Wall clock time and date at job start Wed Apr 1 2020 05:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47163 * 2 1 4 4 O 1.42903 * 109.47036 * 119.99565 * 2 1 3 5 5 C 1.35670 * 117.00164 * 269.99961 * 4 2 1 6 6 C 1.38925 * 119.68524 * 180.02562 * 5 4 2 7 7 C 1.38376 * 119.10908 * 179.97438 * 6 5 4 8 8 C 1.38824 * 118.48946 * 359.97438 * 7 6 5 9 9 C 1.38047 * 119.28890 * 359.97438 * 8 7 6 10 10 N 1.31964 * 120.83396 * 359.75170 * 9 8 7 11 11 C 1.50699 * 109.47429 * 239.99811 * 2 1 3 12 12 O 1.21281 * 119.99799 * 245.00132 * 11 2 1 13 13 N 1.34771 * 119.99746 * 64.99751 * 11 2 1 14 14 C 1.46507 * 119.99993 * 180.02562 * 13 11 2 15 15 H 1.09002 * 109.45541 * 324.96987 * 14 13 11 16 16 C 1.53033 * 109.45213 * 84.93751 * 14 13 11 17 17 C 1.52754 * 109.38625 * 181.25415 * 16 14 13 18 18 N 1.46917 * 109.00953 * 305.59028 * 17 16 14 19 19 C 1.36940 * 120.63337 * 233.58420 * 18 17 16 20 20 H 1.07994 * 120.00639 * 152.24055 * 19 18 17 21 21 C 1.38823 * 119.99740 * 332.23714 * 19 18 17 22 22 N 1.31618 * 119.99626 * 335.01286 * 21 19 18 23 23 Si 1.86796 * 119.99694 * 155.01506 * 21 19 18 24 24 H 1.48494 * 109.47681 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46924 * 120.00364 * 23 21 19 26 26 H 1.48502 * 109.46751 * 239.99586 * 23 21 19 27 27 C 1.46921 * 118.74077 * 53.30843 * 18 17 16 28 28 C 1.53043 * 109.46199 * 205.00538 * 14 13 11 29 29 C 1.52992 * 109.49932 * 58.66978 * 28 14 13 30 30 C 1.53001 * 109.49292 * 298.57507 * 28 14 13 31 31 H 1.09000 * 109.47163 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47027 * 300.00198 * 1 2 3 33 33 H 1.09006 * 109.46928 * 60.00330 * 1 2 3 34 34 H 1.07998 * 120.44062 * 359.95082 * 6 5 4 35 35 H 1.08003 * 120.75163 * 179.97438 * 7 6 5 36 36 H 1.08008 * 120.35671 * 179.97438 * 8 7 6 37 37 H 1.08002 * 119.58274 * 179.97438 * 9 8 7 38 38 H 0.96998 * 120.00596 * 0.02562 * 13 11 2 39 39 H 1.09003 * 109.49767 * 301.33715 * 16 14 13 40 40 H 1.09007 * 109.49396 * 61.42635 * 16 14 13 41 41 H 1.09007 * 109.51299 * 185.70701 * 17 16 14 42 42 H 1.09004 * 109.43194 * 65.42906 * 17 16 14 43 43 H 0.97000 * 120.00671 * 354.26336 * 22 21 19 44 44 H 1.09001 * 109.58724 * 66.42678 * 27 18 17 45 45 H 1.09001 * 109.59439 * 186.85327 * 27 18 17 46 46 H 1.09005 * 109.47384 * 179.83889 * 29 28 14 47 47 H 1.08999 * 109.47448 * 299.84317 * 29 28 14 48 48 H 1.09005 * 109.46990 * 59.84268 * 29 28 14 49 49 H 1.09000 * 109.47606 * 300.16669 * 30 28 14 50 50 H 1.09004 * 109.47236 * 60.16679 * 30 28 14 51 51 H 1.09001 * 109.47029 * 180.16425 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.2116 0.0830 2.2741 6 6 2.6747 -0.5147 3.4396 7 6 2.8805 0.2684 4.5618 8 6 2.6150 1.6284 4.4780 9 6 2.1577 2.1551 3.2868 10 7 1.9761 1.3837 2.2316 11 6 2.0324 -0.7104 -1.2304 12 8 2.6530 -1.7467 -1.1213 13 7 1.7919 -0.1942 -2.4519 14 6 2.2798 -0.8852 -3.6481 15 1 3.2402 -1.3529 -3.4310 16 6 1.2718 -1.9592 -4.0631 17 6 1.7967 -2.6995 -5.2919 18 7 2.1046 -1.7218 -6.3443 19 6 1.5695 -1.8541 -7.5978 20 1 1.4081 -0.9800 -8.2112 21 6 1.2345 -3.1119 -8.0803 22 7 1.8404 -4.1806 -7.6081 23 14 -0.0762 -3.2875 -9.3996 24 1 -0.6002 -1.9453 -9.7587 25 1 0.5152 -3.9258 -10.6030 26 1 -1.1852 -4.1313 -8.8863 27 6 2.9927 -0.5959 -6.0246 28 6 2.4501 0.1240 -4.7861 29 6 3.4331 1.2154 -4.3579 30 6 1.0960 0.7558 -5.1150 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8901 34 1 2.8710 -1.5762 3.4695 35 1 3.2394 -0.1687 5.4819 36 1 2.7646 2.2676 5.3357 37 1 1.9493 3.2125 3.2164 38 1 1.2958 0.6347 -2.5391 39 1 1.1335 -2.6644 -3.2435 40 1 0.3182 -1.4894 -4.3042 41 1 1.0374 -3.3948 -5.6499 42 1 2.7008 -3.2476 -5.0263 43 1 2.5776 -4.0847 -6.9850 44 1 3.9963 -0.9688 -5.8200 45 1 3.0225 0.0966 -6.8660 46 1 3.5562 1.9323 -5.1697 47 1 3.0465 1.7272 -3.4767 48 1 4.3970 0.7642 -4.1224 49 1 0.3959 -0.0225 -5.4184 50 1 0.7102 1.2679 -4.2334 51 1 1.2172 1.4723 -5.9274 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328098304.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:38 Heat of formation + Delta-G solvation = -38.891177 kcal Electronic energy + Delta-G solvation = -31548.635553 eV Core-core repulsion = 27448.102325 eV Total energy + Delta-G solvation = -4100.533228 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.96088 -41.31231 -39.95862 -38.65068 -36.64861 -34.84097 -33.54409 -33.37190 -33.00226 -31.52138 -30.84096 -28.20816 -27.43821 -27.02535 -25.82419 -24.66015 -24.23854 -23.41313 -22.43017 -21.44478 -19.91525 -19.56407 -19.45451 -18.44286 -17.55672 -17.03596 -16.97701 -16.73659 -16.25559 -16.10515 -15.98649 -15.58565 -15.47925 -15.30795 -15.20244 -15.09762 -14.50776 -14.37941 -14.18036 -14.00443 -13.92789 -13.58114 -13.40828 -12.96201 -12.92971 -12.80515 -12.78947 -12.70242 -12.56407 -12.46786 -12.36241 -12.22146 -11.87668 -11.79961 -11.63744 -11.47522 -11.22037 -10.93989 -10.85381 -10.59697 -10.46375 -10.13597 -9.50584 -8.93734 -8.23943 -5.38618 0.19730 0.31620 1.41134 1.45666 1.58895 1.66918 1.82161 2.42106 2.66207 2.82222 3.22090 3.26708 3.43899 3.54968 3.60579 3.80542 3.85367 3.94308 3.96084 4.04774 4.11592 4.22435 4.22977 4.31660 4.36217 4.47788 4.52377 4.62558 4.65040 4.70267 4.73244 4.80239 4.82897 4.88084 4.93908 5.02743 5.03835 5.07373 5.10631 5.13069 5.19113 5.27211 5.29073 5.33162 5.40579 5.52978 5.62157 5.86494 6.16034 6.37872 6.43697 6.84562 7.03840 7.10214 7.77507 8.23157 9.01676 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023902 B = 0.002270 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.184425 B =12329.176885 C =12691.211526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.082 3.918 3 H 0.127 0.873 4 O -0.306 6.306 5 C 0.292 3.708 6 C -0.208 4.208 7 C -0.037 4.037 8 C -0.204 4.204 9 C 0.128 3.872 10 N -0.557 5.557 11 C 0.511 3.489 12 O -0.573 6.573 13 N -0.696 5.696 14 C 0.178 3.822 15 H 0.052 0.948 16 C -0.130 4.130 17 C 0.163 3.837 18 N -0.608 5.608 19 C -0.342 4.342 20 H 0.058 0.942 21 C -0.082 4.082 22 N -0.948 5.948 23 Si 1.118 2.882 24 H -0.268 1.268 25 H -0.295 1.295 26 H -0.291 1.291 27 C 0.156 3.844 28 C -0.076 4.076 29 C -0.131 4.131 30 C -0.126 4.126 31 H 0.055 0.945 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.139 0.861 35 H 0.172 0.828 36 H 0.172 0.828 37 H 0.189 0.811 38 H 0.415 0.585 39 H 0.046 0.954 40 H 0.075 0.925 41 H 0.048 0.952 42 H -0.009 1.009 43 H 0.252 0.748 44 H 0.004 0.996 45 H 0.063 0.937 46 H 0.071 0.929 47 H 0.074 0.926 48 H 0.043 0.957 49 H 0.045 0.955 50 H 0.073 0.927 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.039 19.182 24.550 31.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.022 3.978 3 H 0.145 0.855 4 O -0.213 6.213 5 C 0.115 3.885 6 C -0.229 4.229 7 C -0.062 4.062 8 C -0.224 4.224 9 C -0.027 4.027 10 N -0.282 5.282 11 C 0.297 3.703 12 O -0.452 6.452 13 N -0.350 5.350 14 C 0.073 3.927 15 H 0.070 0.930 16 C -0.170 4.170 17 C 0.036 3.964 18 N -0.332 5.332 19 C -0.472 4.472 20 H 0.076 0.924 21 C -0.277 4.277 22 N -0.590 5.590 23 Si 0.943 3.057 24 H -0.192 1.192 25 H -0.222 1.222 26 H -0.218 1.218 27 C 0.030 3.970 28 C -0.079 4.079 29 C -0.189 4.189 30 C -0.183 4.183 31 H 0.074 0.926 32 H 0.100 0.900 33 H 0.120 0.880 34 H 0.157 0.843 35 H 0.189 0.811 36 H 0.189 0.811 37 H 0.206 0.794 38 H 0.254 0.746 39 H 0.064 0.936 40 H 0.093 0.907 41 H 0.066 0.934 42 H 0.009 0.991 43 H 0.062 0.938 44 H 0.022 0.978 45 H 0.081 0.919 46 H 0.090 0.910 47 H 0.093 0.907 48 H 0.062 0.938 49 H 0.064 0.936 50 H 0.092 0.908 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.727 17.459 22.871 28.902 hybrid contribution 1.371 0.195 1.147 1.798 sum -1.356 17.654 24.018 29.839 Atomic orbital electron populations 1.22141 0.90559 1.03372 1.05244 1.22081 0.96902 0.97565 0.81215 0.85535 1.86359 1.80577 1.35833 1.18537 1.20165 0.93163 0.88171 0.87020 1.21343 1.06764 1.02797 0.91995 1.21848 0.92922 0.93759 0.97702 1.22421 1.03111 0.96239 1.00591 1.23066 0.92133 1.00347 0.87144 1.67223 1.22574 1.04268 1.34097 1.20812 0.79131 0.84992 0.85367 1.90728 1.41896 1.25371 1.87155 1.45860 1.57246 1.27785 1.04088 1.20608 0.95988 0.92410 0.83705 0.92980 1.22211 0.99827 0.97986 0.96955 1.20574 0.96170 0.91704 0.87944 1.44273 1.53716 1.27591 1.07573 1.20237 1.39369 0.94068 0.93539 0.92382 1.27200 1.04392 0.92136 1.04012 1.70843 1.22567 1.31791 1.33827 0.82826 0.73804 0.75903 0.73169 1.19232 1.22198 1.21763 1.21091 0.90980 0.89358 0.95554 1.21179 0.98065 0.94915 0.93709 1.21769 0.97649 0.97306 1.02154 1.21736 0.95085 0.99996 1.01513 0.92566 0.89954 0.87986 0.84304 0.81106 0.81056 0.79378 0.74629 0.93551 0.90695 0.93365 0.99132 0.93835 0.97761 0.91900 0.90980 0.90715 0.93798 0.93581 0.90777 0.92192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 9.49 71.98 0.68 -2.23 16 2 C 0.08 1.98 2.90 29.85 0.09 2.06 16 3 H 0.13 2.61 6.98 -2.39 -0.02 2.59 16 4 O -0.31 -8.78 9.30 -70.88 -0.66 -9.44 16 5 C 0.29 6.85 7.46 84.79 0.63 7.48 16 6 C -0.21 -3.93 10.04 22.47 0.23 -3.71 16 7 C -0.04 -0.42 10.17 22.44 0.23 -0.20 16 8 C -0.20 -1.84 10.11 22.36 0.23 -1.62 16 9 C 0.13 1.57 11.18 84.63 0.95 2.52 16 10 N -0.56 -10.82 8.64 -308.95 -2.67 -13.49 16 11 C 0.51 15.73 7.14 87.66 0.63 16.36 16 12 O -0.57 -23.92 16.17 15.96 0.26 -23.66 16 13 N -0.70 -18.44 4.25 -442.40 -1.88 -20.32 16 14 C 0.18 6.08 1.57 45.02 0.07 6.15 16 15 H 0.05 2.13 7.58 -2.39 -0.02 2.11 16 16 C -0.13 -5.21 5.29 30.52 0.16 -5.05 16 17 C 0.16 8.16 4.66 86.22 0.40 8.56 16 18 N -0.61 -30.34 2.30 -699.95 -1.61 -31.95 16 19 C -0.34 -18.86 9.49 84.04 0.80 -18.06 16 20 H 0.06 3.14 7.94 -2.91 -0.02 3.12 16 21 C -0.08 -4.69 4.68 84.87 0.40 -4.29 16 22 N -0.95 -59.42 12.41 21.65 0.27 -59.15 16 23 Si 1.12 51.42 29.99 68.60 2.06 53.47 16 24 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 25 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 26 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 27 C 0.16 6.39 5.20 86.36 0.45 6.84 16 28 C -0.08 -2.37 0.56 -52.11 -0.03 -2.40 16 29 C -0.13 -3.15 8.31 71.98 0.60 -2.56 16 30 C -0.13 -3.48 7.83 71.98 0.56 -2.92 16 31 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.10 1.39 7.93 -2.38 -0.02 1.37 16 34 H 0.14 2.56 8.06 -2.91 -0.02 2.53 16 35 H 0.17 0.81 8.06 -2.91 -0.02 0.79 16 36 H 0.17 0.34 8.06 -2.91 -0.02 0.31 16 37 H 0.19 1.01 8.06 -2.91 -0.02 0.98 16 38 H 0.41 7.86 6.45 -92.71 -0.60 7.26 16 39 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.07 2.86 6.33 -2.38 -0.02 2.84 16 41 H 0.05 2.72 6.30 -2.38 -0.02 2.71 16 42 H -0.01 -0.50 7.87 -2.38 -0.02 -0.52 16 43 H 0.25 16.30 6.71 -92.71 -0.62 15.68 16 44 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 45 H 0.06 2.52 7.93 -2.39 -0.02 2.50 16 46 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 47 H 0.07 1.43 7.37 -2.39 -0.02 1.42 16 48 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 49 H 0.05 1.58 5.97 -2.39 -0.01 1.56 16 50 H 0.07 1.46 6.58 -2.38 -0.02 1.45 16 51 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -79.08 401.61 3.31 -75.78 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: 0.48 Total: 21.82 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: 7.06 Total: 6.95 kcal Atomic # 7 Polarization: -119.03 SS G_CDS: -5.89 Total: -124.92 kcal Atomic # 8 Polarization: -32.70 SS G_CDS: -0.40 Total: -33.10 kcal Atomic # 14 Polarization: 51.42 SS G_CDS: 2.06 Total: 53.47 kcal Total: -79.08 3.31 -75.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328098304.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.886 kcal (2) G-P(sol) polarization free energy of solvation -79.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds