.32106 1.04732 1.21333 0.98094 0.95836 0.82880 1.21351 0.97253 0.97057 0.93588 1.21651 0.93256 1.00971 1.01788 1.21385 0.99674 0.98894 0.93469 1.21918 1.01043 0.95627 0.97598 1.21098 0.95873 0.93341 0.88681 1.44243 1.65241 1.22332 1.00898 1.19444 1.18101 0.95077 1.05795 0.91953 1.25589 0.98693 0.99491 0.99996 1.70173 1.30168 1.39446 1.18037 0.85451 0.79711 0.79531 0.76761 1.22271 1.21346 1.19665 1.20620 0.93763 0.89100 0.89611 0.88649 0.89140 0.90885 0.82543 0.81152 0.79633 0.81896 0.75211 0.90632 0.93316 0.91856 0.92560 0.93664 0.90345 0.93212 0.90385 0.91595 0.97649 0.93065 0.94133 1.00317 0.90853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.09 9.12 71.98 0.66 -2.44 16 2 C 0.07 1.64 2.64 29.85 0.08 1.72 16 3 H 0.11 2.50 6.27 -2.39 -0.01 2.48 16 4 O -0.30 -8.45 9.34 -73.60 -0.69 -9.14 16 5 C 0.07 1.64 6.63 22.60 0.15 1.79 16 6 C -0.17 -3.38 8.40 22.56 0.19 -3.19 16 7 C -0.12 -1.96 10.11 22.34 0.23 -1.73 16 8 C 0.05 0.89 11.18 84.70 0.95 1.84 16 9 N -0.47 -11.12 10.35 -195.44 -2.02 -13.14 16 10 C 0.06 1.41 11.14 84.80 0.94 2.35 16 11 C 0.52 16.18 7.23 87.66 0.63 16.82 16 12 O -0.57 -22.37 16.50 15.99 0.26 -22.10 16 13 N -0.70 -20.85 4.89 -463.07 -2.26 -23.11 16 14 C 0.14 4.40 4.57 86.38 0.39 4.79 16 15 C -0.09 -2.91 0.53 -52.10 -0.03 -2.94 16 16 C -0.12 -3.52 7.81 71.98 0.56 -2.96 16 17 C -0.10 -2.79 4.71 30.62 0.14 -2.65 16 18 C -0.12 -3.66 5.74 30.67 0.18 -3.49 16 19 C 0.14 5.25 6.52 86.36 0.56 5.81 16 20 N -0.60 -27.63 2.44 -699.10 -1.71 -29.33 16 21 C -0.25 -12.80 9.60 84.04 0.81 -11.99 16 22 H 0.06 3.12 7.88 -2.91 -0.02 3.09 16 23 C -0.04 -2.15 4.95 84.86 0.42 -1.73 16 24 N -0.93 -49.97 11.05 21.65 0.24 -49.73 16 25 Si 0.96 40.97 29.58 68.60 2.03 43.00 16 26 H -0.30 -12.96 7.11 99.48 0.71 -12.26 16 27 H -0.29 -12.09 7.11 99.48 0.71 -11.38 16 28 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 29 C 0.20 8.33 3.73 86.36 0.32 8.65 16 30 H 0.09 1.54 7.56 -2.39 -0.02 1.52 16 31 H 0.09 1.36 7.08 -2.39 -0.02 1.35 16 32 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.16 2.54 5.65 -2.91 -0.02 2.53 16 34 H 0.17 1.57 8.06 -2.91 -0.02 1.55 16 35 H 0.19 2.05 8.06 -2.91 -0.02 2.03 16 36 H 0.16 3.78 8.06 -2.91 -0.02 3.76 16 37 H 0.41 11.62 5.64 -92.71 -0.52 11.10 16 38 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.06 1.87 5.97 -2.39 -0.01 1.86 16 42 H 0.04 1.30 6.86 -2.39 -0.02 1.29 16 43 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.07 1.95 6.34 -2.39 -0.02 1.94 16 47 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 48 H 0.05 1.95 7.93 -2.39 -0.02 1.93 16 49 H 0.25 12.99 8.31 -92.70 -0.77 12.22 16 50 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 51 H 0.07 3.39 4.84 -2.38 -0.01 3.38 16 Total: -1.00 -67.32 397.86 3.46 -63.87 By element: Atomic # 1 Polarization: 28.60 SS G_CDS: 0.42 Total: 29.01 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 7.19 Total: 10.67 kcal Atomic # 7 Polarization: -109.56 SS G_CDS: -5.75 Total: -115.31 kcal Atomic # 8 Polarization: -30.82 SS G_CDS: -0.42 Total: -31.24 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 43.00 kcal Total: -67.32 3.46 -63.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324961183.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.167 kcal (2) G-P(sol) polarization free energy of solvation -67.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds