Wall clock time and date at job start Wed Apr 1 2020 05:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08992 * 109.47284 * 2 1 4 4 O 1.42907 * 109.47411 * 239.99368 * 2 1 3 5 5 C 1.35671 * 116.99183 * 90.00172 * 4 2 1 6 6 C 1.38927 * 119.68087 * 179.73112 * 5 4 2 7 7 C 1.38378 * 119.11532 * 179.75377 * 6 5 4 8 8 C 1.38827 * 118.48012 * 0.50825 * 7 6 5 9 9 C 1.38047 * 119.29407 * 359.73265 * 8 7 6 10 10 N 1.31968 * 120.83296 * 0.02562 * 9 8 7 11 11 C 1.50703 * 109.47114 * 119.99912 * 2 1 3 12 12 O 1.21275 * 120.00536 * 114.99942 * 11 2 1 13 13 N 1.34786 * 119.99718 * 295.00055 * 11 2 1 14 14 C 1.46498 * 119.99987 * 180.02562 * 13 11 2 15 15 H 1.09008 * 109.45813 * 324.96944 * 14 13 11 16 16 C 1.53033 * 109.46435 * 84.92921 * 14 13 11 17 17 C 1.52754 * 109.38625 * 181.25913 * 16 14 13 18 18 N 1.46917 * 109.00953 * 305.59028 * 17 16 14 19 19 C 1.36940 * 120.63337 * 233.58420 * 18 17 16 20 20 H 1.07994 * 120.00639 * 152.24055 * 19 18 17 21 21 C 1.38823 * 119.99740 * 332.23714 * 19 18 17 22 22 N 1.31618 * 119.99626 * 335.01286 * 21 19 18 23 23 Si 1.86796 * 119.99694 * 155.01506 * 21 19 18 24 24 H 1.48494 * 109.47681 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46924 * 120.00364 * 23 21 19 26 26 H 1.48502 * 109.46751 * 239.99586 * 23 21 19 27 27 C 1.46921 * 118.74077 * 53.30843 * 18 17 16 28 28 C 1.53043 * 109.45994 * 205.00331 * 14 13 11 29 29 C 1.52992 * 109.49932 * 58.65607 * 28 14 13 30 30 C 1.53001 * 109.49292 * 298.56135 * 28 14 13 31 31 H 1.09002 * 109.47519 * 300.00101 * 1 2 3 32 32 H 1.09002 * 109.47125 * 60.00497 * 1 2 3 33 33 H 1.09000 * 109.46987 * 180.02562 * 1 2 3 34 34 H 1.08002 * 120.44405 * 359.97438 * 6 5 4 35 35 H 1.07992 * 120.76113 * 180.24182 * 7 6 5 36 36 H 1.07999 * 120.35509 * 179.75412 * 8 7 6 37 37 H 1.07997 * 119.58775 * 179.97438 * 9 8 7 38 38 H 0.97004 * 119.99827 * 0.02562 * 13 11 2 39 39 H 1.09003 * 109.49767 * 301.34214 * 16 14 13 40 40 H 1.09005 * 109.49615 * 61.40142 * 16 14 13 41 41 H 1.09007 * 109.51299 * 185.70701 * 17 16 14 42 42 H 1.09004 * 109.43194 * 65.42906 * 17 16 14 43 43 H 0.97000 * 120.00671 * 354.26336 * 22 21 19 44 44 H 1.09001 * 109.58724 * 66.42678 * 27 18 17 45 45 H 1.08998 * 109.59081 * 186.71207 * 27 18 17 46 46 H 1.09005 * 109.47384 * 179.83889 * 29 28 14 47 47 H 1.08999 * 109.47448 * 299.84317 * 29 28 14 48 48 H 1.09005 * 109.46990 * 59.84268 * 29 28 14 49 49 H 1.09000 * 109.47606 * 300.16669 * 30 28 14 50 50 H 1.09004 * 109.47236 * 60.16679 * 30 28 14 51 51 H 1.09001 * 109.47029 * 180.16425 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6738 -1.1667 5 6 2.2117 0.0828 -2.2740 6 6 2.6797 -0.5141 -3.4380 7 6 2.8801 0.2677 -4.5620 8 6 2.6140 1.6277 -4.4784 9 6 2.1558 2.1544 -3.2875 10 7 1.9697 1.3823 -2.2336 11 6 2.0323 -0.7104 1.2305 12 8 2.6529 -1.7466 1.1217 13 7 1.7918 -0.1941 2.4521 14 6 2.2806 -0.8843 3.6483 15 1 2.2332 -1.9619 3.4905 16 6 3.7293 -0.4721 3.9187 17 6 4.2473 -1.2165 5.1479 18 7 3.3320 -0.9787 6.2723 19 6 3.8030 -0.5023 7.4666 20 1 3.1576 0.0790 8.1084 21 6 5.1100 -0.7667 7.8525 22 7 5.7347 -1.8241 7.3792 23 14 5.9819 0.3781 9.0434 24 1 5.0681 1.4845 9.4255 25 1 6.3769 -0.3790 10.2584 26 1 7.1940 0.9385 8.3936 27 6 1.9009 -1.2560 6.0890 28 6 1.4083 -0.5059 4.8475 29 6 -0.0453 -0.8887 4.5627 30 6 1.5017 1.0017 5.0913 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 2.8810 -1.5748 -3.4662 35 1 3.2393 -0.1693 -5.4819 36 1 2.7637 2.2668 -5.3361 37 1 1.9478 3.2118 -3.2171 38 1 1.2950 0.6346 2.5392 39 1 4.3456 -0.7207 3.0547 40 1 3.7741 0.6018 4.1006 41 1 5.2420 -0.8506 5.4028 42 1 4.2925 -2.2842 4.9329 43 1 5.2571 -2.4632 6.8276 44 1 1.7507 -2.3269 5.9523 45 1 1.3481 -0.9185 6.9657 46 1 -0.6658 -0.6216 5.4182 47 1 -0.3953 -0.3547 3.6793 48 1 -0.1107 -1.9626 4.3877 49 1 2.5378 1.2738 5.2926 50 1 1.1511 1.5351 4.2077 51 1 0.8826 1.2704 5.9472 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328098296.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:35 Heat of formation + Delta-G solvation = -17.534544 kcal Electronic energy + Delta-G solvation = -31567.637355 eV Core-core repulsion = 27468.030220 eV Total energy + Delta-G solvation = -4099.607135 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.05628 -40.13241 -38.71821 -37.55720 -34.88946 -33.43205 -32.82363 -32.32110 -31.30955 -30.35840 -29.59294 -26.99117 -25.96281 -25.40808 -24.65797 -23.86586 -23.16542 -22.10074 -20.66354 -20.20338 -18.85119 -18.47810 -17.54539 -17.17637 -16.64597 -16.22278 -15.96538 -15.77334 -14.91669 -14.75737 -14.52987 -14.36891 -14.06690 -13.88012 -13.75188 -13.58157 -13.47218 -13.39528 -13.27033 -12.78299 -12.60379 -12.35047 -12.30282 -12.07033 -11.97666 -11.63586 -11.37576 -11.32193 -10.98569 -10.91371 -10.74250 -10.57299 -10.32993 -10.28517 -10.12154 -9.97422 -9.95378 -9.87104 -9.63045 -9.27069 -8.81093 -8.74071 -8.33712 -6.87163 -6.04958 -3.21261 0.82758 0.93424 2.41417 2.65630 3.43695 3.49088 3.51562 3.54773 3.67323 3.94294 4.50842 4.57318 4.59708 4.66831 4.72015 4.78601 4.87922 4.91630 4.99513 5.13437 5.24656 5.31718 5.36132 5.38672 5.42470 5.51886 5.61829 5.74572 5.77297 5.79737 5.85546 5.86883 5.97921 6.06305 6.08619 6.17758 6.23014 6.31527 6.40767 6.43855 6.54732 6.68868 6.71124 6.80387 6.87292 6.95893 7.09593 7.22181 7.50145 7.60663 8.01974 8.29176 8.59194 9.12819 9.86148 10.30552 11.23868 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017284 B = 0.002406 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.584633 B =11634.694887 C =12271.774887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.072 3.928 3 H 0.112 0.888 4 O -0.275 6.275 5 C 0.325 3.675 6 C -0.189 4.189 7 C -0.040 4.040 8 C -0.216 4.216 9 C 0.140 3.860 10 N -0.543 5.543 11 C 0.512 3.488 12 O -0.521 6.521 13 N -0.715 5.715 14 C 0.166 3.834 15 H 0.082 0.918 16 C -0.146 4.146 17 C 0.153 3.847 18 N -0.595 5.595 19 C -0.348 4.348 20 H 0.057 0.943 21 C -0.024 4.024 22 N -0.916 5.916 23 Si 1.068 2.932 24 H -0.292 1.292 25 H -0.294 1.294 26 H -0.291 1.291 27 C 0.162 3.838 28 C -0.089 4.089 29 C -0.137 4.137 30 C -0.131 4.131 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.137 0.863 37 H 0.159 0.841 38 H 0.396 0.604 39 H 0.054 0.946 40 H 0.064 0.936 41 H 0.082 0.918 42 H 0.018 0.982 43 H 0.270 0.730 44 H 0.018 0.982 45 H 0.060 0.940 46 H 0.055 0.945 47 H 0.047 0.953 48 H 0.052 0.948 49 H 0.075 0.925 50 H 0.034 0.966 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.924 8.351 -21.929 26.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.012 3.988 3 H 0.130 0.870 4 O -0.180 6.180 5 C 0.146 3.854 6 C -0.209 4.209 7 C -0.066 4.066 8 C -0.236 4.236 9 C -0.016 4.016 10 N -0.267 5.267 11 C 0.296 3.704 12 O -0.395 6.395 13 N -0.368 5.368 14 C 0.063 3.937 15 H 0.100 0.900 16 C -0.186 4.186 17 C 0.027 3.973 18 N -0.319 5.319 19 C -0.477 4.477 20 H 0.074 0.926 21 C -0.227 4.227 22 N -0.556 5.556 23 Si 0.898 3.102 24 H -0.219 1.219 25 H -0.222 1.222 26 H -0.217 1.217 27 C 0.035 3.965 28 C -0.091 4.091 29 C -0.195 4.195 30 C -0.188 4.188 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.161 0.839 35 H 0.159 0.841 36 H 0.154 0.846 37 H 0.177 0.823 38 H 0.231 0.769 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.100 0.900 42 H 0.036 0.964 43 H 0.082 0.918 44 H 0.035 0.965 45 H 0.078 0.922 46 H 0.074 0.926 47 H 0.067 0.933 48 H 0.071 0.929 49 H 0.094 0.906 50 H 0.053 0.947 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.277 7.953 -20.363 24.156 hybrid contribution -1.499 -0.046 -1.488 2.113 sum -11.776 7.907 -21.851 26.051 Atomic orbital electron populations 1.22143 0.92492 1.03665 1.03646 1.22124 0.95691 0.98024 0.82952 0.87014 1.86404 1.79693 1.34333 1.17589 1.19930 0.90959 0.87387 0.87117 1.21123 1.05977 1.02407 0.91424 1.21428 0.94053 0.93449 0.97647 1.21982 1.05419 0.96221 1.00022 1.22427 0.92619 0.99197 0.87328 1.67267 1.22076 1.04731 1.32608 1.20137 0.80338 0.85641 0.84288 1.90745 1.39382 1.23095 1.86325 1.46187 1.57484 1.27692 1.05435 1.20997 0.93883 0.96916 0.81932 0.90034 1.22446 0.94780 1.01617 0.99740 1.20833 0.95501 0.95820 0.85170 1.44108 1.01276 1.76714 1.09754 1.19975 0.99870 1.30258 0.97583 0.92559 1.25817 0.96261 0.99020 1.01566 1.70707 1.41035 1.08868 1.35005 0.83498 0.75700 0.75278 0.75746 1.21874 1.22173 1.21735 1.20897 0.86723 0.95228 0.93684 1.21351 0.93960 0.97379 0.96411 1.21807 0.95759 1.01109 1.00776 1.21788 1.03571 0.93972 0.99491 0.90357 0.90928 0.91185 0.83901 0.84116 0.84559 0.82344 0.76892 0.92689 0.91774 0.89977 0.96401 0.91839 0.96464 0.92176 0.92611 0.93344 0.92918 0.90585 0.94664 0.93005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 9.49 37.15 0.35 -1.21 16 2 C 0.07 0.90 2.90 -27.88 -0.08 0.82 16 3 H 0.11 1.30 6.98 -51.93 -0.36 0.94 16 4 O -0.27 -3.88 9.30 -38.57 -0.36 -4.24 16 5 C 0.33 3.92 7.45 -17.12 -0.13 3.80 16 6 C -0.19 -1.85 10.04 -39.27 -0.39 -2.25 16 7 C -0.04 -0.29 10.17 -39.31 -0.40 -0.69 16 8 C -0.22 -1.43 10.11 -39.43 -0.40 -1.83 16 9 C 0.14 1.12 11.18 -17.56 -0.20 0.92 16 10 N -0.54 -5.90 8.65 -13.33 -0.12 -6.02 16 11 C 0.51 7.92 7.14 -10.98 -0.08 7.84 16 12 O -0.52 -10.43 16.17 -14.30 -0.23 -10.66 16 13 N -0.72 -9.99 4.25 -53.76 -0.23 -10.22 16 14 C 0.17 2.84 1.57 -67.89 -0.11 2.73 16 15 H 0.08 1.59 7.58 -51.92 -0.39 1.20 16 16 C -0.15 -2.87 5.29 -26.84 -0.14 -3.01 16 17 C 0.15 3.63 4.66 -3.94 -0.02 3.61 16 18 N -0.60 -14.42 2.30 -172.59 -0.40 -14.82 16 19 C -0.35 -9.43 9.49 -15.05 -0.14 -9.57 16 20 H 0.06 1.53 7.94 -52.49 -0.42 1.12 16 21 C -0.02 -0.69 4.68 -17.43 -0.08 -0.77 16 22 N -0.92 -27.48 12.41 55.49 0.69 -26.80 16 23 Si 1.07 25.22 29.99 -169.99 -5.10 20.12 16 24 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 27 C 0.16 3.28 5.20 -3.71 -0.02 3.26 16 28 C -0.09 -1.42 0.56 -154.39 -0.09 -1.51 16 29 C -0.14 -1.80 8.31 37.15 0.31 -1.49 16 30 C -0.13 -2.00 7.83 37.16 0.29 -1.71 16 31 H 0.08 0.60 7.92 -51.93 -0.41 0.19 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 35 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 36 H 0.14 0.53 8.06 -52.49 -0.42 0.10 16 37 H 0.16 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.40 4.46 6.44 -40.82 -0.26 4.19 16 39 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.06 1.24 6.33 -51.93 -0.33 0.91 16 41 H 0.08 2.19 6.30 -51.93 -0.33 1.86 16 42 H 0.02 0.45 7.87 -51.93 -0.41 0.04 16 43 H 0.27 8.22 6.71 -40.82 -0.27 7.95 16 44 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.06 1.22 7.93 -51.93 -0.41 0.80 16 46 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 47 H 0.05 0.54 7.36 -51.93 -0.38 0.16 16 48 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.08 1.39 5.97 -51.93 -0.31 1.08 16 50 H 0.03 0.43 6.58 -51.93 -0.34 0.09 16 51 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 401.61 15.07 6.05 6.05 Total: -1.00 -33.57 401.61 -9.09 -42.65 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -8.08 Total: 4.97 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -1.32 Total: -1.05 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: -0.05 Total: -57.86 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: -0.59 Total: -14.89 kcal Atomic # 14 Polarization: 25.22 SS G_CDS: -5.10 Total: 20.12 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.57 -9.09 -42.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328098296.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.119 kcal (2) G-P(sol) polarization free energy of solvation -33.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds