Wall clock time and date at job start Wed Apr 1 2020 05:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47145 * 2 1 4 4 O 1.42897 * 109.47306 * 239.99536 * 2 1 3 5 5 C 1.35675 * 116.99652 * 89.99941 * 4 2 1 6 6 C 1.38927 * 119.68362 * 179.97438 * 5 4 2 7 7 C 1.38378 * 119.10813 * 179.97438 * 6 5 4 8 8 C 1.38826 * 118.49035 * 0.02562 * 7 6 5 9 9 C 1.38045 * 119.28926 * 0.02562 * 8 7 6 10 10 N 1.31969 * 120.83038 * 359.74237 * 9 8 7 11 11 C 1.50703 * 109.46940 * 119.99662 * 2 1 3 12 12 O 1.21282 * 119.99812 * 120.00301 * 11 2 1 13 13 N 1.34778 * 120.00048 * 300.00078 * 11 2 1 14 14 C 1.46501 * 120.00001 * 180.02562 * 13 11 2 15 15 H 1.08998 * 109.46034 * 34.99595 * 14 13 11 16 16 C 1.53045 * 109.45574 * 275.03024 * 14 13 11 17 17 C 1.53189 * 109.31144 * 178.62927 * 16 14 13 18 18 N 1.46929 * 108.77629 * 54.62916 * 17 16 14 19 19 C 1.36948 * 120.62761 * 126.36977 * 18 17 16 20 20 H 1.07996 * 120.00257 * 332.59328 * 19 18 17 21 21 C 1.38809 * 119.99563 * 152.58947 * 19 18 17 22 22 N 1.31618 * 119.99793 * 159.30782 * 21 19 18 23 23 Si 1.86799 * 120.00210 * 339.31134 * 21 19 18 24 24 H 1.48502 * 109.47406 * 92.94656 * 23 21 19 25 25 H 1.48504 * 109.47139 * 212.94797 * 23 21 19 26 26 H 1.48494 * 109.47265 * 332.94524 * 23 21 19 27 27 C 1.46923 * 118.74214 * 306.39211 * 18 17 16 28 28 C 1.53035 * 109.46140 * 154.97605 * 14 13 11 29 29 C 1.53001 * 109.49382 * 301.31940 * 28 14 13 30 30 C 1.52992 * 109.49997 * 61.41697 * 28 14 13 31 31 H 1.08994 * 109.47219 * 299.99995 * 1 2 3 32 32 H 1.08995 * 109.47112 * 60.00495 * 1 2 3 33 33 H 1.09007 * 109.46647 * 180.02562 * 1 2 3 34 34 H 1.07996 * 120.44334 * 359.96198 * 6 5 4 35 35 H 1.08002 * 120.75258 * 179.97438 * 7 6 5 36 36 H 1.08005 * 120.35775 * 179.97438 * 8 7 6 37 37 H 1.08004 * 119.58406 * 179.97438 * 9 8 7 38 38 H 0.96998 * 119.99976 * 359.97438 * 13 11 2 39 39 H 1.09005 * 109.49412 * 298.57535 * 16 14 13 40 40 H 1.08994 * 109.50071 * 58.67340 * 16 14 13 41 41 H 1.09002 * 109.59085 * 174.41605 * 17 16 14 42 42 H 1.08997 * 109.58638 * 294.70130 * 17 16 14 43 43 H 0.96999 * 120.00155 * 180.02562 * 22 21 19 44 44 H 1.09000 * 109.58796 * 173.39731 * 27 18 17 45 45 H 1.09005 * 109.58648 * 293.68048 * 27 18 17 46 46 H 1.08997 * 109.47354 * 59.99808 * 29 28 14 47 47 H 1.09004 * 109.47055 * 180.02562 * 29 28 14 48 48 H 1.09008 * 109.47212 * 300.00147 * 29 28 14 49 49 H 1.08994 * 109.47454 * 60.00182 * 30 28 14 50 50 H 1.09007 * 109.47181 * 180.02562 * 30 28 14 51 51 H 1.08999 * 109.46968 * 299.99634 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.2117 0.0828 -2.2741 6 6 2.6748 -0.5150 -3.4395 7 6 2.8795 0.2678 -4.5621 8 6 2.6130 1.6277 -4.4787 9 6 2.1557 2.1545 -3.2875 10 7 1.9657 1.3816 -2.2349 11 6 2.0323 -0.7104 1.2305 12 8 2.7296 -1.6964 1.1193 13 7 1.7066 -0.2498 2.4546 14 6 2.1954 -0.9401 3.6509 15 1 3.1947 -1.3318 3.4612 16 6 1.2518 -2.0950 3.9943 17 6 1.7843 -2.8354 5.2251 18 7 1.9745 -1.8672 6.3138 19 6 1.4011 -2.0747 7.5401 20 1 0.4930 -2.6536 7.6206 21 6 1.9874 -1.5410 8.6795 22 7 1.2719 -1.3755 9.7718 23 14 3.7916 -1.0575 8.6627 24 1 3.9162 0.3780 8.3037 25 1 4.3773 -1.2839 10.0085 26 1 4.5159 -1.8825 7.6627 27 6 2.7911 -0.6721 6.0619 28 6 2.2471 0.0438 4.8219 29 6 3.1652 1.2146 4.4649 30 6 0.8392 0.5678 5.1112 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3633 -1.0278 0.0005 34 1 2.8725 -1.5763 -3.4688 35 1 3.2393 -0.1691 -5.4819 36 1 2.7626 2.2668 -5.3364 37 1 1.9472 3.2119 -3.2173 38 1 1.1493 0.5390 2.5436 39 1 0.2580 -1.7014 4.2083 40 1 1.1972 -2.7833 3.1510 41 1 1.0664 -3.5955 5.5334 42 1 2.7361 -3.3084 4.9835 43 1 1.6814 -1.0022 10.5679 44 1 2.7375 -0.0049 6.9221 45 1 3.8268 -0.9664 5.8917 46 1 2.7796 1.7223 3.5808 47 1 3.2021 1.9149 5.2994 48 1 4.1684 0.8404 4.2604 49 1 0.1862 -0.2666 5.3667 50 1 0.8766 1.2689 5.9450 51 1 0.4516 1.0751 4.2276 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328098306.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:43 Heat of formation + Delta-G solvation = -9.103582 kcal Electronic energy + Delta-G solvation = -31646.796717 eV Core-core repulsion = 27547.555176 eV Total energy + Delta-G solvation = -4099.241541 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.09444 -40.19558 -38.78968 -37.61815 -34.79955 -33.29519 -32.85121 -32.42736 -31.84397 -30.45231 -29.79994 -26.93599 -26.29048 -25.58381 -24.71764 -23.89918 -23.21056 -22.39515 -20.55576 -20.28172 -18.92798 -18.68179 -17.69064 -16.82427 -16.60596 -16.26741 -15.94322 -15.79321 -15.08190 -15.03419 -14.80402 -14.37299 -14.22715 -13.91391 -13.76872 -13.65544 -13.46633 -13.38898 -13.20836 -12.78521 -12.59064 -12.45696 -12.33331 -12.06396 -12.03108 -11.76583 -11.71186 -11.40998 -11.24444 -11.11803 -10.76255 -10.68844 -10.44615 -10.32229 -10.17716 -9.99322 -9.92722 -9.80520 -9.61429 -9.43729 -8.84709 -8.80804 -8.61716 -6.97779 -5.95525 -3.30952 0.79182 0.89949 2.36534 2.61836 3.30700 3.39351 3.45386 3.48976 3.52140 3.90811 4.47309 4.52150 4.53636 4.63775 4.69202 4.75219 4.85073 4.88614 4.91209 4.96664 5.23083 5.26274 5.30237 5.35697 5.41624 5.42549 5.58763 5.69282 5.72523 5.80010 5.82088 5.83906 5.91838 6.01051 6.05205 6.09281 6.21497 6.26389 6.32965 6.40540 6.46423 6.57823 6.63653 6.68540 6.73160 6.81843 6.91865 7.01242 7.46468 7.55930 7.95450 8.23586 8.32381 8.93387 9.71613 10.09322 11.20358 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.026085 B = 0.002336 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.176387 B =11981.611676 C =12157.278035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.072 3.928 3 H 0.113 0.887 4 O -0.275 6.275 5 C 0.325 3.675 6 C -0.189 4.189 7 C -0.040 4.040 8 C -0.216 4.216 9 C 0.140 3.860 10 N -0.543 5.543 11 C 0.513 3.487 12 O -0.523 6.523 13 N -0.714 5.714 14 C 0.165 3.835 15 H 0.083 0.917 16 C -0.145 4.145 17 C 0.150 3.850 18 N -0.603 5.603 19 C -0.256 4.256 20 H 0.086 0.914 21 C 0.024 3.976 22 N -0.907 5.907 23 Si 0.877 3.123 24 H -0.288 1.288 25 H -0.303 1.303 26 H -0.270 1.270 27 C 0.140 3.860 28 C -0.089 4.089 29 C -0.140 4.140 30 C -0.130 4.130 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.137 0.863 37 H 0.159 0.841 38 H 0.398 0.602 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.066 0.934 42 H 0.025 0.975 43 H 0.262 0.738 44 H 0.078 0.922 45 H 0.026 0.974 46 H 0.050 0.950 47 H 0.057 0.943 48 H 0.051 0.949 49 H 0.076 0.924 50 H 0.055 0.945 51 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.103 8.750 -27.469 28.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.012 3.988 3 H 0.130 0.870 4 O -0.180 6.180 5 C 0.146 3.854 6 C -0.209 4.209 7 C -0.066 4.066 8 C -0.237 4.237 9 C -0.016 4.016 10 N -0.267 5.267 11 C 0.297 3.703 12 O -0.398 6.398 13 N -0.367 5.367 14 C 0.061 3.939 15 H 0.101 0.899 16 C -0.185 4.185 17 C 0.024 3.976 18 N -0.326 5.326 19 C -0.384 4.384 20 H 0.104 0.896 21 C -0.175 4.175 22 N -0.550 5.550 23 Si 0.708 3.292 24 H -0.216 1.216 25 H -0.232 1.232 26 H -0.195 1.195 27 C 0.013 3.987 28 C -0.091 4.091 29 C -0.198 4.198 30 C -0.187 4.187 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.161 0.839 35 H 0.159 0.841 36 H 0.154 0.846 37 H 0.177 0.823 38 H 0.233 0.767 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.043 0.957 43 H 0.072 0.928 44 H 0.096 0.904 45 H 0.044 0.956 46 H 0.069 0.931 47 H 0.076 0.924 48 H 0.070 0.930 49 H 0.095 0.905 50 H 0.074 0.926 51 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 0.119 8.096 -26.508 27.717 hybrid contribution 1.044 0.619 -0.567 1.340 sum 1.163 8.716 -27.075 28.467 Atomic orbital electron populations 1.22162 0.92410 1.03795 1.03723 1.22127 0.95756 0.97991 0.82910 0.86966 1.86397 1.79695 1.34347 1.17589 1.19926 0.90930 0.87396 0.87112 1.21121 1.06079 1.02352 0.91396 1.21431 0.94042 0.93449 0.97664 1.21984 1.05445 0.96233 0.99988 1.22430 0.92586 0.99193 0.87353 1.67267 1.21961 1.04768 1.32693 1.20140 0.80861 0.85000 0.84279 1.90737 1.37050 1.25508 1.86474 1.46175 1.53445 1.31981 1.05130 1.20994 0.98407 0.92295 0.82176 0.89921 1.22455 0.99680 0.97231 0.99110 1.20898 0.98210 0.91560 0.86960 1.44368 1.59443 1.18779 1.09994 1.18895 1.05078 1.32859 0.81577 0.89630 1.25266 0.97571 0.99393 0.95229 1.69831 1.35281 1.46761 1.03171 0.87030 0.88218 0.77824 0.76130 1.21624 1.23176 1.19497 1.21401 0.93228 0.89129 0.94896 1.21358 0.97023 0.94800 0.95936 1.21842 0.99236 0.97854 1.00893 1.21771 0.95746 1.01588 0.99603 0.90254 0.90931 0.91089 0.83906 0.84122 0.84559 0.82341 0.76693 0.91268 0.92247 0.91549 0.95740 0.92810 0.90426 0.95591 0.93113 0.92398 0.92953 0.90495 0.92573 0.94669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 9.43 37.16 0.35 -1.18 16 2 C 0.07 0.85 2.91 -27.88 -0.08 0.77 16 3 H 0.11 1.22 6.99 -51.93 -0.36 0.86 16 4 O -0.27 -3.68 9.29 -38.64 -0.36 -4.04 16 5 C 0.33 3.72 7.45 -17.12 -0.13 3.59 16 6 C -0.19 -1.74 10.04 -39.27 -0.39 -2.13 16 7 C -0.04 -0.27 10.17 -39.31 -0.40 -0.67 16 8 C -0.22 -1.32 10.11 -39.43 -0.40 -1.72 16 9 C 0.14 1.04 11.18 -17.56 -0.20 0.85 16 10 N -0.54 -5.59 8.65 -13.33 -0.12 -5.70 16 11 C 0.51 7.44 7.20 -10.98 -0.08 7.36 16 12 O -0.52 -9.81 16.16 -14.36 -0.23 -10.04 16 13 N -0.71 -9.39 4.18 -53.76 -0.22 -9.61 16 14 C 0.16 2.65 1.57 -67.89 -0.11 2.54 16 15 H 0.08 1.51 7.58 -51.93 -0.39 1.11 16 16 C -0.14 -2.45 5.31 -26.61 -0.14 -2.59 16 17 C 0.15 2.98 6.52 -3.71 -0.02 2.96 16 18 N -0.60 -13.86 2.20 -172.33 -0.38 -14.24 16 19 C -0.26 -6.93 10.03 -15.06 -0.15 -7.08 16 20 H 0.09 2.48 8.06 -52.49 -0.42 2.06 16 21 C 0.02 0.69 5.23 -17.43 -0.09 0.60 16 22 N -0.91 -27.35 13.97 55.49 0.78 -26.57 16 23 Si 0.88 22.17 24.35 -169.99 -4.14 18.03 16 24 H -0.29 -6.98 6.62 56.52 0.37 -6.61 16 25 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 26 H -0.27 -6.78 6.64 56.52 0.38 -6.41 16 27 C 0.14 2.96 2.89 -3.72 -0.01 2.95 16 28 C -0.09 -1.47 0.56 -154.41 -0.09 -1.56 16 29 C -0.14 -2.01 8.31 37.16 0.31 -1.70 16 30 C -0.13 -2.07 7.83 37.15 0.29 -1.77 16 31 H 0.08 0.61 7.56 -51.93 -0.39 0.21 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 35 H 0.14 0.53 8.06 -52.49 -0.42 0.10 16 36 H 0.14 0.46 8.06 -52.48 -0.42 0.04 16 37 H 0.16 0.72 8.06 -52.48 -0.42 0.30 16 38 H 0.40 4.24 6.08 -40.82 -0.25 4.00 16 39 H 0.07 1.16 6.34 -51.93 -0.33 0.83 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.07 1.31 7.93 -51.93 -0.41 0.90 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.08 1.80 4.50 -51.93 -0.23 1.57 16 45 H 0.03 0.57 7.07 -51.93 -0.37 0.20 16 46 H 0.05 0.61 7.36 -51.93 -0.38 0.23 16 47 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 49 H 0.08 1.40 5.97 -51.93 -0.31 1.09 16 50 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 51 H 0.03 0.43 6.58 -51.93 -0.34 0.09 16 LS Contribution 395.44 15.07 5.96 5.96 Total: -1.00 -33.44 395.44 -8.09 -41.53 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -8.04 Total: 3.48 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -1.34 Total: 1.20 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: 0.06 Total: -56.13 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -0.59 Total: -14.08 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.14 Total: 18.03 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.44 -8.09 -41.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328098306.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.425 kcal (2) G-P(sol) polarization free energy of solvation -33.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds