Wall clock time and date at job start Wed Apr 1 2020 05:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46505 * 109.47131 * 2 1 4 4 C 1.36346 * 125.63288 * 90.02242 * 3 2 1 5 5 C 1.34854 * 108.21546 * 179.97438 * 4 3 2 6 6 C 1.40886 * 107.41728 * 359.97438 * 5 4 3 7 7 C 1.50699 * 126.29258 * 179.97438 * 6 5 4 8 8 N 1.46497 * 109.47180 * 89.97638 * 7 6 5 9 9 C 1.46505 * 120.00190 * 270.00346 * 8 7 6 10 10 C 1.34773 * 120.00222 * 90.00238 * 8 7 6 11 11 O 1.21349 * 119.99892 * 354.97929 * 10 8 7 12 12 C 1.49445 * 120.00325 * 174.97728 * 10 8 7 13 13 O 1.21351 * 119.99819 * 85.02970 * 12 10 8 14 14 N 1.34774 * 120.00329 * 265.03137 * 12 10 8 15 15 C 1.46932 * 120.62917 * 354.84554 * 14 12 10 16 16 C 1.53190 * 108.77510 * 233.58582 * 15 14 12 17 17 C 1.53043 * 109.31308 * 305.36484 * 16 15 14 18 18 C 1.53031 * 109.53845 * 61.36334 * 17 16 15 19 19 H 1.08996 * 109.50215 * 58.59109 * 18 17 16 20 20 C 1.50705 * 109.50055 * 178.68612 * 18 17 16 21 21 H 1.07999 * 119.99562 * 34.88208 * 20 18 17 22 22 C 1.37874 * 120.00638 * 214.89060 * 20 18 17 23 23 N 1.31510 * 120.00415 * 184.79606 * 22 20 18 24 24 Si 1.86804 * 119.99610 * 4.79356 * 22 20 18 25 25 H 1.48498 * 109.47274 * 94.76488 * 24 22 20 26 26 H 1.48499 * 109.47124 * 214.76546 * 24 22 20 27 27 H 1.48498 * 109.47131 * 334.76383 * 24 22 20 28 28 C 1.46923 * 120.63461 * 174.56476 * 14 12 10 29 29 C 1.34855 * 107.41812 * 359.73917 * 6 5 4 30 30 H 1.09000 * 109.47240 * 300.00388 * 1 2 3 31 31 H 1.09010 * 109.46875 * 59.99856 * 1 2 3 32 32 H 1.08996 * 109.47778 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47420 * 240.00119 * 2 1 3 34 34 H 1.08996 * 109.47002 * 119.99989 * 2 1 3 35 35 H 1.07997 * 125.89388 * 359.97438 * 4 3 2 36 36 H 1.08003 * 126.28970 * 180.02562 * 5 4 3 37 37 H 1.08994 * 109.47321 * 209.98140 * 7 6 5 38 38 H 1.09001 * 109.46818 * 329.98067 * 7 6 5 39 39 H 1.08999 * 109.47135 * 95.14387 * 9 8 7 40 40 H 1.08997 * 109.47297 * 215.15034 * 9 8 7 41 41 H 1.09004 * 109.46918 * 335.14690 * 9 8 7 42 42 H 1.09005 * 109.58299 * 353.36977 * 15 14 12 43 43 H 1.08997 * 109.58607 * 113.65361 * 15 14 12 44 44 H 1.09005 * 109.50044 * 65.31313 * 16 15 14 45 45 H 1.08996 * 109.49842 * 185.41134 * 16 15 14 46 46 H 1.09002 * 109.45923 * 181.38880 * 17 16 15 47 47 H 1.09008 * 109.45411 * 301.35675 * 17 16 15 48 48 H 0.96996 * 119.99945 * 179.97438 * 23 22 20 49 49 H 1.09004 * 109.58673 * 246.20209 * 28 14 12 50 50 H 1.09000 * 109.58289 * 6.62371 * 28 14 12 51 51 H 1.07998 * 125.88778 * 180.25541 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2835 2.1300 1.1082 5 6 2.7128 3.3430 0.7045 6 6 2.7132 3.3429 -0.7043 7 6 3.1180 4.4880 -1.5963 8 7 4.5517 4.3993 -1.8845 9 6 5.5179 5.0633 -1.0060 10 6 4.9817 3.7069 -2.9578 11 8 4.1908 3.0818 -3.6333 12 6 6.4325 3.7091 -3.3163 13 8 7.1894 2.9218 -2.7871 14 7 6.9004 4.5853 -4.2271 15 6 5.9808 5.4675 -4.9585 16 6 6.2272 5.2998 -6.4611 17 6 7.7073 5.5465 -6.7620 18 6 8.5597 4.5182 -6.0151 19 1 8.2690 3.5133 -6.3212 20 6 10.0148 4.7416 -6.3374 21 1 10.3856 5.7439 -6.4932 22 6 10.8727 3.6665 -6.4335 23 7 12.1589 3.8663 -6.6210 24 14 10.2079 1.9261 -6.2972 25 1 9.9429 1.3896 -7.6563 26 1 11.2066 1.0670 -5.6119 27 1 8.9456 1.9382 -5.5151 28 6 8.3403 4.6809 -4.5033 29 6 2.2896 2.1279 -1.1080 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8932 -0.5138 0.8900 35 1 2.1694 1.8074 2.1325 36 1 3.0037 4.1635 1.3438 37 1 2.5562 4.4384 -2.5290 38 1 2.9061 5.4321 -1.0943 39 1 5.8891 4.3505 -0.2696 40 1 6.3510 5.4389 -1.6001 41 1 5.0326 5.8945 -0.4945 42 1 4.9512 5.1967 -4.7245 43 1 6.1609 6.5030 -4.6698 44 1 5.9583 4.2875 -6.7632 45 1 5.6194 6.0177 -7.0118 46 1 7.8806 5.4520 -7.8340 47 1 7.9815 6.5502 -6.4369 48 1 12.7625 3.1099 -6.6882 49 1 8.7106 5.6538 -4.1802 50 1 8.8680 3.8909 -3.9689 51 1 2.1809 1.8034 -2.1324 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333444229.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:07 Heat of formation + Delta-G solvation = -35.854470 kcal Electronic energy + Delta-G solvation = -31407.273352 eV Core-core repulsion = 27306.871805 eV Total energy + Delta-G solvation = -4100.401546 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.27837 -41.83314 -39.96899 -38.51752 -37.00345 -35.31327 -35.02557 -33.66993 -32.24237 -31.44718 -29.89827 -28.25694 -28.02486 -27.05225 -26.37000 -24.28264 -23.47678 -23.39527 -21.29522 -21.01569 -20.47496 -19.82064 -19.13652 -18.64938 -18.27131 -17.70443 -17.65802 -16.57593 -16.14562 -15.91759 -15.83967 -15.59460 -15.38042 -15.34345 -15.09977 -14.79367 -14.44383 -14.37247 -14.35122 -14.16005 -14.04009 -13.84870 -13.70586 -13.38360 -13.09038 -13.07650 -13.05909 -12.87760 -12.80659 -12.77195 -12.57516 -12.24840 -12.10312 -12.02300 -11.78583 -11.64692 -11.27378 -11.06184 -10.74886 -10.65807 -9.94609 -9.74962 -9.42455 -9.02213 -8.35849 -6.36824 0.94808 1.03026 1.22716 1.29466 1.30645 1.41924 1.51785 2.04208 2.09661 2.27224 2.50771 3.02192 3.13487 3.77117 3.88297 4.07320 4.08090 4.09165 4.15057 4.15761 4.26248 4.30308 4.35425 4.42318 4.43312 4.50850 4.57905 4.62192 4.68587 4.69278 4.75530 4.81147 4.85925 4.89232 4.90120 4.97252 5.03335 5.14722 5.20769 5.27335 5.30395 5.33934 5.49365 5.56924 5.63015 5.67647 5.98527 6.10179 6.15814 6.28509 6.31298 6.53669 6.68350 6.70041 6.76454 7.29793 8.80087 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016402 B = 0.002646 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.671595 B =10579.166870 C =11168.180926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.092 3.908 3 N -0.451 5.451 4 C -0.023 4.023 5 C -0.198 4.198 6 C -0.206 4.206 7 C 0.188 3.812 8 N -0.580 5.580 9 C 0.074 3.926 10 C 0.525 3.475 11 O -0.543 6.543 12 C 0.501 3.499 13 O -0.568 6.568 14 N -0.588 5.588 15 C 0.106 3.894 16 C -0.129 4.129 17 C -0.100 4.100 18 C -0.002 4.002 19 H 0.019 0.981 20 C -0.503 4.503 21 H 0.052 0.948 22 C 0.027 3.973 23 N -0.937 5.937 24 Si 0.922 3.078 25 H -0.267 1.267 26 H -0.288 1.288 27 H -0.268 1.268 28 C 0.123 3.877 29 C -0.010 4.010 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.184 0.816 36 H 0.152 0.848 37 H 0.081 0.919 38 H 0.125 0.875 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.124 0.876 42 H 0.086 0.914 43 H 0.106 0.894 44 H 0.046 0.954 45 H 0.109 0.891 46 H 0.056 0.944 47 H 0.069 0.931 48 H 0.266 0.734 49 H 0.084 0.916 50 H 0.049 0.951 51 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.072 1.976 16.230 31.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.029 4.029 3 N -0.126 5.126 4 C -0.152 4.152 5 C -0.222 4.222 6 C -0.214 4.214 7 C 0.068 3.932 8 N -0.312 5.312 9 C -0.068 4.068 10 C 0.307 3.693 11 O -0.421 6.421 12 C 0.284 3.716 13 O -0.447 6.447 14 N -0.320 5.320 15 C -0.016 4.016 16 C -0.167 4.167 17 C -0.137 4.137 18 C -0.022 4.022 19 H 0.037 0.963 20 C -0.542 4.542 21 H 0.070 0.930 22 C -0.171 4.171 23 N -0.577 5.577 24 Si 0.748 3.252 25 H -0.192 1.192 26 H -0.214 1.214 27 H -0.193 1.193 28 C 0.001 3.999 29 C -0.142 4.142 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.110 0.890 33 H 0.103 0.897 34 H 0.124 0.876 35 H 0.201 0.799 36 H 0.170 0.830 37 H 0.099 0.901 38 H 0.143 0.857 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.142 0.858 42 H 0.104 0.896 43 H 0.124 0.876 44 H 0.065 0.935 45 H 0.128 0.872 46 H 0.075 0.925 47 H 0.087 0.913 48 H 0.075 0.925 49 H 0.102 0.898 50 H 0.067 0.933 51 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -27.061 0.806 16.136 31.517 hybrid contribution 0.741 -1.470 -0.234 1.663 sum -26.319 -0.664 15.903 30.758 Atomic orbital electron populations 1.22097 0.93214 1.03924 1.02529 1.22060 0.96370 0.79396 1.05045 1.44420 1.49971 1.12473 1.05784 1.22273 1.07890 0.92678 0.92376 1.21032 1.08804 0.98588 0.93824 1.19903 1.10070 0.96342 0.95056 1.20028 0.77502 0.97224 0.98478 1.48042 1.09131 1.49416 1.24644 1.22061 0.92327 0.98468 0.93934 1.19987 0.87317 0.79874 0.82156 1.90727 1.54871 1.42799 1.53684 1.20769 0.89058 0.81150 0.80575 1.90756 1.58251 1.39891 1.55778 1.48580 1.09375 1.36266 1.37816 1.22067 0.92330 0.94961 0.92200 1.21946 0.97241 1.02380 0.95116 1.21477 0.93293 0.99041 0.99922 1.19626 0.94705 0.96317 0.91566 0.96285 1.21156 0.92567 0.94011 1.46428 0.92958 1.25679 0.94836 1.02075 0.94547 1.69997 1.03704 1.32368 1.51606 0.86108 0.78490 0.81764 0.78802 1.19201 1.21400 1.19291 1.22205 0.77572 1.01548 0.98570 1.21814 1.07654 0.93012 0.91717 0.91777 0.93077 0.88964 0.89711 0.87582 0.79858 0.83009 0.90096 0.85692 0.92864 0.92098 0.85802 0.89575 0.87595 0.93546 0.87228 0.92548 0.91267 0.92463 0.89811 0.93283 0.83543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 10.24 71.98 0.74 -0.81 16 2 C 0.09 1.17 6.81 86.38 0.59 1.76 16 3 N -0.45 -8.59 2.75 -524.48 -1.44 -10.03 16 4 C -0.02 -0.39 11.43 83.21 0.95 0.56 16 5 C -0.20 -3.64 10.81 22.14 0.24 -3.40 16 6 C -0.21 -4.48 5.72 -19.99 -0.11 -4.59 16 7 C 0.19 3.55 5.91 85.63 0.51 4.06 16 8 N -0.58 -13.74 2.86 -852.74 -2.44 -16.18 16 9 C 0.07 1.40 10.28 127.77 1.31 2.71 16 10 C 0.52 17.24 5.59 87.27 0.49 17.73 16 11 O -0.54 -20.12 16.51 -3.24 -0.05 -20.17 16 12 C 0.50 19.60 5.69 87.27 0.50 20.10 16 13 O -0.57 -27.09 16.52 -3.25 -0.05 -27.14 16 14 N -0.59 -21.23 2.97 -819.64 -2.43 -23.66 16 15 C 0.11 2.81 6.32 86.36 0.55 3.36 16 16 C -0.13 -3.64 6.08 30.67 0.19 -3.45 16 17 C -0.10 -3.57 5.15 30.62 0.16 -3.41 16 18 C 0.00 -0.11 1.90 -11.32 -0.02 -0.13 16 19 H 0.02 0.95 5.07 -2.39 -0.01 0.94 16 20 C -0.50 -27.79 8.86 25.60 0.23 -27.57 16 21 H 0.05 3.09 8.06 -2.91 -0.02 3.07 16 22 C 0.03 1.60 5.47 84.65 0.46 2.06 16 23 N -0.94 -58.21 13.96 21.45 0.30 -57.91 16 24 Si 0.92 47.77 27.31 68.60 1.87 49.65 16 25 H -0.27 -13.21 7.11 99.48 0.71 -12.50 16 26 H -0.29 -14.83 7.11 99.48 0.71 -14.12 16 27 H -0.27 -14.30 6.37 99.48 0.63 -13.67 16 28 C 0.12 5.24 5.74 86.51 0.50 5.73 16 29 C -0.01 -0.23 11.35 83.22 0.94 0.71 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 32 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.18 1.99 8.06 -2.91 -0.02 1.97 16 36 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 37 H 0.08 1.65 7.50 -2.39 -0.02 1.63 16 38 H 0.13 1.42 7.86 -2.39 -0.02 1.40 16 39 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.06 1.30 6.99 -2.39 -0.02 1.28 16 41 H 0.12 1.23 7.83 -2.39 -0.02 1.22 16 42 H 0.09 2.13 6.22 -2.38 -0.01 2.11 16 43 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 45 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 46 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 47 H 0.07 2.29 8.14 -2.38 -0.02 2.28 16 48 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 49 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 50 H 0.05 2.43 7.00 -2.39 -0.02 2.41 16 51 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -80.09 413.48 4.79 -75.29 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: 0.83 Total: 14.76 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: 8.20 Total: 15.41 kcal Atomic # 7 Polarization: -101.78 SS G_CDS: -6.01 Total: -107.79 kcal Atomic # 8 Polarization: -47.21 SS G_CDS: -0.11 Total: -47.32 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 1.87 Total: 49.65 kcal Total: -80.09 4.79 -75.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333444229.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.436 kcal (2) G-P(sol) polarization free energy of solvation -80.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds