Wall clock time and date at job start Wed Apr 1 2020 05:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47163 * 2 1 4 4 O 1.42903 * 109.47036 * 119.99565 * 2 1 3 5 5 C 1.35670 * 117.00164 * 269.99961 * 4 2 1 6 6 C 1.38925 * 119.68524 * 180.02562 * 5 4 2 7 7 C 1.38376 * 119.10908 * 179.97438 * 6 5 4 8 8 C 1.38824 * 118.48946 * 359.97438 * 7 6 5 9 9 C 1.38047 * 119.28890 * 359.97438 * 8 7 6 10 10 N 1.31964 * 120.83396 * 359.75170 * 9 8 7 11 11 C 1.50699 * 109.47429 * 239.99811 * 2 1 3 12 12 O 1.21281 * 119.99799 * 245.00132 * 11 2 1 13 13 N 1.34771 * 119.99746 * 64.99751 * 11 2 1 14 14 C 1.46507 * 119.99993 * 180.02562 * 13 11 2 15 15 H 1.09002 * 109.45541 * 324.96987 * 14 13 11 16 16 C 1.53033 * 109.45213 * 84.93751 * 14 13 11 17 17 C 1.52754 * 109.38625 * 181.25415 * 16 14 13 18 18 N 1.46917 * 109.00953 * 305.59028 * 17 16 14 19 19 C 1.36940 * 120.63337 * 233.58420 * 18 17 16 20 20 H 1.07994 * 120.00639 * 152.24055 * 19 18 17 21 21 C 1.38823 * 119.99740 * 332.23714 * 19 18 17 22 22 N 1.31618 * 119.99626 * 335.01286 * 21 19 18 23 23 Si 1.86796 * 119.99694 * 155.01506 * 21 19 18 24 24 H 1.48494 * 109.47681 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46924 * 120.00364 * 23 21 19 26 26 H 1.48502 * 109.46751 * 239.99586 * 23 21 19 27 27 C 1.46921 * 118.74077 * 53.30843 * 18 17 16 28 28 C 1.53043 * 109.46199 * 205.00538 * 14 13 11 29 29 C 1.52992 * 109.49932 * 58.66978 * 28 14 13 30 30 C 1.53001 * 109.49292 * 298.57507 * 28 14 13 31 31 H 1.09000 * 109.47163 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47027 * 300.00198 * 1 2 3 33 33 H 1.09006 * 109.46928 * 60.00330 * 1 2 3 34 34 H 1.07998 * 120.44062 * 359.95082 * 6 5 4 35 35 H 1.08003 * 120.75163 * 179.97438 * 7 6 5 36 36 H 1.08008 * 120.35671 * 179.97438 * 8 7 6 37 37 H 1.08002 * 119.58274 * 179.97438 * 9 8 7 38 38 H 0.96998 * 120.00596 * 0.02562 * 13 11 2 39 39 H 1.09003 * 109.49767 * 301.33715 * 16 14 13 40 40 H 1.09007 * 109.49396 * 61.42635 * 16 14 13 41 41 H 1.09007 * 109.51299 * 185.70701 * 17 16 14 42 42 H 1.09004 * 109.43194 * 65.42906 * 17 16 14 43 43 H 0.97000 * 120.00671 * 354.26336 * 22 21 19 44 44 H 1.09001 * 109.58724 * 66.42678 * 27 18 17 45 45 H 1.09001 * 109.59439 * 186.85327 * 27 18 17 46 46 H 1.09005 * 109.47384 * 179.83889 * 29 28 14 47 47 H 1.08999 * 109.47448 * 299.84317 * 29 28 14 48 48 H 1.09005 * 109.46990 * 59.84268 * 29 28 14 49 49 H 1.09000 * 109.47606 * 300.16669 * 30 28 14 50 50 H 1.09004 * 109.47236 * 60.16679 * 30 28 14 51 51 H 1.09001 * 109.47029 * 180.16425 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.2116 0.0830 2.2741 6 6 2.6747 -0.5147 3.4396 7 6 2.8805 0.2684 4.5618 8 6 2.6150 1.6284 4.4780 9 6 2.1577 2.1551 3.2868 10 7 1.9761 1.3837 2.2316 11 6 2.0324 -0.7104 -1.2304 12 8 2.6530 -1.7467 -1.1213 13 7 1.7919 -0.1942 -2.4519 14 6 2.2798 -0.8852 -3.6481 15 1 3.2402 -1.3529 -3.4310 16 6 1.2718 -1.9592 -4.0631 17 6 1.7967 -2.6995 -5.2919 18 7 2.1046 -1.7218 -6.3443 19 6 1.5695 -1.8541 -7.5978 20 1 1.4081 -0.9800 -8.2112 21 6 1.2345 -3.1119 -8.0803 22 7 1.8404 -4.1806 -7.6081 23 14 -0.0762 -3.2875 -9.3996 24 1 -0.6002 -1.9453 -9.7587 25 1 0.5152 -3.9258 -10.6030 26 1 -1.1852 -4.1313 -8.8863 27 6 2.9927 -0.5959 -6.0246 28 6 2.4501 0.1240 -4.7861 29 6 3.4331 1.2154 -4.3579 30 6 1.0960 0.7558 -5.1150 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8901 34 1 2.8710 -1.5762 3.4695 35 1 3.2394 -0.1687 5.4819 36 1 2.7646 2.2676 5.3357 37 1 1.9493 3.2125 3.2164 38 1 1.2958 0.6347 -2.5391 39 1 1.1335 -2.6644 -3.2435 40 1 0.3182 -1.4894 -4.3042 41 1 1.0374 -3.3948 -5.6499 42 1 2.7008 -3.2476 -5.0263 43 1 2.5776 -4.0847 -6.9850 44 1 3.9963 -0.9688 -5.8200 45 1 3.0225 0.0966 -6.8660 46 1 3.5562 1.9323 -5.1697 47 1 3.0465 1.7272 -3.4767 48 1 4.3970 0.7642 -4.1224 49 1 0.3959 -0.0225 -5.4184 50 1 0.7102 1.2679 -4.2334 51 1 1.2172 1.4723 -5.9274 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328098304.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:39 Heat of formation + Delta-G solvation = -17.477275 kcal Electronic energy + Delta-G solvation = -31547.706977 eV Core-core repulsion = 27448.102325 eV Total energy + Delta-G solvation = -4099.604652 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.06723 -40.13540 -38.72352 -37.56185 -34.88733 -33.44266 -32.83873 -32.29067 -31.32100 -30.36571 -29.60087 -26.98627 -25.97809 -25.38046 -24.65874 -23.87748 -23.15697 -22.13846 -20.65212 -20.19209 -18.84938 -18.51017 -17.54257 -17.17928 -16.65041 -16.23982 -15.93760 -15.73823 -15.01773 -14.81905 -14.47676 -14.33560 -14.01186 -13.91474 -13.77913 -13.56966 -13.48532 -13.39278 -13.23394 -12.81001 -12.58496 -12.34101 -12.31217 -12.02754 -12.00812 -11.63048 -11.38288 -11.32055 -10.98527 -10.91439 -10.73916 -10.57254 -10.33069 -10.30206 -10.12218 -9.98675 -9.95806 -9.86771 -9.63169 -9.27040 -8.82066 -8.74401 -8.33778 -6.87154 -6.04951 -3.21264 0.81041 0.91743 2.40824 2.65615 3.41961 3.48895 3.51500 3.54661 3.67236 3.92792 4.49127 4.57391 4.59649 4.66548 4.72181 4.77576 4.87278 4.91391 4.99236 5.13507 5.26110 5.32422 5.36242 5.38024 5.44629 5.51854 5.60587 5.74609 5.78503 5.83404 5.83958 5.86968 5.97804 6.06439 6.07358 6.18001 6.23098 6.31521 6.40852 6.44023 6.54809 6.68865 6.71098 6.80218 6.87193 6.95208 7.09514 7.22211 7.48585 7.60514 8.01959 8.29143 8.59166 9.12784 9.86131 10.30542 11.23822 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023902 B = 0.002270 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.184425 B =12329.176885 C =12691.211526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.073 3.927 3 H 0.111 0.889 4 O -0.275 6.275 5 C 0.325 3.675 6 C -0.189 4.189 7 C -0.040 4.040 8 C -0.216 4.216 9 C 0.140 3.860 10 N -0.543 5.543 11 C 0.512 3.488 12 O -0.521 6.521 13 N -0.715 5.715 14 C 0.166 3.834 15 H 0.081 0.919 16 C -0.145 4.145 17 C 0.153 3.847 18 N -0.595 5.595 19 C -0.348 4.348 20 H 0.057 0.943 21 C -0.025 4.025 22 N -0.916 5.916 23 Si 1.068 2.932 24 H -0.293 1.293 25 H -0.295 1.295 26 H -0.291 1.291 27 C 0.162 3.838 28 C -0.089 4.089 29 C -0.137 4.137 30 C -0.131 4.131 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.136 0.864 37 H 0.159 0.841 38 H 0.396 0.604 39 H 0.055 0.945 40 H 0.064 0.936 41 H 0.082 0.918 42 H 0.018 0.982 43 H 0.270 0.730 44 H 0.018 0.982 45 H 0.060 0.940 46 H 0.055 0.945 47 H 0.047 0.953 48 H 0.051 0.949 49 H 0.076 0.924 50 H 0.034 0.966 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.901 15.017 22.565 27.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.013 3.987 3 H 0.129 0.871 4 O -0.180 6.180 5 C 0.146 3.854 6 C -0.209 4.209 7 C -0.066 4.066 8 C -0.237 4.237 9 C -0.016 4.016 10 N -0.267 5.267 11 C 0.296 3.704 12 O -0.396 6.396 13 N -0.368 5.368 14 C 0.062 3.938 15 H 0.099 0.901 16 C -0.185 4.185 17 C 0.026 3.974 18 N -0.318 5.318 19 C -0.477 4.477 20 H 0.074 0.926 21 C -0.227 4.227 22 N -0.556 5.556 23 Si 0.898 3.102 24 H -0.219 1.219 25 H -0.222 1.222 26 H -0.217 1.217 27 C 0.035 3.965 28 C -0.091 4.091 29 C -0.195 4.195 30 C -0.188 4.188 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.161 0.839 35 H 0.159 0.841 36 H 0.154 0.846 37 H 0.176 0.824 38 H 0.231 0.769 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.100 0.900 42 H 0.036 0.964 43 H 0.082 0.918 44 H 0.035 0.965 45 H 0.078 0.922 46 H 0.074 0.926 47 H 0.066 0.934 48 H 0.070 0.930 49 H 0.094 0.906 50 H 0.053 0.947 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.579 13.209 20.860 24.741 hybrid contribution 0.917 1.420 1.634 2.351 sum -0.662 14.629 22.494 26.841 Atomic orbital electron populations 1.22151 0.92387 1.03850 1.03652 1.22125 0.95792 0.97896 0.82919 0.87090 1.86409 1.79649 1.34340 1.17601 1.19937 0.90930 0.87360 0.87139 1.21128 1.05996 1.02391 0.91426 1.21429 0.94052 0.93438 0.97653 1.21980 1.05451 0.96233 1.00015 1.22423 0.92643 0.99204 0.87324 1.67267 1.22066 1.04741 1.32651 1.20135 0.80328 0.85680 0.84271 1.90747 1.39544 1.22875 1.86396 1.46184 1.57603 1.27592 1.05409 1.21003 0.98149 0.92537 0.82063 0.90081 1.22440 0.98908 0.97717 0.99441 1.20838 0.98312 0.91852 0.86361 1.44108 1.52817 1.26745 1.08175 1.19973 1.40685 0.94249 0.92756 0.92564 1.25818 1.02749 0.92097 1.02023 1.70707 1.21747 1.30817 1.32330 0.83498 0.76255 0.74820 0.75647 1.21875 1.22186 1.21728 1.20903 0.91988 0.90354 0.93302 1.21353 0.96421 0.94859 0.96476 1.21808 0.98970 0.98204 1.00502 1.21788 0.96905 1.00674 0.99441 0.91061 0.90955 0.90275 0.83883 0.84117 0.84566 0.82363 0.76891 0.92627 0.91757 0.89959 0.96415 0.91844 0.96453 0.92175 0.92593 0.93356 0.92953 0.90559 0.94668 0.93011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.49 37.16 0.35 -1.30 16 2 C 0.07 0.91 2.90 -27.88 -0.08 0.83 16 3 H 0.11 1.25 6.98 -51.93 -0.36 0.89 16 4 O -0.27 -3.86 9.30 -38.57 -0.36 -4.22 16 5 C 0.33 3.87 7.46 -17.12 -0.13 3.74 16 6 C -0.19 -1.82 10.04 -39.28 -0.39 -2.22 16 7 C -0.04 -0.28 10.17 -39.31 -0.40 -0.68 16 8 C -0.22 -1.38 10.11 -39.43 -0.40 -1.78 16 9 C 0.14 1.07 11.18 -17.56 -0.20 0.88 16 10 N -0.54 -5.77 8.64 -13.33 -0.12 -5.88 16 11 C 0.51 7.92 7.14 -10.99 -0.08 7.84 16 12 O -0.52 -10.42 16.17 -14.30 -0.23 -10.66 16 13 N -0.72 -9.98 4.25 -53.76 -0.23 -10.21 16 14 C 0.17 2.83 1.57 -67.89 -0.11 2.72 16 15 H 0.08 1.59 7.58 -51.93 -0.39 1.20 16 16 C -0.14 -2.82 5.29 -26.84 -0.14 -2.96 16 17 C 0.15 3.60 4.66 -3.94 -0.02 3.59 16 18 N -0.60 -14.39 2.30 -172.59 -0.40 -14.78 16 19 C -0.35 -9.40 9.49 -15.05 -0.14 -9.55 16 20 H 0.06 1.53 7.94 -52.49 -0.42 1.11 16 21 C -0.02 -0.69 4.68 -17.43 -0.08 -0.77 16 22 N -0.92 -27.43 12.41 55.49 0.69 -26.74 16 23 Si 1.07 25.17 29.99 -169.99 -5.10 20.07 16 24 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 C 0.16 3.28 5.20 -3.71 -0.02 3.26 16 28 C -0.09 -1.43 0.56 -154.39 -0.09 -1.52 16 29 C -0.14 -1.84 8.31 37.15 0.31 -1.53 16 30 C -0.13 -2.00 7.83 37.16 0.29 -1.70 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.67 7.93 -51.93 -0.41 0.26 16 34 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16 35 H 0.14 0.57 8.06 -52.48 -0.42 0.15 16 36 H 0.14 0.49 8.06 -52.48 -0.42 0.07 16 37 H 0.16 0.75 8.06 -52.49 -0.42 0.32 16 38 H 0.40 4.45 6.45 -40.82 -0.26 4.19 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.06 1.23 6.33 -51.92 -0.33 0.90 16 41 H 0.08 2.18 6.30 -51.93 -0.33 1.85 16 42 H 0.02 0.44 7.87 -51.93 -0.41 0.03 16 43 H 0.27 8.21 6.71 -40.82 -0.27 7.93 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16 46 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.05 0.57 7.37 -51.93 -0.38 0.18 16 48 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 49 H 0.08 1.39 5.97 -51.93 -0.31 1.08 16 50 H 0.03 0.43 6.58 -51.93 -0.34 0.09 16 51 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 401.61 15.07 6.05 6.05 Total: -1.00 -33.46 401.61 -9.09 -42.54 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -8.08 Total: 4.98 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -1.32 Total: -1.15 kcal Atomic # 7 Polarization: -57.56 SS G_CDS: -0.05 Total: -57.61 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: -0.59 Total: -14.88 kcal Atomic # 14 Polarization: 25.17 SS G_CDS: -5.10 Total: 20.07 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.46 -9.09 -42.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328098304.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.067 kcal (2) G-P(sol) polarization free energy of solvation -33.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds