Wall clock time and date at job start Wed Apr 1 2020 05:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08992 * 109.47284 * 2 1 4 4 O 1.42907 * 109.47411 * 239.99368 * 2 1 3 5 5 C 1.35671 * 116.99183 * 90.00172 * 4 2 1 6 6 C 1.38927 * 119.68087 * 179.73112 * 5 4 2 7 7 C 1.38378 * 119.11532 * 179.75377 * 6 5 4 8 8 C 1.38827 * 118.48012 * 0.50825 * 7 6 5 9 9 C 1.38047 * 119.29407 * 359.73265 * 8 7 6 10 10 N 1.31968 * 120.83296 * 0.02562 * 9 8 7 11 11 C 1.50703 * 109.47114 * 119.99912 * 2 1 3 12 12 O 1.21275 * 120.00536 * 114.99942 * 11 2 1 13 13 N 1.34786 * 119.99718 * 295.00055 * 11 2 1 14 14 C 1.46498 * 119.99987 * 180.02562 * 13 11 2 15 15 H 1.09008 * 109.45813 * 324.96944 * 14 13 11 16 16 C 1.53033 * 109.46435 * 84.92921 * 14 13 11 17 17 C 1.52754 * 109.38625 * 181.25913 * 16 14 13 18 18 N 1.46917 * 109.00953 * 305.59028 * 17 16 14 19 19 C 1.36940 * 120.63337 * 233.58420 * 18 17 16 20 20 H 1.07994 * 120.00639 * 152.24055 * 19 18 17 21 21 C 1.38823 * 119.99740 * 332.23714 * 19 18 17 22 22 N 1.31618 * 119.99626 * 335.01286 * 21 19 18 23 23 Si 1.86796 * 119.99694 * 155.01506 * 21 19 18 24 24 H 1.48494 * 109.47681 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46924 * 120.00364 * 23 21 19 26 26 H 1.48502 * 109.46751 * 239.99586 * 23 21 19 27 27 C 1.46921 * 118.74077 * 53.30843 * 18 17 16 28 28 C 1.53043 * 109.45994 * 205.00331 * 14 13 11 29 29 C 1.52992 * 109.49932 * 58.65607 * 28 14 13 30 30 C 1.53001 * 109.49292 * 298.56135 * 28 14 13 31 31 H 1.09002 * 109.47519 * 300.00101 * 1 2 3 32 32 H 1.09002 * 109.47125 * 60.00497 * 1 2 3 33 33 H 1.09000 * 109.46987 * 180.02562 * 1 2 3 34 34 H 1.08002 * 120.44405 * 359.97438 * 6 5 4 35 35 H 1.07992 * 120.76113 * 180.24182 * 7 6 5 36 36 H 1.07999 * 120.35509 * 179.75412 * 8 7 6 37 37 H 1.07997 * 119.58775 * 179.97438 * 9 8 7 38 38 H 0.97004 * 119.99827 * 0.02562 * 13 11 2 39 39 H 1.09003 * 109.49767 * 301.34214 * 16 14 13 40 40 H 1.09005 * 109.49615 * 61.40142 * 16 14 13 41 41 H 1.09007 * 109.51299 * 185.70701 * 17 16 14 42 42 H 1.09004 * 109.43194 * 65.42906 * 17 16 14 43 43 H 0.97000 * 120.00671 * 354.26336 * 22 21 19 44 44 H 1.09001 * 109.58724 * 66.42678 * 27 18 17 45 45 H 1.08998 * 109.59081 * 186.71207 * 27 18 17 46 46 H 1.09005 * 109.47384 * 179.83889 * 29 28 14 47 47 H 1.08999 * 109.47448 * 299.84317 * 29 28 14 48 48 H 1.09005 * 109.46990 * 59.84268 * 29 28 14 49 49 H 1.09000 * 109.47606 * 300.16669 * 30 28 14 50 50 H 1.09004 * 109.47236 * 60.16679 * 30 28 14 51 51 H 1.09001 * 109.47029 * 180.16425 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6738 -1.1667 5 6 2.2117 0.0828 -2.2740 6 6 2.6797 -0.5141 -3.4380 7 6 2.8801 0.2677 -4.5620 8 6 2.6140 1.6277 -4.4784 9 6 2.1558 2.1544 -3.2875 10 7 1.9697 1.3823 -2.2336 11 6 2.0323 -0.7104 1.2305 12 8 2.6529 -1.7466 1.1217 13 7 1.7918 -0.1941 2.4521 14 6 2.2806 -0.8843 3.6483 15 1 2.2332 -1.9619 3.4905 16 6 3.7293 -0.4721 3.9187 17 6 4.2473 -1.2165 5.1479 18 7 3.3320 -0.9787 6.2723 19 6 3.8030 -0.5023 7.4666 20 1 3.1576 0.0790 8.1084 21 6 5.1100 -0.7667 7.8525 22 7 5.7347 -1.8241 7.3792 23 14 5.9819 0.3781 9.0434 24 1 5.0681 1.4845 9.4255 25 1 6.3769 -0.3790 10.2584 26 1 7.1940 0.9385 8.3936 27 6 1.9009 -1.2560 6.0890 28 6 1.4083 -0.5059 4.8475 29 6 -0.0453 -0.8887 4.5627 30 6 1.5017 1.0017 5.0913 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 2.8810 -1.5748 -3.4662 35 1 3.2393 -0.1693 -5.4819 36 1 2.7637 2.2668 -5.3361 37 1 1.9478 3.2118 -3.2171 38 1 1.2950 0.6346 2.5392 39 1 4.3456 -0.7207 3.0547 40 1 3.7741 0.6018 4.1006 41 1 5.2420 -0.8506 5.4028 42 1 4.2925 -2.2842 4.9329 43 1 5.2571 -2.4632 6.8276 44 1 1.7507 -2.3269 5.9523 45 1 1.3481 -0.9185 6.9657 46 1 -0.6658 -0.6216 5.4182 47 1 -0.3953 -0.3547 3.6793 48 1 -0.1107 -1.9626 4.3877 49 1 2.5378 1.2738 5.2926 50 1 1.1511 1.5351 4.2077 51 1 0.8826 1.2704 5.9472 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328098296.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:34 Heat of formation + Delta-G solvation = -39.091535 kcal Electronic energy + Delta-G solvation = -31568.572136 eV Core-core repulsion = 27468.030220 eV Total energy + Delta-G solvation = -4100.541916 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.96088 -41.31365 -39.95857 -38.65032 -36.65181 -34.82991 -33.56273 -33.38741 -32.98787 -31.52270 -30.83492 -28.20622 -27.41444 -27.03200 -25.84293 -24.66420 -24.24811 -23.38568 -22.44047 -21.46016 -19.91481 -19.54590 -19.45470 -18.45781 -17.55643 -17.10326 -16.94981 -16.73998 -16.24507 -16.14552 -15.84418 -15.60063 -15.48138 -15.36002 -15.30504 -15.05008 -14.47912 -14.36867 -14.19783 -14.00442 -13.92220 -13.57086 -13.40690 -12.96698 -12.90797 -12.81136 -12.77609 -12.69158 -12.56882 -12.47337 -12.36311 -12.21986 -11.88129 -11.79601 -11.63922 -11.47561 -11.22487 -10.94304 -10.85670 -10.59931 -10.46682 -10.13881 -9.50846 -8.94148 -8.24468 -5.39086 0.19259 0.31268 1.41670 1.45373 1.58416 1.66488 1.81729 2.42129 2.65805 2.81729 3.21589 3.26738 3.43851 3.55073 3.60539 3.80550 3.85537 3.95261 3.96663 4.04740 4.11255 4.22075 4.22276 4.31440 4.36299 4.48228 4.51432 4.63388 4.66910 4.70696 4.74029 4.79764 4.83515 4.86930 4.94671 5.02856 5.05720 5.07517 5.10868 5.12191 5.19583 5.26555 5.28508 5.34250 5.40820 5.52531 5.62142 5.86066 6.15580 6.37489 6.43612 6.84235 7.03515 7.10212 7.77045 8.22784 9.01255 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017284 B = 0.002406 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.584633 B =11634.694887 C =12271.774887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.080 3.920 3 H 0.122 0.878 4 O -0.305 6.305 5 C 0.292 3.708 6 C -0.208 4.208 7 C -0.037 4.037 8 C -0.204 4.204 9 C 0.127 3.873 10 N -0.558 5.558 11 C 0.511 3.489 12 O -0.573 6.573 13 N -0.696 5.696 14 C 0.178 3.822 15 H 0.054 0.946 16 C -0.131 4.131 17 C 0.164 3.836 18 N -0.608 5.608 19 C -0.343 4.343 20 H 0.059 0.941 21 C -0.081 4.081 22 N -0.948 5.948 23 Si 1.118 2.882 24 H -0.268 1.268 25 H -0.294 1.294 26 H -0.291 1.291 27 C 0.156 3.844 28 C -0.076 4.076 29 C -0.131 4.131 30 C -0.126 4.126 31 H 0.104 0.896 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.140 0.860 35 H 0.172 0.828 36 H 0.172 0.828 37 H 0.189 0.811 38 H 0.415 0.585 39 H 0.043 0.957 40 H 0.072 0.928 41 H 0.047 0.953 42 H -0.008 1.008 43 H 0.252 0.748 44 H 0.005 0.995 45 H 0.063 0.937 46 H 0.071 0.929 47 H 0.077 0.923 48 H 0.044 0.956 49 H 0.043 0.957 50 H 0.073 0.927 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.269 11.718 -23.814 30.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.020 3.980 3 H 0.139 0.861 4 O -0.213 6.213 5 C 0.115 3.885 6 C -0.228 4.228 7 C -0.062 4.062 8 C -0.224 4.224 9 C -0.028 4.028 10 N -0.282 5.282 11 C 0.297 3.703 12 O -0.451 6.451 13 N -0.350 5.350 14 C 0.073 3.927 15 H 0.072 0.928 16 C -0.172 4.172 17 C 0.037 3.963 18 N -0.332 5.332 19 C -0.473 4.473 20 H 0.076 0.924 21 C -0.277 4.277 22 N -0.591 5.591 23 Si 0.943 3.057 24 H -0.192 1.192 25 H -0.221 1.221 26 H -0.218 1.218 27 C 0.030 3.970 28 C -0.078 4.078 29 C -0.189 4.189 30 C -0.184 4.184 31 H 0.122 0.878 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.158 0.842 35 H 0.189 0.811 36 H 0.189 0.811 37 H 0.205 0.795 38 H 0.254 0.746 39 H 0.062 0.938 40 H 0.091 0.909 41 H 0.065 0.935 42 H 0.010 0.990 43 H 0.062 0.938 44 H 0.023 0.977 45 H 0.081 0.919 46 H 0.090 0.910 47 H 0.096 0.904 48 H 0.064 0.936 49 H 0.062 0.938 50 H 0.092 0.908 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.692 11.369 -22.270 28.041 hybrid contribution -0.777 -1.089 -1.021 1.683 sum -13.469 10.280 -23.291 28.802 Atomic orbital electron populations 1.22134 0.90054 1.03601 1.05298 1.22104 0.97297 0.97344 0.81211 0.86062 1.86352 1.80638 1.35765 1.18495 1.20168 0.93152 0.88169 0.87060 1.21348 1.06678 1.02858 0.91966 1.21851 0.92913 0.93739 0.97735 1.22418 1.03118 0.96269 1.00567 1.23059 0.92201 1.00314 0.87194 1.67225 1.22631 1.04328 1.34035 1.20817 0.79133 0.84960 0.85373 1.90726 1.41724 1.25605 1.87082 1.45862 1.57035 1.27967 1.04127 1.20603 0.92560 0.95700 0.83803 0.92772 1.22226 0.96526 1.01316 0.97082 1.20557 0.94248 0.94585 0.86909 1.44274 1.02917 1.76861 1.09136 1.20241 0.99892 1.29007 0.98127 0.92374 1.27199 0.97718 0.99620 1.03170 1.70842 1.41171 1.10116 1.36925 0.82828 0.75047 0.74107 0.73736 1.19244 1.22116 1.21811 1.21095 0.84499 0.95274 0.96106 1.21180 0.95578 0.97726 0.93362 1.21772 0.93191 1.01117 1.02778 1.21737 1.01896 0.92991 1.01732 0.87752 0.90121 0.92087 0.84205 0.81062 0.81076 0.79465 0.74635 0.93785 0.90903 0.93462 0.99049 0.93816 0.97677 0.91895 0.91030 0.90442 0.93648 0.93792 0.90808 0.92131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.49 71.98 0.68 -1.94 16 2 C 0.08 1.93 2.90 29.85 0.09 2.02 16 3 H 0.12 2.65 6.98 -2.39 -0.02 2.63 16 4 O -0.31 -8.80 9.30 -70.89 -0.66 -9.46 16 5 C 0.29 6.99 7.45 84.80 0.63 7.63 16 6 C -0.21 -4.01 10.04 22.47 0.23 -3.79 16 7 C -0.04 -0.45 10.17 22.44 0.23 -0.22 16 8 C -0.20 -2.00 10.11 22.37 0.23 -1.78 16 9 C 0.13 1.68 11.18 84.63 0.95 2.62 16 10 N -0.56 -11.30 8.65 -308.95 -2.67 -13.97 16 11 C 0.51 15.73 7.14 87.66 0.63 16.36 16 12 O -0.57 -23.90 16.17 15.97 0.26 -23.64 16 13 N -0.70 -18.43 4.25 -442.40 -1.88 -20.31 16 14 C 0.18 6.10 1.57 45.02 0.07 6.17 16 15 H 0.05 2.20 7.58 -2.38 -0.02 2.18 16 16 C -0.13 -5.35 5.29 30.52 0.16 -5.19 16 17 C 0.16 8.25 4.66 86.22 0.40 8.66 16 18 N -0.61 -30.44 2.30 -699.96 -1.61 -32.05 16 19 C -0.34 -18.94 9.49 84.04 0.80 -18.14 16 20 H 0.06 3.16 7.94 -2.91 -0.02 3.13 16 21 C -0.08 -4.68 4.68 84.87 0.40 -4.28 16 22 N -0.95 -59.57 12.41 21.65 0.27 -59.30 16 23 Si 1.12 51.55 29.99 68.60 2.06 53.60 16 24 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 25 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 26 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 27 C 0.16 6.37 5.20 86.36 0.45 6.82 16 28 C -0.08 -2.34 0.56 -52.11 -0.03 -2.37 16 29 C -0.13 -3.04 8.31 71.98 0.60 -2.45 16 30 C -0.13 -3.51 7.83 71.98 0.56 -2.94 16 31 H 0.10 1.19 7.92 -2.39 -0.02 1.17 16 32 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 35 H 0.17 0.90 8.06 -2.91 -0.02 0.88 16 36 H 0.17 0.47 8.06 -2.91 -0.02 0.45 16 37 H 0.19 1.20 8.06 -2.91 -0.02 1.18 16 38 H 0.41 7.86 6.44 -92.71 -0.60 7.26 16 39 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.07 2.84 6.33 -2.38 -0.02 2.83 16 41 H 0.05 2.69 6.30 -2.38 -0.02 2.67 16 42 H -0.01 -0.46 7.87 -2.38 -0.02 -0.48 16 43 H 0.25 16.33 6.71 -92.71 -0.62 15.71 16 44 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 45 H 0.06 2.51 7.93 -2.39 -0.02 2.49 16 46 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 47 H 0.08 1.38 7.36 -2.39 -0.02 1.36 16 48 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 49 H 0.04 1.53 5.97 -2.39 -0.01 1.51 16 50 H 0.07 1.47 6.58 -2.38 -0.02 1.46 16 51 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -79.49 401.61 3.31 -76.18 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: 0.48 Total: 21.78 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: 7.06 Total: 7.17 kcal Atomic # 7 Polarization: -119.74 SS G_CDS: -5.89 Total: -125.64 kcal Atomic # 8 Polarization: -32.69 SS G_CDS: -0.40 Total: -33.09 kcal Atomic # 14 Polarization: 51.55 SS G_CDS: 2.06 Total: 53.60 kcal Total: -79.49 3.31 -76.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328098296.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.088 kcal (2) G-P(sol) polarization free energy of solvation -79.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds