Wall clock time and date at job start Wed Apr 1 2020 05:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 N 1.46499 * 109.47206 * 2 1 4 4 C 1.36345 * 125.63543 * 270.04195 * 3 2 1 5 5 C 1.34849 * 108.21636 * 179.68887 * 4 3 2 6 6 C 1.40894 * 107.41683 * 0.43479 * 5 4 3 7 7 C 1.50698 * 126.29114 * 179.83330 * 6 5 4 8 8 N 1.46499 * 109.47105 * 269.68684 * 7 6 5 9 9 C 1.46509 * 119.99685 * 270.00451 * 8 7 6 10 10 C 1.34776 * 120.00301 * 89.99379 * 8 7 6 11 11 O 1.21349 * 119.99908 * 3.50613 * 10 8 7 12 12 C 1.49452 * 119.99766 * 183.49737 * 10 8 7 13 13 O 1.21347 * 120.00694 * 6.23242 * 12 10 8 14 14 N 1.34785 * 119.99718 * 186.22815 * 12 10 8 15 15 C 1.46928 * 120.63026 * 355.42804 * 14 12 10 16 16 C 1.53191 * 108.77322 * 126.41206 * 15 14 12 17 17 C 1.53034 * 109.31263 * 54.63740 * 16 15 14 18 18 C 1.53045 * 109.53911 * 298.63390 * 17 16 15 19 19 H 1.09007 * 109.51948 * 301.39597 * 18 17 16 20 20 C 1.50697 * 109.50079 * 181.31828 * 18 17 16 21 21 H 1.08009 * 119.99802 * 0.15722 * 20 18 17 22 22 C 1.37869 * 120.00318 * 180.43626 * 20 18 17 23 23 N 1.31522 * 119.99740 * 359.72264 * 22 20 18 24 24 Si 1.86802 * 120.00393 * 179.72542 * 22 20 18 25 25 H 1.48495 * 109.47152 * 89.99787 * 24 22 20 26 26 H 1.48504 * 109.47165 * 209.99833 * 24 22 20 27 27 H 1.48500 * 109.46880 * 329.99613 * 24 22 20 28 28 C 1.46925 * 120.62728 * 175.45217 * 14 12 10 29 29 C 1.34852 * 107.41813 * 359.56366 * 6 5 4 30 30 H 1.08995 * 109.47097 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46772 * 300.00228 * 1 2 3 32 32 H 1.08995 * 109.46992 * 59.99767 * 1 2 3 33 33 H 1.09001 * 109.46772 * 239.99772 * 2 1 3 34 34 H 1.09001 * 109.46554 * 120.00272 * 2 1 3 35 35 H 1.07997 * 125.88755 * 359.96537 * 4 3 2 36 36 H 1.08001 * 126.29348 * 180.29254 * 5 4 3 37 37 H 1.08993 * 109.47425 * 149.68533 * 7 6 5 38 38 H 1.08997 * 109.47220 * 29.68013 * 7 6 5 39 39 H 1.08999 * 109.46546 * 263.78105 * 9 8 7 40 40 H 1.08993 * 109.47049 * 23.77566 * 9 8 7 41 41 H 1.08994 * 109.47194 * 143.78206 * 9 8 7 42 42 H 1.09002 * 109.58714 * 246.20387 * 15 14 12 43 43 H 1.09002 * 109.58645 * 6.62345 * 15 14 12 44 44 H 1.09001 * 109.49463 * 174.58454 * 16 15 14 45 45 H 1.09002 * 109.49938 * 294.68313 * 16 15 14 46 46 H 1.09004 * 109.46547 * 178.61202 * 17 16 15 47 47 H 1.09002 * 109.46194 * 58.64956 * 17 16 15 48 48 H 0.97008 * 119.99816 * 180.02562 * 23 22 20 49 49 H 1.08999 * 109.58506 * 113.80619 * 28 14 12 50 50 H 1.08993 * 109.70539 * 353.44133 * 28 14 12 51 51 H 1.07993 * 125.89008 * 180.24640 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.2825 2.1304 -1.1081 5 6 2.7051 3.3457 -0.7045 6 6 2.7115 3.3434 0.7045 7 6 3.1161 4.4887 1.5965 8 7 4.5497 4.4001 1.8849 9 6 5.0169 3.6473 3.0518 10 6 5.4388 5.0108 1.0768 11 8 5.0493 5.6866 0.1472 12 6 6.9042 4.8558 1.3258 13 8 7.2967 4.0918 2.1830 14 7 7.7901 5.5646 0.5980 15 6 7.3370 6.4174 -0.5093 16 6 7.8872 7.8316 -0.2995 17 6 9.4077 7.7645 -0.1393 18 6 9.7562 6.9231 1.0907 19 1 9.2974 7.3643 1.9756 20 6 11.2524 6.8844 1.2662 21 1 11.8914 7.4096 0.5716 22 6 11.8059 6.1739 2.3100 23 7 11.0279 5.5343 3.1558 24 14 13.6610 6.1196 2.5231 25 1 14.0931 7.2466 3.3881 26 1 14.0491 4.8332 3.1555 27 1 14.3153 6.2356 1.1952 28 6 9.2271 5.4986 0.8967 29 6 2.2833 2.1301 1.1081 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.1682 1.8078 -2.1324 36 1 2.9890 4.1687 -1.3436 37 1 2.5541 4.4390 2.5290 38 1 2.9043 5.4327 1.0944 39 1 5.1755 4.3313 3.8856 40 1 4.2686 2.9047 3.3285 41 1 5.9540 3.1463 2.8096 42 1 7.7070 6.0176 -1.4534 43 1 6.2475 6.4478 -0.5250 44 1 7.6393 8.4501 -1.1620 45 1 7.4456 8.2643 0.5982 46 1 9.8046 8.7719 -0.0145 47 1 9.8466 7.3089 -1.0270 48 1 11.4173 5.0346 3.8905 49 1 9.7513 5.0240 0.0672 50 1 9.3870 4.9222 1.8078 51 1 2.1700 1.8072 2.1324 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333444240.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:12 Heat of formation + Delta-G solvation = 12.164275 kcal Electronic energy + Delta-G solvation = -31397.664534 eV Core-core repulsion = 27299.345236 eV Total energy + Delta-G solvation = -4098.319297 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.37063 -40.40549 -38.19678 -36.96508 -35.70680 -34.30023 -33.16126 -31.66630 -30.51389 -29.67158 -29.12345 -27.10148 -26.66735 -25.15652 -24.62888 -23.48555 -22.03247 -21.63096 -20.27348 -19.95801 -19.26809 -18.48455 -17.32543 -16.74262 -16.54237 -15.99985 -15.76001 -15.38606 -15.04945 -14.88477 -14.50769 -14.34522 -13.97641 -13.69827 -13.66048 -13.52696 -13.26085 -12.89925 -12.74880 -12.70644 -12.52629 -12.48443 -12.34662 -12.19886 -12.16221 -12.01597 -11.72915 -11.68579 -11.31072 -11.17324 -10.95268 -10.60321 -10.38449 -10.20456 -9.90774 -9.60368 -9.12294 -9.06844 -8.79071 -8.54442 -8.42261 -8.23789 -8.07744 -7.73923 -5.98935 -4.06867 1.93626 2.11974 2.63149 2.77321 3.20366 3.32408 3.39064 3.41858 3.79358 4.03221 4.28002 4.44083 4.56940 4.70703 4.72434 4.85564 4.97954 5.10450 5.17981 5.24247 5.31429 5.34091 5.39270 5.57334 5.59341 5.73942 5.76976 5.81191 5.89994 5.99473 6.13557 6.22881 6.30590 6.36934 6.42343 6.49651 6.66563 6.71692 6.81416 6.93075 6.94740 7.04817 7.12175 7.15419 7.26305 7.29610 7.37560 7.64408 7.87916 8.00554 8.10930 8.29152 8.40832 8.70624 8.97165 9.58358 11.06531 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018706 B = 0.002441 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.483252 B =11466.105239 C =12138.863869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.101 3.899 3 N -0.449 5.449 4 C -0.023 4.023 5 C -0.173 4.173 6 C -0.185 4.185 7 C 0.184 3.816 8 N -0.581 5.581 9 C 0.056 3.944 10 C 0.513 3.487 11 O -0.516 6.516 12 C 0.496 3.504 13 O -0.521 6.521 14 N -0.566 5.566 15 C 0.045 3.955 16 C -0.129 4.129 17 C -0.113 4.113 18 C 0.041 3.959 19 H 0.029 0.971 20 C -0.518 4.518 21 H 0.059 0.941 22 C 0.062 3.938 23 N -0.882 5.882 24 Si 0.893 3.107 25 H -0.281 1.281 26 H -0.286 1.286 27 H -0.274 1.274 28 C 0.108 3.892 29 C 0.001 3.999 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.158 0.842 36 H 0.137 0.863 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.120 0.880 42 H 0.054 0.946 43 H 0.150 0.850 44 H 0.058 0.942 45 H 0.056 0.944 46 H 0.049 0.951 47 H 0.048 0.952 48 H 0.263 0.737 49 H 0.046 0.954 50 H 0.124 0.876 51 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.130 -9.276 -4.944 24.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.020 4.020 3 N -0.125 5.125 4 C -0.151 4.151 5 C -0.198 4.198 6 C -0.193 4.193 7 C 0.062 3.938 8 N -0.314 5.314 9 C -0.086 4.086 10 C 0.298 3.702 11 O -0.394 6.394 12 C 0.278 3.722 13 O -0.400 6.400 14 N -0.297 5.297 15 C -0.076 4.076 16 C -0.168 4.168 17 C -0.151 4.151 18 C 0.022 3.978 19 H 0.047 0.953 20 C -0.556 4.556 21 H 0.077 0.923 22 C -0.141 4.141 23 N -0.520 5.520 24 Si 0.721 3.279 25 H -0.207 1.207 26 H -0.212 1.212 27 H -0.199 1.199 28 C -0.012 4.012 29 C -0.130 4.130 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.175 0.825 36 H 0.155 0.845 37 H 0.099 0.901 38 H 0.110 0.890 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.138 0.862 42 H 0.073 0.927 43 H 0.166 0.834 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.068 0.932 47 H 0.067 0.933 48 H 0.073 0.927 49 H 0.064 0.936 50 H 0.142 0.858 51 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -22.220 -9.810 -4.809 24.760 hybrid contribution 1.124 -0.144 0.130 1.140 sum -21.096 -9.953 -4.679 23.790 Atomic orbital electron populations 1.22172 0.94511 1.02803 1.03192 1.21795 0.95307 0.80729 1.04216 1.44103 1.50892 1.11430 1.06120 1.21769 1.09306 0.92701 0.91358 1.20893 1.06876 0.97457 0.94585 1.19740 1.09036 0.95913 0.94589 1.19771 0.79493 0.96828 0.97751 1.47831 1.06021 1.50603 1.26900 1.22566 1.03012 0.96170 0.86820 1.20638 0.88063 0.79328 0.82166 1.90201 1.79480 1.39319 1.30447 1.19828 0.86550 0.82704 0.83143 1.90566 1.79338 1.36729 1.33331 1.48461 1.08868 1.41689 1.30675 1.23228 1.06207 0.89966 0.88210 1.21893 0.97909 0.96129 1.00828 1.21663 0.93063 1.00255 1.00093 1.18966 0.95780 0.90316 0.92764 0.95304 1.21101 0.90997 1.31737 1.11802 0.92298 1.25058 0.98080 0.95288 0.95671 1.69881 1.34547 1.32208 1.15387 0.86577 0.85674 0.77389 0.78270 1.20689 1.21191 1.19916 1.22451 0.73844 1.02200 1.02714 1.21590 1.07951 0.92133 0.91337 0.90905 0.91864 0.91879 0.89421 0.89403 0.82496 0.84481 0.90078 0.89038 0.92548 0.92296 0.86237 0.92729 0.83372 0.92319 0.92505 0.93186 0.93292 0.92684 0.93564 0.85847 0.82517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.80 10.24 37.16 0.38 -0.42 16 2 C 0.10 0.59 6.81 -4.04 -0.03 0.56 16 3 N -0.45 -4.20 2.75 -117.12 -0.32 -4.52 16 4 C -0.02 -0.24 11.43 -16.75 -0.19 -0.43 16 5 C -0.17 -2.18 10.81 -39.78 -0.43 -2.61 16 6 C -0.18 -2.24 5.72 -104.82 -0.60 -2.84 16 7 C 0.18 2.22 5.90 -5.19 -0.03 2.19 16 8 N -0.58 -8.60 2.86 -183.47 -0.52 -9.12 16 9 C 0.06 0.77 9.76 59.85 0.58 1.35 16 10 C 0.51 9.18 7.66 -11.58 -0.09 9.09 16 11 O -0.52 -9.32 12.57 5.50 0.07 -9.25 16 12 C 0.50 10.43 7.65 -11.58 -0.09 10.34 16 13 O -0.52 -11.89 12.53 5.50 0.07 -11.82 16 14 N -0.57 -12.27 2.97 -173.27 -0.52 -12.79 16 15 C 0.05 0.85 6.27 -3.71 -0.02 0.83 16 16 C -0.13 -2.39 6.08 -26.61 -0.16 -2.55 16 17 C -0.11 -2.40 5.11 -26.69 -0.14 -2.53 16 18 C 0.04 1.04 2.25 -91.65 -0.21 0.83 16 19 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 20 C -0.52 -14.21 8.57 -34.44 -0.30 -14.51 16 21 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 22 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 23 N -0.88 -25.59 11.38 55.43 0.63 -24.96 16 24 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 28 C 0.11 2.68 5.38 -3.71 -0.02 2.66 16 29 C 0.00 0.01 11.35 -16.75 -0.19 -0.18 16 30 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.16 1.27 8.06 -52.49 -0.42 0.85 16 36 H 0.14 1.80 8.06 -52.49 -0.42 1.38 16 37 H 0.08 0.76 8.07 -51.93 -0.42 0.34 16 38 H 0.09 1.17 7.38 -51.93 -0.38 0.78 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.61 8.02 -51.93 -0.42 0.20 16 41 H 0.12 1.99 5.04 -52.53 -0.26 1.72 16 42 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.15 2.73 3.71 -57.19 -0.21 2.52 16 44 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 48 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 49 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 50 H 0.12 3.48 5.14 -51.93 -0.27 3.21 16 51 H 0.16 1.24 8.06 -52.49 -0.42 0.81 16 LS Contribution 405.63 15.07 6.11 6.11 Total: -1.00 -31.97 405.63 -9.39 -41.36 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -8.27 Total: 5.26 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: -1.62 Total: 3.39 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: -0.73 Total: -51.39 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: 0.14 Total: -21.07 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.97 -9.39 -41.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333444240.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.522 kcal (2) G-P(sol) polarization free energy of solvation -31.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds