Wall clock time and date at job start Wed Apr 1 2020 05:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47145 * 2 1 4 4 O 1.42897 * 109.47306 * 239.99536 * 2 1 3 5 5 C 1.35675 * 116.99652 * 89.99941 * 4 2 1 6 6 C 1.38927 * 119.68362 * 179.97438 * 5 4 2 7 7 C 1.38378 * 119.10813 * 179.97438 * 6 5 4 8 8 C 1.38826 * 118.49035 * 0.02562 * 7 6 5 9 9 C 1.38045 * 119.28926 * 0.02562 * 8 7 6 10 10 N 1.31969 * 120.83038 * 359.74237 * 9 8 7 11 11 C 1.50703 * 109.46940 * 119.99662 * 2 1 3 12 12 O 1.21282 * 119.99812 * 120.00301 * 11 2 1 13 13 N 1.34778 * 120.00048 * 300.00078 * 11 2 1 14 14 C 1.46501 * 120.00001 * 180.02562 * 13 11 2 15 15 H 1.08998 * 109.46034 * 34.99595 * 14 13 11 16 16 C 1.53045 * 109.45574 * 275.03024 * 14 13 11 17 17 C 1.53189 * 109.31144 * 178.62927 * 16 14 13 18 18 N 1.46929 * 108.77629 * 54.62916 * 17 16 14 19 19 C 1.36948 * 120.62761 * 126.36977 * 18 17 16 20 20 H 1.07996 * 120.00257 * 332.59328 * 19 18 17 21 21 C 1.38809 * 119.99563 * 152.58947 * 19 18 17 22 22 N 1.31618 * 119.99793 * 159.30782 * 21 19 18 23 23 Si 1.86799 * 120.00210 * 339.31134 * 21 19 18 24 24 H 1.48502 * 109.47406 * 92.94656 * 23 21 19 25 25 H 1.48504 * 109.47139 * 212.94797 * 23 21 19 26 26 H 1.48494 * 109.47265 * 332.94524 * 23 21 19 27 27 C 1.46923 * 118.74214 * 306.39211 * 18 17 16 28 28 C 1.53035 * 109.46140 * 154.97605 * 14 13 11 29 29 C 1.53001 * 109.49382 * 301.31940 * 28 14 13 30 30 C 1.52992 * 109.49997 * 61.41697 * 28 14 13 31 31 H 1.08994 * 109.47219 * 299.99995 * 1 2 3 32 32 H 1.08995 * 109.47112 * 60.00495 * 1 2 3 33 33 H 1.09007 * 109.46647 * 180.02562 * 1 2 3 34 34 H 1.07996 * 120.44334 * 359.96198 * 6 5 4 35 35 H 1.08002 * 120.75258 * 179.97438 * 7 6 5 36 36 H 1.08005 * 120.35775 * 179.97438 * 8 7 6 37 37 H 1.08004 * 119.58406 * 179.97438 * 9 8 7 38 38 H 0.96998 * 119.99976 * 359.97438 * 13 11 2 39 39 H 1.09005 * 109.49412 * 298.57535 * 16 14 13 40 40 H 1.08994 * 109.50071 * 58.67340 * 16 14 13 41 41 H 1.09002 * 109.59085 * 174.41605 * 17 16 14 42 42 H 1.08997 * 109.58638 * 294.70130 * 17 16 14 43 43 H 0.96999 * 120.00155 * 180.02562 * 22 21 19 44 44 H 1.09000 * 109.58796 * 173.39731 * 27 18 17 45 45 H 1.09005 * 109.58648 * 293.68048 * 27 18 17 46 46 H 1.08997 * 109.47354 * 59.99808 * 29 28 14 47 47 H 1.09004 * 109.47055 * 180.02562 * 29 28 14 48 48 H 1.09008 * 109.47212 * 300.00147 * 29 28 14 49 49 H 1.08994 * 109.47454 * 60.00182 * 30 28 14 50 50 H 1.09007 * 109.47181 * 180.02562 * 30 28 14 51 51 H 1.08999 * 109.46968 * 299.99634 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.2117 0.0828 -2.2741 6 6 2.6748 -0.5150 -3.4395 7 6 2.8795 0.2678 -4.5621 8 6 2.6130 1.6277 -4.4787 9 6 2.1557 2.1545 -3.2875 10 7 1.9657 1.3816 -2.2349 11 6 2.0323 -0.7104 1.2305 12 8 2.7296 -1.6964 1.1193 13 7 1.7066 -0.2498 2.4546 14 6 2.1954 -0.9401 3.6509 15 1 3.1947 -1.3318 3.4612 16 6 1.2518 -2.0950 3.9943 17 6 1.7843 -2.8354 5.2251 18 7 1.9745 -1.8672 6.3138 19 6 1.4011 -2.0747 7.5401 20 1 0.4930 -2.6536 7.6206 21 6 1.9874 -1.5410 8.6795 22 7 1.2719 -1.3755 9.7718 23 14 3.7916 -1.0575 8.6627 24 1 3.9162 0.3780 8.3037 25 1 4.3773 -1.2839 10.0085 26 1 4.5159 -1.8825 7.6627 27 6 2.7911 -0.6721 6.0619 28 6 2.2471 0.0438 4.8219 29 6 3.1652 1.2146 4.4649 30 6 0.8392 0.5678 5.1112 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3633 -1.0278 0.0005 34 1 2.8725 -1.5763 -3.4688 35 1 3.2393 -0.1691 -5.4819 36 1 2.7626 2.2668 -5.3364 37 1 1.9472 3.2119 -3.2173 38 1 1.1493 0.5390 2.5436 39 1 0.2580 -1.7014 4.2083 40 1 1.1972 -2.7833 3.1510 41 1 1.0664 -3.5955 5.5334 42 1 2.7361 -3.3084 4.9835 43 1 1.6814 -1.0022 10.5679 44 1 2.7375 -0.0049 6.9221 45 1 3.8268 -0.9664 5.8917 46 1 2.7796 1.7223 3.5808 47 1 3.2021 1.9149 5.2994 48 1 4.1684 0.8404 4.2604 49 1 0.1862 -0.2666 5.3667 50 1 0.8766 1.2689 5.9450 51 1 0.4516 1.0751 4.2276 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328098306.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:42 Heat of formation + Delta-G solvation = -31.438385 kcal Electronic energy + Delta-G solvation = -31647.765226 eV Core-core repulsion = 27547.555176 eV Total energy + Delta-G solvation = -4100.210051 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.93228 -41.30139 -39.96257 -38.62344 -36.41413 -34.62254 -33.98405 -33.46368 -33.14854 -31.64580 -30.83272 -28.22134 -27.77195 -27.06533 -25.79314 -24.68647 -24.30081 -23.51766 -22.20769 -21.42014 -20.15693 -19.56465 -19.13308 -18.24772 -17.57741 -17.19581 -16.95507 -16.70493 -16.66665 -16.12048 -16.08701 -15.51182 -15.43068 -15.25987 -15.17935 -14.85187 -14.53212 -14.41617 -14.25836 -14.13459 -13.97179 -13.74050 -13.39251 -13.22257 -13.03524 -12.93771 -12.85103 -12.76561 -12.65395 -12.42293 -12.31415 -12.19125 -12.07987 -11.84546 -11.56665 -11.46250 -11.21181 -10.94750 -10.86790 -10.64638 -10.57668 -10.08646 -9.48702 -8.93947 -8.15391 -5.46514 0.21336 0.33318 1.27080 1.40564 1.42874 1.48290 1.52974 2.40679 2.45364 2.83827 3.05288 3.28944 3.30947 3.52561 3.61863 3.83928 3.88352 3.92906 3.99338 4.06617 4.13076 4.24315 4.26083 4.28574 4.37963 4.45923 4.55124 4.64652 4.67030 4.68856 4.74089 4.81536 4.81904 4.84468 4.92706 4.99893 5.03303 5.06918 5.08830 5.10008 5.18562 5.30474 5.30522 5.33483 5.43200 5.54513 5.63739 5.87866 6.13910 6.18409 6.47274 6.86361 6.90869 7.13598 7.62036 8.03181 9.04266 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.026085 B = 0.002336 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.176387 B =11981.611676 C =12157.278035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.080 3.920 3 H 0.124 0.876 4 O -0.304 6.304 5 C 0.293 3.707 6 C -0.207 4.207 7 C -0.038 4.038 8 C -0.205 4.205 9 C 0.127 3.873 10 N -0.558 5.558 11 C 0.514 3.486 12 O -0.569 6.569 13 N -0.698 5.698 14 C 0.175 3.825 15 H 0.063 0.937 16 C -0.132 4.132 17 C 0.146 3.854 18 N -0.612 5.612 19 C -0.238 4.238 20 H 0.056 0.944 21 C -0.029 4.029 22 N -0.953 5.953 23 Si 0.935 3.065 24 H -0.271 1.271 25 H -0.313 1.313 26 H -0.269 1.269 27 C 0.134 3.866 28 C -0.080 4.080 29 C -0.138 4.138 30 C -0.126 4.126 31 H 0.101 0.899 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.141 0.859 35 H 0.171 0.829 36 H 0.171 0.829 37 H 0.187 0.813 38 H 0.414 0.586 39 H 0.075 0.925 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.024 0.976 43 H 0.261 0.739 44 H 0.058 0.942 45 H 0.022 0.978 46 H 0.080 0.920 47 H 0.060 0.940 48 H 0.049 0.951 49 H 0.051 0.949 50 H 0.045 0.955 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.229 11.416 -31.040 33.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.020 3.980 3 H 0.141 0.859 4 O -0.211 6.211 5 C 0.116 3.884 6 C -0.228 4.228 7 C -0.063 4.063 8 C -0.225 4.225 9 C -0.028 4.028 10 N -0.282 5.282 11 C 0.300 3.700 12 O -0.448 6.448 13 N -0.351 5.351 14 C 0.070 3.930 15 H 0.082 0.918 16 C -0.172 4.172 17 C 0.021 3.979 18 N -0.336 5.336 19 C -0.368 4.368 20 H 0.074 0.926 21 C -0.224 4.224 22 N -0.599 5.599 23 Si 0.764 3.236 24 H -0.197 1.197 25 H -0.242 1.242 26 H -0.194 1.194 27 C 0.009 3.991 28 C -0.082 4.082 29 C -0.195 4.195 30 C -0.183 4.183 31 H 0.119 0.881 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.159 0.841 35 H 0.189 0.811 36 H 0.188 0.812 37 H 0.204 0.796 38 H 0.252 0.748 39 H 0.093 0.907 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.042 0.958 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.040 0.960 46 H 0.099 0.901 47 H 0.079 0.921 48 H 0.068 0.932 49 H 0.070 0.930 50 H 0.064 0.936 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.443 10.805 -30.136 32.017 hybrid contribution 0.913 -0.231 0.382 1.016 sum 1.356 10.574 -29.753 31.606 Atomic orbital electron populations 1.22147 0.90568 1.03539 1.05105 1.22094 0.96918 0.97571 0.81416 0.85870 1.86347 1.80572 1.35696 1.18447 1.20162 0.93046 0.88143 0.87089 1.21345 1.06725 1.02821 0.91875 1.21848 0.92932 0.93715 0.97788 1.22410 1.03228 0.96315 1.00509 1.23041 0.92212 1.00284 0.87244 1.67225 1.22501 1.04421 1.34086 1.20688 0.79784 0.84323 0.85160 1.90718 1.39181 1.27732 1.87132 1.45885 1.53202 1.32078 1.03966 1.20651 0.97256 0.92001 0.83071 0.91849 1.22274 0.99952 0.97445 0.97493 1.21002 0.98225 0.91435 0.87267 1.44434 1.59465 1.20420 1.09294 1.18808 1.03773 1.30904 0.83318 0.92631 1.25785 1.00841 1.00697 0.95065 1.69943 1.36728 1.49265 1.03960 0.86096 0.83595 0.78536 0.75344 1.19714 1.24170 1.19427 1.21438 0.92937 0.88346 0.96422 1.21195 0.97924 0.95307 0.93821 1.21833 0.98597 0.96816 1.02296 1.21723 0.94712 1.00670 1.01194 0.88059 0.90284 0.92146 0.84105 0.81119 0.81196 0.79571 0.74759 0.90675 0.91909 0.92043 0.95788 0.93019 0.92389 0.95994 0.90134 0.92127 0.93169 0.93038 0.93591 0.90415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 9.43 71.98 0.68 -1.93 16 2 C 0.08 1.76 2.91 29.85 0.09 1.85 16 3 H 0.12 2.42 6.99 -2.39 -0.02 2.40 16 4 O -0.30 -8.08 9.29 -70.89 -0.66 -8.74 16 5 C 0.29 6.48 7.45 84.80 0.63 7.11 16 6 C -0.21 -3.63 10.04 22.47 0.23 -3.41 16 7 C -0.04 -0.40 10.17 22.44 0.23 -0.17 16 8 C -0.20 -1.76 10.11 22.36 0.23 -1.53 16 9 C 0.13 1.51 11.18 84.63 0.95 2.46 16 10 N -0.56 -10.43 8.65 -308.95 -2.67 -13.11 16 11 C 0.51 14.26 7.20 87.66 0.63 14.89 16 12 O -0.57 -21.35 16.16 16.00 0.26 -21.09 16 13 N -0.70 -16.67 4.18 -442.40 -1.85 -18.52 16 14 C 0.17 5.37 1.57 45.02 0.07 5.44 16 15 H 0.06 2.26 7.58 -2.39 -0.02 2.24 16 16 C -0.13 -4.37 5.31 30.67 0.16 -4.21 16 17 C 0.15 5.86 6.52 86.36 0.56 6.43 16 18 N -0.61 -28.44 2.20 -699.14 -1.54 -29.98 16 19 C -0.24 -13.28 10.03 84.03 0.84 -12.44 16 20 H 0.06 3.38 8.06 -2.91 -0.02 3.35 16 21 C -0.03 -1.68 5.23 84.86 0.44 -1.23 16 22 N -0.95 -59.17 13.97 21.65 0.30 -58.87 16 23 Si 0.93 46.65 24.35 68.60 1.67 48.32 16 24 H -0.27 -12.58 6.62 99.48 0.66 -11.93 16 25 H -0.31 -15.97 7.11 99.48 0.71 -15.26 16 26 H -0.27 -13.24 6.64 99.48 0.66 -12.58 16 27 C 0.13 5.60 2.89 86.36 0.25 5.84 16 28 C -0.08 -2.52 0.56 -52.12 -0.03 -2.55 16 29 C -0.14 -3.53 8.31 71.98 0.60 -2.94 16 30 C -0.13 -3.73 7.83 71.98 0.56 -3.17 16 31 H 0.10 1.20 7.56 -2.39 -0.02 1.18 16 32 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 34 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 35 H 0.17 0.67 8.06 -2.91 -0.02 0.65 16 36 H 0.17 0.29 8.06 -2.91 -0.02 0.27 16 37 H 0.19 0.99 8.06 -2.91 -0.02 0.97 16 38 H 0.41 7.23 6.08 -92.71 -0.56 6.66 16 39 H 0.07 2.42 6.34 -2.38 -0.02 2.41 16 40 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.06 2.48 7.93 -2.39 -0.02 2.46 16 42 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.26 15.47 8.31 -92.71 -0.77 14.69 16 44 H 0.06 2.66 4.50 -2.39 -0.01 2.65 16 45 H 0.02 0.94 7.07 -2.38 -0.02 0.92 16 46 H 0.08 1.59 7.36 -2.39 -0.02 1.58 16 47 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 48 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 49 H 0.05 1.80 5.97 -2.39 -0.01 1.79 16 50 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 51 H 0.08 1.61 6.58 -2.39 -0.02 1.60 16 Total: -1.00 -76.43 395.44 2.90 -73.52 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 0.28 Total: 18.00 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: 7.12 Total: 10.46 kcal Atomic # 7 Polarization: -114.71 SS G_CDS: -5.76 Total: -120.47 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: -0.40 Total: -29.83 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 1.67 Total: 48.32 kcal Total: -76.43 2.90 -73.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328098306.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.084 kcal (2) G-P(sol) polarization free energy of solvation -76.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds