Wall clock time and date at job start Wed Apr 1 2020 05:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46505 * 109.47131 * 2 1 4 4 C 1.36346 * 125.63288 * 90.02242 * 3 2 1 5 5 C 1.34854 * 108.21546 * 179.97438 * 4 3 2 6 6 C 1.40886 * 107.41728 * 359.97438 * 5 4 3 7 7 C 1.50699 * 126.29258 * 179.97438 * 6 5 4 8 8 N 1.46497 * 109.47180 * 89.97638 * 7 6 5 9 9 C 1.46505 * 120.00190 * 270.00346 * 8 7 6 10 10 C 1.34773 * 120.00222 * 90.00238 * 8 7 6 11 11 O 1.21349 * 119.99892 * 354.97929 * 10 8 7 12 12 C 1.49445 * 120.00325 * 174.97728 * 10 8 7 13 13 O 1.21351 * 119.99819 * 85.02970 * 12 10 8 14 14 N 1.34774 * 120.00329 * 265.03137 * 12 10 8 15 15 C 1.46932 * 120.62917 * 354.84554 * 14 12 10 16 16 C 1.53190 * 108.77510 * 233.58582 * 15 14 12 17 17 C 1.53043 * 109.31308 * 305.36484 * 16 15 14 18 18 C 1.53031 * 109.53845 * 61.36334 * 17 16 15 19 19 H 1.08996 * 109.50215 * 58.59109 * 18 17 16 20 20 C 1.50705 * 109.50055 * 178.68612 * 18 17 16 21 21 H 1.07999 * 119.99562 * 34.88208 * 20 18 17 22 22 C 1.37874 * 120.00638 * 214.89060 * 20 18 17 23 23 N 1.31510 * 120.00415 * 184.79606 * 22 20 18 24 24 Si 1.86804 * 119.99610 * 4.79356 * 22 20 18 25 25 H 1.48498 * 109.47274 * 94.76488 * 24 22 20 26 26 H 1.48499 * 109.47124 * 214.76546 * 24 22 20 27 27 H 1.48498 * 109.47131 * 334.76383 * 24 22 20 28 28 C 1.46923 * 120.63461 * 174.56476 * 14 12 10 29 29 C 1.34855 * 107.41812 * 359.73917 * 6 5 4 30 30 H 1.09000 * 109.47240 * 300.00388 * 1 2 3 31 31 H 1.09010 * 109.46875 * 59.99856 * 1 2 3 32 32 H 1.08996 * 109.47778 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47420 * 240.00119 * 2 1 3 34 34 H 1.08996 * 109.47002 * 119.99989 * 2 1 3 35 35 H 1.07997 * 125.89388 * 359.97438 * 4 3 2 36 36 H 1.08003 * 126.28970 * 180.02562 * 5 4 3 37 37 H 1.08994 * 109.47321 * 209.98140 * 7 6 5 38 38 H 1.09001 * 109.46818 * 329.98067 * 7 6 5 39 39 H 1.08999 * 109.47135 * 95.14387 * 9 8 7 40 40 H 1.08997 * 109.47297 * 215.15034 * 9 8 7 41 41 H 1.09004 * 109.46918 * 335.14690 * 9 8 7 42 42 H 1.09005 * 109.58299 * 353.36977 * 15 14 12 43 43 H 1.08997 * 109.58607 * 113.65361 * 15 14 12 44 44 H 1.09005 * 109.50044 * 65.31313 * 16 15 14 45 45 H 1.08996 * 109.49842 * 185.41134 * 16 15 14 46 46 H 1.09002 * 109.45923 * 181.38880 * 17 16 15 47 47 H 1.09008 * 109.45411 * 301.35675 * 17 16 15 48 48 H 0.96996 * 119.99945 * 179.97438 * 23 22 20 49 49 H 1.09004 * 109.58673 * 246.20209 * 28 14 12 50 50 H 1.09000 * 109.58289 * 6.62371 * 28 14 12 51 51 H 1.07998 * 125.88778 * 180.25541 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2835 2.1300 1.1082 5 6 2.7128 3.3430 0.7045 6 6 2.7132 3.3429 -0.7043 7 6 3.1180 4.4880 -1.5963 8 7 4.5517 4.3993 -1.8845 9 6 5.5179 5.0633 -1.0060 10 6 4.9817 3.7069 -2.9578 11 8 4.1908 3.0818 -3.6333 12 6 6.4325 3.7091 -3.3163 13 8 7.1894 2.9218 -2.7871 14 7 6.9004 4.5853 -4.2271 15 6 5.9808 5.4675 -4.9585 16 6 6.2272 5.2998 -6.4611 17 6 7.7073 5.5465 -6.7620 18 6 8.5597 4.5182 -6.0151 19 1 8.2690 3.5133 -6.3212 20 6 10.0148 4.7416 -6.3374 21 1 10.3856 5.7439 -6.4932 22 6 10.8727 3.6665 -6.4335 23 7 12.1589 3.8663 -6.6210 24 14 10.2079 1.9261 -6.2972 25 1 9.9429 1.3896 -7.6563 26 1 11.2066 1.0670 -5.6119 27 1 8.9456 1.9382 -5.5151 28 6 8.3403 4.6809 -4.5033 29 6 2.2896 2.1279 -1.1080 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8932 -0.5138 0.8900 35 1 2.1694 1.8074 2.1325 36 1 3.0037 4.1635 1.3438 37 1 2.5562 4.4384 -2.5290 38 1 2.9061 5.4321 -1.0943 39 1 5.8891 4.3505 -0.2696 40 1 6.3510 5.4389 -1.6001 41 1 5.0326 5.8945 -0.4945 42 1 4.9512 5.1967 -4.7245 43 1 6.1609 6.5030 -4.6698 44 1 5.9583 4.2875 -6.7632 45 1 5.6194 6.0177 -7.0118 46 1 7.8806 5.4520 -7.8340 47 1 7.9815 6.5502 -6.4369 48 1 12.7625 3.1099 -6.6882 49 1 8.7106 5.6538 -4.1802 50 1 8.8680 3.8909 -3.9689 51 1 2.1809 1.8034 -2.1324 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333444229.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:08 Heat of formation + Delta-G solvation = -14.544863 kcal Electronic energy + Delta-G solvation = -31406.349298 eV Core-core repulsion = 27306.871805 eV Total energy + Delta-G solvation = -4099.477493 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.42395 -40.54174 -38.59010 -36.92390 -35.92914 -34.36353 -33.38523 -31.92883 -30.74177 -30.48121 -29.19860 -27.19141 -26.92281 -25.27342 -25.11346 -23.50783 -22.19520 -21.89580 -20.40720 -19.85330 -19.32171 -18.45938 -17.61077 -17.39816 -16.78680 -16.53351 -16.29388 -15.25924 -15.04445 -14.71812 -14.65279 -14.54999 -14.06572 -13.87049 -13.69461 -13.66072 -13.44608 -13.21153 -13.00319 -12.87512 -12.69303 -12.55990 -12.48496 -12.46919 -12.30979 -12.27763 -12.21999 -11.68663 -11.38928 -11.27629 -11.19033 -11.01976 -10.77406 -10.51436 -10.08534 -9.65783 -9.55807 -9.25190 -9.06981 -8.90069 -8.64057 -8.58364 -8.21234 -8.16444 -6.11894 -4.12988 2.06196 2.31849 2.37681 2.74992 2.77274 3.09258 3.33087 3.43215 3.53145 3.67725 4.29430 4.38258 4.43718 4.58350 4.74212 4.86719 4.89832 5.03464 5.06198 5.14086 5.18705 5.20347 5.23398 5.28742 5.35505 5.43159 5.54166 5.55304 5.56844 5.59181 5.68378 5.80632 6.02189 6.03726 6.13864 6.21421 6.26348 6.34094 6.42565 6.54685 6.64474 6.75476 6.81723 6.85419 7.06079 7.13747 7.24878 7.25606 7.34941 7.65314 7.71662 7.91037 8.24157 8.47645 8.93166 9.51809 11.00192 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016402 B = 0.002646 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.671595 B =10579.166870 C =11168.180926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.100 3.900 3 N -0.449 5.449 4 C -0.022 4.022 5 C -0.185 4.185 6 C -0.194 4.194 7 C 0.190 3.810 8 N -0.596 5.596 9 C 0.079 3.921 10 C 0.521 3.479 11 O -0.519 6.519 12 C 0.507 3.493 13 O -0.520 6.520 14 N -0.590 5.590 15 C 0.109 3.891 16 C -0.136 4.136 17 C -0.104 4.104 18 C 0.002 3.998 19 H 0.040 0.960 20 C -0.513 4.513 21 H 0.076 0.924 22 C 0.076 3.924 23 N -0.894 5.894 24 Si 0.868 3.132 25 H -0.278 1.278 26 H -0.287 1.287 27 H -0.256 1.256 28 C 0.112 3.888 29 C 0.020 3.980 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.157 0.843 36 H 0.133 0.867 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.067 0.933 46 H 0.061 0.939 47 H 0.055 0.945 48 H 0.265 0.735 49 H 0.068 0.932 50 H 0.083 0.917 51 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.119 0.631 14.670 28.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.022 4.022 3 N -0.125 5.125 4 C -0.151 4.151 5 C -0.210 4.210 6 C -0.202 4.202 7 C 0.068 3.932 8 N -0.331 5.331 9 C -0.064 4.064 10 C 0.304 3.696 11 O -0.393 6.393 12 C 0.289 3.711 13 O -0.396 6.396 14 N -0.325 5.325 15 C -0.014 4.014 16 C -0.174 4.174 17 C -0.142 4.142 18 C -0.018 4.018 19 H 0.058 0.942 20 C -0.551 4.551 21 H 0.094 0.906 22 C -0.127 4.127 23 N -0.531 5.531 24 Si 0.695 3.305 25 H -0.204 1.204 26 H -0.213 1.213 27 H -0.180 1.180 28 C -0.008 4.008 29 C -0.112 4.112 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.175 0.825 36 H 0.151 0.849 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.097 0.903 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.081 0.919 45 H 0.085 0.915 46 H 0.080 0.920 47 H 0.073 0.927 48 H 0.075 0.925 49 H 0.086 0.914 50 H 0.102 0.898 51 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -24.058 -0.571 14.571 28.132 hybrid contribution -0.134 -1.105 0.192 1.129 sum -24.191 -1.676 14.763 28.390 Atomic orbital electron populations 1.22163 0.94397 1.02891 1.03155 1.21823 0.95398 0.80640 1.04347 1.44176 1.50510 1.11607 1.06173 1.21734 1.09131 0.92816 0.91399 1.20740 1.08437 0.97564 0.94251 1.19689 1.10000 0.96319 0.94158 1.19760 0.79415 0.95679 0.98350 1.47958 1.07652 1.51279 1.26180 1.21852 0.92487 0.97520 0.94559 1.20502 0.89153 0.79122 0.80852 1.90730 1.55018 1.41318 1.52256 1.20165 0.87878 0.82035 0.81055 1.90790 1.56650 1.38046 1.54105 1.48588 1.10057 1.35974 1.37838 1.21742 0.92481 0.93964 0.93205 1.21988 0.99298 1.02037 0.94120 1.21588 0.91709 0.99989 1.00930 1.19633 0.96445 0.95904 0.89811 0.94226 1.20873 0.90453 0.95399 1.48400 0.90593 1.25068 0.94637 0.99037 0.93913 1.69900 1.02650 1.31522 1.49045 0.86952 0.79870 0.84952 0.78733 1.20357 1.21274 1.18015 1.22686 0.75647 1.02038 1.00421 1.21801 1.05892 0.91963 0.91541 0.91931 0.91784 0.90823 0.89259 0.89391 0.82526 0.84903 0.89537 0.89503 0.91964 0.91123 0.90268 0.91033 0.91077 0.91862 0.91484 0.92009 0.92654 0.92529 0.91368 0.89843 0.82086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.93 10.24 37.15 0.38 -0.55 16 2 C 0.10 0.69 6.81 -4.04 -0.03 0.66 16 3 N -0.45 -4.52 2.75 -117.13 -0.32 -4.84 16 4 C -0.02 -0.21 11.43 -16.75 -0.19 -0.40 16 5 C -0.19 -1.93 10.81 -39.78 -0.43 -2.36 16 6 C -0.19 -2.27 5.72 -104.82 -0.60 -2.87 16 7 C 0.19 2.04 5.91 -5.20 -0.03 2.00 16 8 N -0.60 -7.70 2.86 -183.47 -0.52 -8.22 16 9 C 0.08 0.85 10.28 59.85 0.62 1.46 16 10 C 0.52 8.79 5.59 -11.59 -0.06 8.72 16 11 O -0.52 -9.68 16.51 5.50 0.09 -9.59 16 12 C 0.51 9.93 5.69 -11.59 -0.07 9.86 16 13 O -0.52 -12.07 16.52 5.50 0.09 -11.98 16 14 N -0.59 -10.96 2.97 -173.01 -0.51 -11.47 16 15 C 0.11 1.62 6.32 -3.71 -0.02 1.60 16 16 C -0.14 -2.13 6.08 -26.61 -0.16 -2.29 16 17 C -0.10 -1.96 5.15 -26.69 -0.14 -2.10 16 18 C 0.00 0.04 1.90 -91.43 -0.17 -0.13 16 19 H 0.04 0.98 5.07 -51.93 -0.26 0.72 16 20 C -0.51 -13.91 8.86 -34.44 -0.31 -14.22 16 21 H 0.08 2.20 8.06 -52.49 -0.42 1.78 16 22 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 23 N -0.89 -27.04 13.96 55.43 0.77 -26.26 16 24 Si 0.87 22.35 27.31 -169.99 -4.64 17.70 16 25 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 27 H -0.26 -6.70 6.37 56.52 0.36 -6.34 16 28 C 0.11 2.39 5.74 -3.49 -0.02 2.37 16 29 C 0.02 0.23 11.35 -16.75 -0.19 0.04 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 32 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.16 1.10 8.06 -52.49 -0.42 0.67 16 36 H 0.13 1.15 8.06 -52.48 -0.42 0.72 16 37 H 0.09 0.96 7.50 -51.93 -0.39 0.57 16 38 H 0.09 0.69 7.86 -51.93 -0.41 0.28 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.82 6.99 -51.93 -0.36 0.46 16 41 H 0.08 0.58 7.83 -51.93 -0.41 0.17 16 42 H 0.07 1.00 6.22 -51.93 -0.32 0.68 16 43 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 47 H 0.05 0.99 8.14 -51.92 -0.42 0.57 16 48 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 49 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 50 H 0.08 2.00 7.00 -51.93 -0.36 1.64 16 51 H 0.16 1.99 8.06 -52.49 -0.42 1.56 16 LS Contribution 413.48 15.07 6.23 6.23 Total: -1.00 -35.04 413.48 -8.80 -43.84 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -8.46 Total: 0.68 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -1.52 Total: 3.91 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: -0.59 Total: -50.79 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: 0.18 Total: -21.56 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.64 Total: 17.70 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -35.04 -8.80 -43.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333444229.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.293 kcal (2) G-P(sol) polarization free energy of solvation -35.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds