Wall clock time and date at job start Wed Apr 1 2020 04:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46955 * 2 1 4 4 O 1.42894 * 109.47411 * 239.99911 * 2 1 3 5 5 C 1.42900 * 113.99982 * 89.99717 * 4 2 1 6 6 C 1.50695 * 109.47386 * 180.02562 * 5 4 2 7 7 C 1.38651 * 120.79280 * 269.71805 * 6 5 4 8 8 C 1.38207 * 119.16382 * 179.79459 * 7 6 5 9 9 N 1.31871 * 120.76123 * 0.49466 * 8 7 6 10 10 C 1.31867 * 121.72891 * 359.74060 * 9 8 7 11 11 C 1.38203 * 120.76190 * 0.02562 * 10 9 8 12 12 C 1.50702 * 109.47157 * 119.99927 * 2 1 3 13 13 O 1.21287 * 119.99841 * 104.92752 * 12 2 1 14 14 N 1.34773 * 120.00215 * 284.93187 * 12 2 1 15 15 C 1.46932 * 120.63048 * 5.79122 * 14 12 2 16 16 C 1.53184 * 108.77524 * 126.37333 * 15 14 12 17 17 C 1.53042 * 109.31603 * 54.63605 * 16 15 14 18 18 C 1.53042 * 109.53685 * 298.63415 * 17 16 15 19 19 C 1.46930 * 120.63182 * 185.77158 * 14 12 2 20 20 H 1.09000 * 109.58492 * 113.84063 * 19 14 12 21 21 C 1.52996 * 109.58608 * 353.41312 * 19 14 12 22 22 N 1.46503 * 109.46991 * 69.08135 * 21 19 14 23 23 C 1.36943 * 119.99963 * 174.84271 * 22 21 19 24 24 H 1.08004 * 119.99913 * 359.97438 * 23 22 21 25 25 C 1.38811 * 119.99947 * 180.02562 * 23 22 21 26 26 N 1.31617 * 119.99997 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 119.99809 * 179.97438 * 25 23 22 28 28 H 1.48507 * 109.47140 * 89.99714 * 27 25 23 29 29 H 1.48503 * 109.47191 * 209.99251 * 27 25 23 30 30 H 1.48498 * 109.47220 * 329.99681 * 27 25 23 31 31 H 1.09002 * 109.47308 * 297.78003 * 1 2 3 32 32 H 1.08998 * 109.47321 * 57.78082 * 1 2 3 33 33 H 1.09003 * 109.46756 * 177.78132 * 1 2 3 34 34 H 1.09000 * 109.47105 * 300.00757 * 5 4 2 35 35 H 1.09007 * 109.46912 * 60.00421 * 5 4 2 36 36 H 1.08000 * 120.41550 * 0.02562 * 7 6 5 37 37 H 1.07996 * 119.61541 * 180.20907 * 8 7 6 38 38 H 1.07995 * 119.61986 * 179.97438 * 10 9 8 39 39 H 1.08008 * 120.41808 * 179.97438 * 11 10 9 40 40 H 1.08997 * 109.58327 * 6.58356 * 15 14 12 41 41 H 1.09003 * 109.58312 * 246.16342 * 15 14 12 42 42 H 1.09000 * 109.49828 * 174.58822 * 16 15 14 43 43 H 1.09005 * 109.50095 * 294.68413 * 16 15 14 44 44 H 1.08992 * 109.45924 * 58.65401 * 17 16 15 45 45 H 1.08996 * 109.46107 * 178.63134 * 17 16 15 46 46 H 1.09001 * 109.49919 * 181.31875 * 18 17 16 47 47 H 1.09004 * 109.49973 * 301.38321 * 18 17 16 48 48 H 1.09001 * 109.47471 * 189.08159 * 21 19 14 49 49 H 1.09007 * 109.47115 * 309.08327 * 21 19 14 50 50 H 0.97005 * 120.00057 * 354.83675 * 22 21 19 51 51 H 0.97000 * 120.00281 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.2001 0.1829 -2.2940 6 6 2.7003 -0.6283 -3.4613 7 6 4.0591 -0.8074 -3.6708 8 6 4.4806 -1.5614 -4.7497 9 7 3.6076 -2.0987 -5.5793 10 6 2.3083 -1.9453 -5.4137 11 6 1.8128 -1.2084 -4.3548 12 6 2.0323 -0.7104 1.2305 13 8 2.4896 -1.8301 1.1400 14 7 1.9734 -0.1015 2.4314 15 6 1.3086 1.2004 2.5788 16 6 0.2622 1.0964 3.6928 17 6 0.9319 0.5844 4.9701 18 6 1.5118 -0.8097 4.7205 19 6 2.5725 -0.7273 3.6182 20 1 3.4127 -0.1252 3.9639 21 6 3.0569 -2.1352 3.2663 22 7 4.2057 -2.0445 2.3617 23 6 4.8778 -3.1791 1.9924 24 1 4.5611 -4.1408 2.3684 25 6 5.9666 -3.0930 1.1358 26 7 6.3528 -1.9210 0.6780 27 14 6.8837 -4.6406 0.6326 28 1 6.2731 -5.1991 -0.6005 29 1 8.3081 -4.3098 0.3735 30 1 6.7991 -5.6433 1.7247 31 1 -0.3634 0.4790 0.9092 32 1 -0.3634 0.5479 -0.8694 33 1 -0.3633 -1.0269 -0.0398 34 1 1.2538 0.6547 -2.5587 35 1 2.9320 0.9514 -2.0449 36 1 4.7791 -0.3664 -2.9973 37 1 5.5372 -1.7085 -4.9179 38 1 1.6237 -2.4001 -6.1142 39 1 0.7476 -1.0860 -4.2247 40 1 0.8200 1.4692 1.6424 41 1 2.0459 1.9597 2.8397 42 1 -0.1710 2.0793 3.8780 43 1 -0.5230 0.4033 3.3908 44 1 1.7332 1.2649 5.2578 45 1 0.1944 0.5325 5.7710 46 1 1.9681 -1.1834 5.6372 47 1 0.7148 -1.4850 4.4093 48 1 3.3519 -2.6563 4.1771 49 1 2.2523 -2.6848 2.7777 50 1 4.4903 -1.1807 2.0243 51 1 7.1134 -1.8608 0.0791 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328644216.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:56 Heat of formation + Delta-G solvation = -11.376135 kcal Electronic energy + Delta-G solvation = -32354.731894 eV Core-core repulsion = 28255.391808 eV Total energy + Delta-G solvation = -4099.340086 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.61888 -41.11091 -39.16257 -37.87619 -36.37653 -34.61880 -33.87084 -33.58152 -32.18461 -31.82282 -31.28500 -27.95125 -27.70254 -26.04216 -24.76083 -24.44857 -24.30330 -23.04951 -22.70720 -21.57743 -20.03080 -19.13355 -18.32254 -17.75519 -17.49096 -17.37847 -16.72204 -16.57907 -16.51785 -16.19142 -15.75742 -15.51257 -15.34095 -15.23348 -15.00700 -14.81565 -14.68137 -14.50351 -14.22371 -13.95181 -13.86410 -13.59094 -13.31080 -13.14603 -13.10127 -12.90428 -12.82592 -12.68630 -12.47706 -12.19753 -12.15225 -12.02517 -11.86378 -11.69187 -11.42850 -11.30439 -10.88767 -10.82175 -10.74051 -10.52101 -10.12604 -9.65873 -9.42139 -8.61688 -7.84554 -5.02393 0.11080 0.16121 1.37946 1.42917 1.48591 1.89064 2.04665 2.58999 2.67345 3.10534 3.48320 3.51682 3.56576 3.73629 3.75223 3.85092 3.90408 3.98952 4.02427 4.08115 4.15260 4.16830 4.19660 4.34728 4.35773 4.41109 4.41969 4.50611 4.63493 4.65991 4.66154 4.75080 4.83173 4.84636 4.89373 4.96142 5.00814 5.06423 5.15153 5.15955 5.24198 5.28322 5.33155 5.35734 5.50009 5.55769 5.71807 5.84547 6.14700 6.36753 6.70629 6.94307 7.42918 7.63854 8.22685 8.45783 9.39780 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007917 B = 0.004670 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3535.815191 B = 5994.187144 C = 8988.883179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.075 3.925 3 H 0.098 0.902 4 O -0.384 6.384 5 C 0.100 3.900 6 C -0.057 4.057 7 C -0.163 4.163 8 C 0.081 3.919 9 N -0.506 5.506 10 C 0.085 3.915 11 C -0.149 4.149 12 C 0.467 3.533 13 O -0.496 6.496 14 N -0.612 5.612 15 C 0.094 3.906 16 C -0.128 4.128 17 C -0.113 4.113 18 C -0.119 4.119 19 C 0.149 3.851 20 H 0.060 0.940 21 C 0.162 3.838 22 N -0.702 5.702 23 C -0.211 4.211 24 H 0.056 0.944 25 C -0.078 4.078 26 N -0.965 5.965 27 Si 0.958 3.042 28 H -0.302 1.302 29 H -0.290 1.290 30 H -0.272 1.272 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.048 0.952 34 H 0.100 0.900 35 H 0.062 0.938 36 H 0.125 0.875 37 H 0.165 0.835 38 H 0.189 0.811 39 H 0.167 0.833 40 H 0.104 0.896 41 H 0.072 0.928 42 H 0.104 0.896 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.084 0.916 46 H 0.077 0.923 47 H 0.059 0.941 48 H 0.010 0.990 49 H 0.018 0.982 50 H 0.367 0.633 51 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.698 14.416 -0.773 23.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.015 3.985 3 H 0.116 0.884 4 O -0.303 6.303 5 C 0.024 3.976 6 C -0.066 4.066 7 C -0.183 4.183 8 C -0.075 4.075 9 N -0.216 5.216 10 C -0.072 4.072 11 C -0.168 4.168 12 C 0.252 3.748 13 O -0.367 6.367 14 N -0.350 5.350 15 C -0.027 4.027 16 C -0.166 4.166 17 C -0.151 4.151 18 C -0.158 4.158 19 C 0.046 3.954 20 H 0.078 0.922 21 C 0.036 3.964 22 N -0.342 5.342 23 C -0.344 4.344 24 H 0.074 0.926 25 C -0.269 4.269 26 N -0.618 5.618 27 Si 0.789 3.211 28 H -0.231 1.231 29 H -0.216 1.216 30 H -0.197 1.197 31 H 0.116 0.884 32 H 0.113 0.887 33 H 0.067 0.933 34 H 0.118 0.882 35 H 0.080 0.920 36 H 0.144 0.856 37 H 0.182 0.818 38 H 0.206 0.794 39 H 0.185 0.815 40 H 0.122 0.878 41 H 0.091 0.909 42 H 0.123 0.877 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.102 0.898 46 H 0.096 0.904 47 H 0.078 0.922 48 H 0.027 0.973 49 H 0.036 0.964 50 H 0.198 0.802 51 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -18.069 12.902 -1.522 22.254 hybrid contribution 1.108 -0.259 0.180 1.152 sum -16.961 12.643 -1.342 21.197 Atomic orbital electron populations 1.22290 0.91162 1.03190 1.05138 1.22059 0.96536 0.95927 0.84026 0.88420 1.88155 1.87144 1.35216 1.19797 1.21535 1.01408 0.91119 0.83508 1.20284 0.93496 0.97311 0.95474 1.22251 0.96948 1.00304 0.98818 1.22950 1.00454 0.93245 0.90815 1.67677 1.04501 1.20101 1.29320 1.23341 0.91752 0.95247 0.96861 1.22377 1.02089 0.97390 0.94970 1.21022 0.80511 0.87990 0.85237 1.91105 1.40527 1.19859 1.85241 1.47945 1.58250 1.22167 1.06661 1.22160 0.95738 0.83317 1.01531 1.21917 0.97236 1.03231 0.94172 1.21497 1.00618 0.94629 0.98321 1.21860 0.97461 0.99421 0.97076 1.21321 0.95255 0.92902 0.85959 0.92198 1.20921 0.89818 0.95021 0.90639 1.42263 1.32101 1.05391 1.54479 1.19403 1.06221 0.88126 1.20667 0.92597 1.25256 1.01007 0.99008 1.01655 1.69789 1.29564 1.23406 1.39013 0.85335 0.77739 0.80207 0.77779 1.23063 1.21610 1.19708 0.88442 0.88679 0.93305 0.88187 0.91954 0.85649 0.81755 0.79419 0.81520 0.87779 0.90934 0.87716 0.91631 0.91366 0.89754 0.90397 0.92209 0.97254 0.96419 0.80165 0.94741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.11 9.12 71.98 0.66 -2.45 16 2 C 0.08 2.18 2.28 29.85 0.07 2.25 16 3 H 0.10 2.26 7.04 -2.39 -0.02 2.24 16 4 O -0.38 -13.93 9.55 -130.39 -1.25 -15.17 16 5 C 0.10 2.67 5.92 71.23 0.42 3.09 16 6 C -0.06 -1.72 5.55 -19.67 -0.11 -1.83 16 7 C -0.16 -5.51 9.82 22.36 0.22 -5.29 16 8 C 0.08 2.63 11.18 84.68 0.95 3.58 16 9 N -0.51 -15.93 10.36 -195.85 -2.03 -17.96 16 10 C 0.08 2.16 11.18 84.68 0.95 3.11 16 11 C -0.15 -3.66 9.82 22.36 0.22 -3.44 16 12 C 0.47 17.92 6.39 87.66 0.56 18.48 16 13 O -0.50 -25.97 10.35 15.54 0.16 -25.81 16 14 N -0.61 -18.60 2.97 -795.02 -2.36 -20.96 16 15 C 0.09 1.71 5.64 86.36 0.49 2.19 16 16 C -0.13 -1.70 6.08 30.67 0.19 -1.52 16 17 C -0.11 -1.80 5.88 30.62 0.18 -1.62 16 18 C -0.12 -2.86 5.36 30.67 0.16 -2.69 16 19 C 0.15 5.02 2.93 44.97 0.13 5.15 16 20 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 21 C 0.16 7.49 4.87 86.38 0.42 7.91 16 22 N -0.70 -40.08 3.22 -343.44 -1.11 -41.19 16 23 C -0.21 -13.39 9.71 84.03 0.82 -12.58 16 24 H 0.06 3.53 7.83 -2.91 -0.02 3.51 16 25 C -0.08 -4.97 5.50 84.86 0.47 -4.51 16 26 N -0.96 -63.71 13.06 21.65 0.28 -63.43 16 27 Si 0.96 51.89 29.55 68.60 2.03 53.92 16 28 H -0.30 -16.66 7.11 99.48 0.71 -15.95 16 29 H -0.29 -15.30 7.11 99.48 0.71 -14.60 16 30 H -0.27 -13.95 7.11 99.48 0.71 -13.24 16 31 H 0.10 1.38 5.92 -2.39 -0.01 1.37 16 32 H 0.09 1.25 7.92 -2.39 -0.02 1.23 16 33 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.10 1.75 7.88 -2.39 -0.02 1.73 16 35 H 0.06 1.61 8.04 -2.38 -0.02 1.59 16 36 H 0.13 4.46 8.06 -2.91 -0.02 4.44 16 37 H 0.17 4.74 8.06 -2.91 -0.02 4.72 16 38 H 0.19 3.28 8.06 -2.91 -0.02 3.25 16 39 H 0.17 2.85 8.06 -2.91 -0.02 2.83 16 40 H 0.10 1.42 4.30 -2.39 -0.01 1.41 16 41 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 44 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 47 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 48 H 0.01 0.45 8.13 -2.39 -0.02 0.43 16 49 H 0.02 0.92 6.34 -2.38 -0.02 0.90 16 50 H 0.37 22.20 7.03 -92.70 -0.65 21.55 16 51 H 0.24 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -89.87 401.87 2.79 -87.08 By element: Atomic # 1 Polarization: 33.40 SS G_CDS: 0.27 Total: 33.67 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: 6.78 Total: 9.83 kcal Atomic # 7 Polarization: -138.32 SS G_CDS: -5.22 Total: -143.53 kcal Atomic # 8 Polarization: -39.89 SS G_CDS: -1.08 Total: -40.98 kcal Atomic # 14 Polarization: 51.89 SS G_CDS: 2.03 Total: 53.92 kcal Total: -89.87 2.79 -87.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328644216.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.709 kcal (2) G-P(sol) polarization free energy of solvation -89.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds