Wall clock time and date at job start Wed Apr 1 2020 05:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 N 1.46499 * 109.47206 * 2 1 4 4 C 1.36345 * 125.63543 * 270.04195 * 3 2 1 5 5 C 1.34849 * 108.21636 * 179.68887 * 4 3 2 6 6 C 1.40894 * 107.41683 * 0.43479 * 5 4 3 7 7 C 1.50698 * 126.29114 * 179.83330 * 6 5 4 8 8 N 1.46499 * 109.47105 * 269.68684 * 7 6 5 9 9 C 1.46509 * 119.99685 * 270.00451 * 8 7 6 10 10 C 1.34776 * 120.00301 * 89.99379 * 8 7 6 11 11 O 1.21349 * 119.99908 * 3.50613 * 10 8 7 12 12 C 1.49452 * 119.99766 * 183.49737 * 10 8 7 13 13 O 1.21347 * 120.00694 * 6.23242 * 12 10 8 14 14 N 1.34785 * 119.99718 * 186.22815 * 12 10 8 15 15 C 1.46928 * 120.63026 * 355.42804 * 14 12 10 16 16 C 1.53191 * 108.77322 * 126.41206 * 15 14 12 17 17 C 1.53034 * 109.31263 * 54.63740 * 16 15 14 18 18 C 1.53045 * 109.53911 * 298.63390 * 17 16 15 19 19 H 1.09007 * 109.51948 * 301.39597 * 18 17 16 20 20 C 1.50697 * 109.50079 * 181.31828 * 18 17 16 21 21 H 1.08009 * 119.99802 * 0.15722 * 20 18 17 22 22 C 1.37869 * 120.00318 * 180.43626 * 20 18 17 23 23 N 1.31522 * 119.99740 * 359.72264 * 22 20 18 24 24 Si 1.86802 * 120.00393 * 179.72542 * 22 20 18 25 25 H 1.48495 * 109.47152 * 89.99787 * 24 22 20 26 26 H 1.48504 * 109.47165 * 209.99833 * 24 22 20 27 27 H 1.48500 * 109.46880 * 329.99613 * 24 22 20 28 28 C 1.46925 * 120.62728 * 175.45217 * 14 12 10 29 29 C 1.34852 * 107.41813 * 359.56366 * 6 5 4 30 30 H 1.08995 * 109.47097 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46772 * 300.00228 * 1 2 3 32 32 H 1.08995 * 109.46992 * 59.99767 * 1 2 3 33 33 H 1.09001 * 109.46772 * 239.99772 * 2 1 3 34 34 H 1.09001 * 109.46554 * 120.00272 * 2 1 3 35 35 H 1.07997 * 125.88755 * 359.96537 * 4 3 2 36 36 H 1.08001 * 126.29348 * 180.29254 * 5 4 3 37 37 H 1.08993 * 109.47425 * 149.68533 * 7 6 5 38 38 H 1.08997 * 109.47220 * 29.68013 * 7 6 5 39 39 H 1.08999 * 109.46546 * 263.78105 * 9 8 7 40 40 H 1.08993 * 109.47049 * 23.77566 * 9 8 7 41 41 H 1.08994 * 109.47194 * 143.78206 * 9 8 7 42 42 H 1.09002 * 109.58714 * 246.20387 * 15 14 12 43 43 H 1.09002 * 109.58645 * 6.62345 * 15 14 12 44 44 H 1.09001 * 109.49463 * 174.58454 * 16 15 14 45 45 H 1.09002 * 109.49938 * 294.68313 * 16 15 14 46 46 H 1.09004 * 109.46547 * 178.61202 * 17 16 15 47 47 H 1.09002 * 109.46194 * 58.64956 * 17 16 15 48 48 H 0.97008 * 119.99816 * 180.02562 * 23 22 20 49 49 H 1.08999 * 109.58506 * 113.80619 * 28 14 12 50 50 H 1.08993 * 109.70539 * 353.44133 * 28 14 12 51 51 H 1.07993 * 125.89008 * 180.24640 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.2825 2.1304 -1.1081 5 6 2.7051 3.3457 -0.7045 6 6 2.7115 3.3434 0.7045 7 6 3.1161 4.4887 1.5965 8 7 4.5497 4.4001 1.8849 9 6 5.0169 3.6473 3.0518 10 6 5.4388 5.0108 1.0768 11 8 5.0493 5.6866 0.1472 12 6 6.9042 4.8558 1.3258 13 8 7.2967 4.0918 2.1830 14 7 7.7901 5.5646 0.5980 15 6 7.3370 6.4174 -0.5093 16 6 7.8872 7.8316 -0.2995 17 6 9.4077 7.7645 -0.1393 18 6 9.7562 6.9231 1.0907 19 1 9.2974 7.3643 1.9756 20 6 11.2524 6.8844 1.2662 21 1 11.8914 7.4096 0.5716 22 6 11.8059 6.1739 2.3100 23 7 11.0279 5.5343 3.1558 24 14 13.6610 6.1196 2.5231 25 1 14.0931 7.2466 3.3881 26 1 14.0491 4.8332 3.1555 27 1 14.3153 6.2356 1.1952 28 6 9.2271 5.4986 0.8967 29 6 2.2833 2.1301 1.1081 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.1682 1.8078 -2.1324 36 1 2.9890 4.1687 -1.3436 37 1 2.5541 4.4390 2.5290 38 1 2.9043 5.4327 1.0944 39 1 5.1755 4.3313 3.8856 40 1 4.2686 2.9047 3.3285 41 1 5.9540 3.1463 2.8096 42 1 7.7070 6.0176 -1.4534 43 1 6.2475 6.4478 -0.5250 44 1 7.6393 8.4501 -1.1620 45 1 7.4456 8.2643 0.5982 46 1 9.8046 8.7719 -0.0145 47 1 9.8466 7.3089 -1.0270 48 1 11.4173 5.0346 3.8905 49 1 9.7513 5.0240 0.0672 50 1 9.3870 4.9222 1.8078 51 1 2.1700 1.8072 2.1324 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333444240.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:11 Heat of formation + Delta-G solvation = -5.343395 kcal Electronic energy + Delta-G solvation = -31398.423723 eV Core-core repulsion = 27299.345236 eV Total energy + Delta-G solvation = -4099.078487 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.25400 -41.79984 -39.73731 -38.62640 -36.97423 -35.20879 -34.89217 -33.43164 -31.59078 -31.30093 -29.86323 -28.13944 -28.04156 -27.04203 -26.11107 -24.19756 -23.59190 -23.20950 -21.37076 -21.01910 -20.41120 -20.05711 -18.60064 -18.16302 -17.84584 -17.73546 -17.18755 -16.88634 -16.44802 -15.94861 -15.62602 -15.50396 -15.35037 -15.24134 -14.82190 -14.60577 -14.45721 -14.32700 -14.29707 -14.02098 -13.83198 -13.64108 -13.47079 -13.40597 -13.16457 -13.02500 -12.90334 -12.86734 -12.72889 -12.40345 -12.28085 -12.21048 -12.07463 -12.05774 -11.70335 -11.30109 -11.05341 -10.92581 -10.53423 -10.03193 -9.68628 -9.46724 -9.37339 -8.99623 -8.11233 -6.27750 0.43364 1.20767 1.41602 1.42590 1.51964 1.53429 2.05842 2.12851 2.25989 2.42221 2.66091 3.15959 3.24203 3.85351 4.09637 4.14807 4.16682 4.19324 4.19715 4.31241 4.36120 4.41593 4.43323 4.45456 4.59679 4.64330 4.73788 4.76632 4.81169 4.82627 4.86960 4.92345 4.96939 5.04271 5.15220 5.20758 5.22877 5.25946 5.30595 5.31988 5.42476 5.52503 5.57138 5.67987 5.85181 5.94575 6.03035 6.07843 6.29902 6.33867 6.46868 6.57606 6.79135 6.85579 7.06819 7.41717 8.92824 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018706 B = 0.002441 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.483252 B =11466.105239 C =12138.863869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.095 3.905 3 N -0.447 5.447 4 C -0.022 4.022 5 C -0.207 4.207 6 C -0.211 4.211 7 C 0.185 3.815 8 N -0.569 5.569 9 C 0.058 3.942 10 C 0.515 3.485 11 O -0.521 6.521 12 C 0.485 3.515 13 O -0.547 6.547 14 N -0.575 5.575 15 C 0.046 3.954 16 C -0.121 4.121 17 C -0.106 4.106 18 C 0.040 3.960 19 H -0.010 1.010 20 C -0.536 4.536 21 H 0.062 0.938 22 C 0.011 3.989 23 N -0.914 5.914 24 Si 0.960 3.040 25 H -0.275 1.275 26 H -0.285 1.285 27 H -0.264 1.264 28 C 0.122 3.878 29 C 0.007 3.993 30 H 0.092 0.908 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.177 0.823 36 H 0.120 0.880 37 H 0.115 0.885 38 H 0.081 0.919 39 H 0.056 0.944 40 H 0.100 0.900 41 H 0.089 0.911 42 H 0.066 0.934 43 H 0.160 0.840 44 H 0.097 0.903 45 H 0.047 0.953 46 H 0.054 0.946 47 H 0.055 0.945 48 H 0.262 0.738 49 H 0.039 0.961 50 H 0.087 0.913 51 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.681 -10.217 -5.514 26.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.026 4.026 3 N -0.122 5.122 4 C -0.152 4.152 5 C -0.232 4.232 6 C -0.218 4.218 7 C 0.064 3.936 8 N -0.300 5.300 9 C -0.084 4.084 10 C 0.298 3.702 11 O -0.401 6.401 12 C 0.268 3.732 13 O -0.427 6.427 14 N -0.306 5.306 15 C -0.075 4.075 16 C -0.159 4.159 17 C -0.144 4.144 18 C 0.021 3.979 19 H 0.008 0.992 20 C -0.574 4.574 21 H 0.080 0.920 22 C -0.189 4.189 23 N -0.552 5.552 24 Si 0.785 3.215 25 H -0.201 1.201 26 H -0.211 1.211 27 H -0.189 1.189 28 C 0.000 4.000 29 C -0.125 4.125 30 H 0.110 0.890 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.194 0.806 36 H 0.138 0.862 37 H 0.133 0.867 38 H 0.100 0.900 39 H 0.074 0.926 40 H 0.118 0.882 41 H 0.107 0.893 42 H 0.084 0.916 43 H 0.175 0.825 44 H 0.115 0.885 45 H 0.065 0.935 46 H 0.073 0.927 47 H 0.073 0.927 48 H 0.071 0.929 49 H 0.057 0.943 50 H 0.105 0.895 51 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -23.818 -10.759 -5.389 26.685 hybrid contribution 1.513 0.063 0.324 1.549 sum -22.304 -10.696 -5.065 25.250 Atomic orbital electron populations 1.22123 0.93572 1.03871 1.02479 1.22094 0.96014 0.78885 1.05558 1.44395 1.49825 1.12502 1.05502 1.22050 1.08252 0.92243 0.92642 1.20960 1.08889 0.98202 0.95160 1.19781 1.10843 0.96854 0.94343 1.19975 0.77517 0.96694 0.99410 1.47940 1.06860 1.49114 1.26071 1.22515 1.02994 0.96724 0.86148 1.19988 0.86780 0.80405 0.83022 1.90171 1.78997 1.40032 1.30894 1.20545 0.88232 0.81941 0.82459 1.90576 1.80373 1.37560 1.34174 1.48504 1.07756 1.42581 1.31766 1.23430 1.06784 0.89663 0.87582 1.21855 0.95521 0.96493 1.02074 1.21558 0.95300 0.99509 0.98049 1.18898 0.94742 0.91116 0.93182 0.99227 1.21474 0.92270 1.31681 1.11969 0.92011 1.25887 1.02713 0.94878 0.95389 1.70055 1.36431 1.32899 1.15857 0.85529 0.80092 0.77353 0.78535 1.20076 1.21066 1.18873 1.21923 0.76191 1.01214 1.00657 1.21975 1.06395 0.91471 0.92677 0.88955 0.92405 0.92722 0.88279 0.87960 0.80559 0.86169 0.86735 0.90043 0.92565 0.88183 0.89253 0.91609 0.82450 0.88471 0.93457 0.92749 0.92652 0.92909 0.94260 0.89459 0.79868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.10 10.24 71.99 0.74 -0.36 16 2 C 0.09 0.83 6.81 86.38 0.59 1.41 16 3 N -0.45 -7.31 2.75 -524.47 -1.44 -8.75 16 4 C -0.02 -0.44 11.43 83.21 0.95 0.51 16 5 C -0.21 -5.16 10.81 22.14 0.24 -4.92 16 6 C -0.21 -4.81 5.72 -19.99 -0.11 -4.92 16 7 C 0.18 4.18 5.90 85.63 0.51 4.68 16 8 N -0.57 -16.41 2.86 -852.74 -2.44 -18.85 16 9 C 0.06 1.53 9.76 127.77 1.25 2.78 16 10 C 0.51 18.55 7.66 87.27 0.67 19.22 16 11 O -0.52 -18.80 12.57 -3.24 -0.04 -18.84 16 12 C 0.48 21.12 7.65 87.27 0.67 21.79 16 13 O -0.55 -26.20 12.53 -3.24 -0.04 -26.24 16 14 N -0.57 -25.70 2.97 -820.47 -2.44 -28.13 16 15 C 0.05 1.69 6.27 86.36 0.54 2.24 16 16 C -0.12 -4.36 6.08 30.67 0.19 -4.17 16 17 C -0.11 -4.50 5.11 30.62 0.16 -4.34 16 18 C 0.04 2.09 2.25 -11.46 -0.03 2.07 16 19 H -0.01 -0.62 8.14 -2.38 -0.02 -0.64 16 20 C -0.54 -30.05 8.57 25.60 0.22 -29.83 16 21 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 22 C 0.01 0.61 5.30 84.65 0.45 1.06 16 23 N -0.91 -55.04 11.38 21.45 0.24 -54.80 16 24 Si 0.96 44.42 29.54 68.60 2.03 46.44 16 25 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 26 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 27 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 28 C 0.12 6.33 5.38 86.36 0.46 6.79 16 29 C 0.01 0.13 11.35 83.21 0.94 1.07 16 30 H 0.09 0.28 8.14 -2.39 -0.02 0.27 16 31 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.05 0.47 8.14 -2.39 -0.02 0.46 16 33 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.18 2.58 8.06 -2.91 -0.02 2.56 16 36 H 0.12 3.28 8.06 -2.91 -0.02 3.26 16 37 H 0.11 1.81 8.07 -2.39 -0.02 1.79 16 38 H 0.08 2.02 7.38 -2.39 -0.02 2.00 16 39 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.10 1.81 8.02 -2.39 -0.02 1.79 16 41 H 0.09 3.03 5.04 -11.86 -0.06 2.97 16 42 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.16 5.70 3.71 -85.68 -0.32 5.39 16 44 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 45 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 46 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 47 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 48 H 0.26 15.08 8.31 -92.70 -0.77 14.31 16 49 H 0.04 2.03 8.14 -2.39 -0.02 2.02 16 50 H 0.09 5.21 5.14 -2.39 -0.01 5.20 16 51 H 0.18 2.16 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -72.79 405.63 4.86 -67.93 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: 0.56 Total: 26.17 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: 8.43 Total: 15.07 kcal Atomic # 7 Polarization: -104.46 SS G_CDS: -6.07 Total: -110.53 kcal Atomic # 8 Polarization: -45.00 SS G_CDS: -0.08 Total: -45.08 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -72.79 4.86 -67.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333444240.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.588 kcal (2) G-P(sol) polarization free energy of solvation -72.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds