Wall clock time and date at job start Wed Apr 1 2020 04:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46955 * 2 1 4 4 O 1.42894 * 109.47411 * 239.99911 * 2 1 3 5 5 C 1.42900 * 113.99982 * 89.99717 * 4 2 1 6 6 C 1.50695 * 109.47386 * 180.02562 * 5 4 2 7 7 C 1.38651 * 120.79280 * 269.71805 * 6 5 4 8 8 C 1.38207 * 119.16382 * 179.79459 * 7 6 5 9 9 N 1.31871 * 120.76123 * 0.49466 * 8 7 6 10 10 C 1.31867 * 121.72891 * 359.74060 * 9 8 7 11 11 C 1.38203 * 120.76190 * 0.02562 * 10 9 8 12 12 C 1.50702 * 109.47157 * 119.99927 * 2 1 3 13 13 O 1.21287 * 119.99841 * 104.92752 * 12 2 1 14 14 N 1.34773 * 120.00215 * 284.93187 * 12 2 1 15 15 C 1.46932 * 120.63048 * 5.79122 * 14 12 2 16 16 C 1.53184 * 108.77524 * 126.37333 * 15 14 12 17 17 C 1.53042 * 109.31603 * 54.63605 * 16 15 14 18 18 C 1.53042 * 109.53685 * 298.63415 * 17 16 15 19 19 C 1.46930 * 120.63182 * 185.77158 * 14 12 2 20 20 H 1.09000 * 109.58492 * 113.84063 * 19 14 12 21 21 C 1.52996 * 109.58608 * 353.41312 * 19 14 12 22 22 N 1.46503 * 109.46991 * 69.08135 * 21 19 14 23 23 C 1.36943 * 119.99963 * 174.84271 * 22 21 19 24 24 H 1.08004 * 119.99913 * 359.97438 * 23 22 21 25 25 C 1.38811 * 119.99947 * 180.02562 * 23 22 21 26 26 N 1.31617 * 119.99997 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 119.99809 * 179.97438 * 25 23 22 28 28 H 1.48507 * 109.47140 * 89.99714 * 27 25 23 29 29 H 1.48503 * 109.47191 * 209.99251 * 27 25 23 30 30 H 1.48498 * 109.47220 * 329.99681 * 27 25 23 31 31 H 1.09002 * 109.47308 * 297.78003 * 1 2 3 32 32 H 1.08998 * 109.47321 * 57.78082 * 1 2 3 33 33 H 1.09003 * 109.46756 * 177.78132 * 1 2 3 34 34 H 1.09000 * 109.47105 * 300.00757 * 5 4 2 35 35 H 1.09007 * 109.46912 * 60.00421 * 5 4 2 36 36 H 1.08000 * 120.41550 * 0.02562 * 7 6 5 37 37 H 1.07996 * 119.61541 * 180.20907 * 8 7 6 38 38 H 1.07995 * 119.61986 * 179.97438 * 10 9 8 39 39 H 1.08008 * 120.41808 * 179.97438 * 11 10 9 40 40 H 1.08997 * 109.58327 * 6.58356 * 15 14 12 41 41 H 1.09003 * 109.58312 * 246.16342 * 15 14 12 42 42 H 1.09000 * 109.49828 * 174.58822 * 16 15 14 43 43 H 1.09005 * 109.50095 * 294.68413 * 16 15 14 44 44 H 1.08992 * 109.45924 * 58.65401 * 17 16 15 45 45 H 1.08996 * 109.46107 * 178.63134 * 17 16 15 46 46 H 1.09001 * 109.49919 * 181.31875 * 18 17 16 47 47 H 1.09004 * 109.49973 * 301.38321 * 18 17 16 48 48 H 1.09001 * 109.47471 * 189.08159 * 21 19 14 49 49 H 1.09007 * 109.47115 * 309.08327 * 21 19 14 50 50 H 0.97005 * 120.00057 * 354.83675 * 22 21 19 51 51 H 0.97000 * 120.00281 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.2001 0.1829 -2.2940 6 6 2.7003 -0.6283 -3.4613 7 6 4.0591 -0.8074 -3.6708 8 6 4.4806 -1.5614 -4.7497 9 7 3.6076 -2.0987 -5.5793 10 6 2.3083 -1.9453 -5.4137 11 6 1.8128 -1.2084 -4.3548 12 6 2.0323 -0.7104 1.2305 13 8 2.4896 -1.8301 1.1400 14 7 1.9734 -0.1015 2.4314 15 6 1.3086 1.2004 2.5788 16 6 0.2622 1.0964 3.6928 17 6 0.9319 0.5844 4.9701 18 6 1.5118 -0.8097 4.7205 19 6 2.5725 -0.7273 3.6182 20 1 3.4127 -0.1252 3.9639 21 6 3.0569 -2.1352 3.2663 22 7 4.2057 -2.0445 2.3617 23 6 4.8778 -3.1791 1.9924 24 1 4.5611 -4.1408 2.3684 25 6 5.9666 -3.0930 1.1358 26 7 6.3528 -1.9210 0.6780 27 14 6.8837 -4.6406 0.6326 28 1 6.2731 -5.1991 -0.6005 29 1 8.3081 -4.3098 0.3735 30 1 6.7991 -5.6433 1.7247 31 1 -0.3634 0.4790 0.9092 32 1 -0.3634 0.5479 -0.8694 33 1 -0.3633 -1.0269 -0.0398 34 1 1.2538 0.6547 -2.5587 35 1 2.9320 0.9514 -2.0449 36 1 4.7791 -0.3664 -2.9973 37 1 5.5372 -1.7085 -4.9179 38 1 1.6237 -2.4001 -6.1142 39 1 0.7476 -1.0860 -4.2247 40 1 0.8200 1.4692 1.6424 41 1 2.0459 1.9597 2.8397 42 1 -0.1710 2.0793 3.8780 43 1 -0.5230 0.4033 3.3908 44 1 1.7332 1.2649 5.2578 45 1 0.1944 0.5325 5.7710 46 1 1.9681 -1.1834 5.6372 47 1 0.7148 -1.4850 4.4093 48 1 3.3519 -2.6563 4.1771 49 1 2.2523 -2.6848 2.7777 50 1 4.4903 -1.1807 2.0243 51 1 7.1134 -1.8608 0.0791 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328644216.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:57 Heat of formation + Delta-G solvation = 14.007657 kcal Electronic energy + Delta-G solvation = -32353.631170 eV Core-core repulsion = 28255.391808 eV Total energy + Delta-G solvation = -4098.239362 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.32569 -39.97595 -37.98251 -36.58643 -34.56306 -33.29197 -32.67966 -31.98400 -31.08031 -30.50408 -29.74851 -26.81292 -26.24238 -24.48429 -23.68907 -23.33586 -22.63537 -21.90090 -21.28675 -20.53008 -18.71713 -17.41685 -16.78679 -16.56456 -16.35335 -16.13209 -15.47318 -15.30296 -15.06273 -14.68950 -14.47026 -14.37960 -14.21947 -13.71153 -13.57232 -13.51698 -13.49390 -13.16929 -12.92369 -12.79513 -12.52631 -12.21269 -12.13179 -11.95707 -11.77074 -11.65870 -11.40373 -11.10050 -11.01420 -10.90277 -10.69906 -10.64602 -10.54612 -10.27581 -9.82024 -9.65935 -9.60008 -9.44930 -9.38377 -9.00719 -8.66338 -8.14669 -8.02215 -6.45327 -5.49417 -2.68816 1.23974 1.28994 3.13833 3.37106 3.59812 3.64490 3.65136 3.80932 4.20406 4.57429 4.64778 4.74245 4.76608 4.79776 4.85238 4.89984 4.98072 5.02894 5.12605 5.17949 5.20844 5.25837 5.36616 5.38587 5.44382 5.45547 5.55535 5.60999 5.69125 5.74555 5.78325 5.81786 5.87098 5.91876 5.96254 6.01664 6.05903 6.07612 6.13406 6.17312 6.36957 6.44198 6.58223 6.69943 6.81201 6.95305 7.22209 7.34821 7.93382 7.98024 8.06914 8.68656 9.01821 9.80402 10.39606 10.74054 11.74625 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007917 B = 0.004670 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3535.815191 B = 5994.187144 C = 8988.883179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.075 3.925 3 H 0.072 0.928 4 O -0.339 6.339 5 C 0.101 3.899 6 C -0.041 4.041 7 C -0.137 4.137 8 C 0.097 3.903 9 N -0.485 5.485 10 C 0.088 3.912 11 C -0.154 4.154 12 C 0.473 3.527 13 O -0.418 6.418 14 N -0.616 5.616 15 C 0.104 3.896 16 C -0.134 4.134 17 C -0.117 4.117 18 C -0.127 4.127 19 C 0.145 3.855 20 H 0.068 0.932 21 C 0.159 3.841 22 N -0.696 5.696 23 C -0.206 4.206 24 H 0.063 0.937 25 C -0.019 4.019 26 N -0.937 5.937 27 Si 0.898 3.102 28 H -0.294 1.294 29 H -0.295 1.295 30 H -0.285 1.285 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.141 0.859 37 H 0.157 0.843 38 H 0.154 0.846 39 H 0.132 0.868 40 H 0.081 0.919 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.061 0.939 46 H 0.072 0.928 47 H 0.065 0.935 48 H 0.014 0.986 49 H 0.040 0.960 50 H 0.379 0.621 51 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.534 12.304 -1.218 19.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.014 3.986 3 H 0.090 0.910 4 O -0.256 6.256 5 C 0.025 3.975 6 C -0.050 4.050 7 C -0.157 4.157 8 C -0.060 4.060 9 N -0.194 5.194 10 C -0.068 4.068 11 C -0.174 4.174 12 C 0.256 3.744 13 O -0.283 6.283 14 N -0.356 5.356 15 C -0.019 4.019 16 C -0.172 4.172 17 C -0.155 4.155 18 C -0.166 4.166 19 C 0.042 3.958 20 H 0.086 0.914 21 C 0.032 3.968 22 N -0.339 5.339 23 C -0.338 4.338 24 H 0.081 0.919 25 C -0.213 4.213 26 N -0.588 5.588 27 Si 0.731 3.269 28 H -0.221 1.221 29 H -0.222 1.222 30 H -0.211 1.211 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.159 0.841 37 H 0.174 0.826 38 H 0.171 0.829 39 H 0.150 0.850 40 H 0.100 0.900 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.091 0.909 47 H 0.084 0.916 48 H 0.031 0.969 49 H 0.058 0.942 50 H 0.212 0.788 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -14.859 10.741 -2.027 18.446 hybrid contribution 0.241 0.366 0.298 0.529 sum -14.618 11.107 -1.729 18.440 Atomic orbital electron populations 1.22338 0.94565 1.03708 1.02378 1.21910 0.94153 0.95956 0.86618 0.90980 1.88214 1.86463 1.32801 1.18161 1.21342 0.99339 0.91830 0.85030 1.19943 0.93681 0.96820 0.94509 1.22210 0.96095 0.99043 0.98369 1.22773 0.99678 0.92931 0.90601 1.67636 1.03317 1.19500 1.28972 1.22676 0.92040 0.95839 0.96288 1.22001 1.00643 0.98743 0.96041 1.20066 0.82341 0.88622 0.83353 1.91140 1.36545 1.16595 1.84052 1.47786 1.59134 1.20773 1.07942 1.21738 0.94998 0.85959 0.99253 1.21916 0.98190 1.01311 0.95804 1.21487 0.99947 0.97068 0.96971 1.21914 0.99015 0.96938 0.98773 1.21475 0.93858 0.96337 0.84138 0.91439 1.20911 0.92009 0.91415 0.92477 1.42233 1.30924 1.06988 1.53774 1.19120 1.06203 0.87331 1.21108 0.91872 1.24552 0.99680 0.96168 1.00904 1.69651 1.29110 1.21795 1.38198 0.86292 0.79001 0.83161 0.78458 1.22146 1.22163 1.21142 0.90841 0.91948 0.91106 0.92440 0.91942 0.84084 0.82559 0.82915 0.84973 0.90034 0.91946 0.91246 0.91613 0.91873 0.92061 0.90936 0.91585 0.96861 0.94210 0.78783 0.94249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.95 9.12 37.16 0.34 -1.61 16 2 C 0.08 1.14 2.28 -27.88 -0.06 1.07 16 3 H 0.07 0.92 7.04 -51.93 -0.37 0.56 16 4 O -0.34 -6.14 9.55 -54.68 -0.52 -6.66 16 5 C 0.10 1.41 5.92 36.00 0.21 1.62 16 6 C -0.04 -0.62 5.55 -104.32 -0.58 -1.20 16 7 C -0.14 -2.19 9.82 -39.44 -0.39 -2.58 16 8 C 0.10 1.50 11.18 -17.55 -0.20 1.30 16 9 N -0.48 -7.61 10.36 -13.26 -0.14 -7.75 16 10 C 0.09 1.19 11.18 -17.55 -0.20 0.99 16 11 C -0.15 -2.04 9.82 -39.44 -0.39 -2.42 16 12 C 0.47 8.96 6.39 -10.99 -0.07 8.89 16 13 O -0.42 -10.38 10.35 -13.89 -0.14 -10.53 16 14 N -0.62 -9.61 2.97 -165.22 -0.49 -10.10 16 15 C 0.10 1.12 5.64 -3.71 -0.02 1.10 16 16 C -0.13 -1.20 6.08 -26.61 -0.16 -1.36 16 17 C -0.12 -1.15 5.88 -26.69 -0.16 -1.30 16 18 C -0.13 -1.62 5.36 -26.61 -0.14 -1.76 16 19 C 0.14 2.43 2.93 -67.60 -0.20 2.23 16 20 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 21 C 0.16 3.50 4.87 -4.04 -0.02 3.48 16 22 N -0.70 -18.90 3.22 -59.90 -0.19 -19.09 16 23 C -0.21 -6.23 9.71 -15.06 -0.15 -6.37 16 24 H 0.06 1.90 7.83 -52.48 -0.41 1.49 16 25 C -0.02 -0.57 5.50 -17.43 -0.10 -0.67 16 26 N -0.94 -29.67 13.06 55.49 0.72 -28.94 16 27 Si 0.90 24.32 29.55 -169.99 -5.02 19.29 16 28 H -0.29 -8.09 7.11 56.52 0.40 -7.68 16 29 H -0.29 -7.92 7.11 56.52 0.40 -7.52 16 30 H -0.29 -7.51 7.11 56.52 0.40 -7.10 16 31 H 0.07 0.68 5.92 -51.93 -0.31 0.38 16 32 H 0.06 0.56 7.92 -51.93 -0.41 0.15 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.06 0.61 7.88 -51.93 -0.41 0.20 16 35 H 0.06 0.82 8.04 -51.92 -0.42 0.40 16 36 H 0.14 2.27 8.06 -52.49 -0.42 1.84 16 37 H 0.16 2.09 8.06 -52.49 -0.42 1.66 16 38 H 0.15 1.55 8.06 -52.49 -0.42 1.12 16 39 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 40 H 0.08 0.74 4.30 -51.93 -0.22 0.52 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.01 0.30 8.13 -51.93 -0.42 -0.12 16 49 H 0.04 0.96 6.34 -51.93 -0.33 0.63 16 50 H 0.38 10.88 7.03 -40.82 -0.29 10.59 16 51 H 0.25 7.61 8.31 -40.82 -0.34 7.28 16 LS Contribution 401.87 15.07 6.06 6.06 Total: -1.00 -37.88 401.87 -10.21 -48.09 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -8.21 Total: 8.23 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -2.27 Total: 1.41 kcal Atomic # 7 Polarization: -65.79 SS G_CDS: -0.10 Total: -65.88 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.67 Total: -17.19 kcal Atomic # 14 Polarization: 24.32 SS G_CDS: -5.02 Total: 19.29 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -37.88 -10.21 -48.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328644216.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.099 kcal (2) G-P(sol) polarization free energy of solvation -37.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds