Wall clock time and date at job start Wed Apr 1 2020 06:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.47313 * 2 1 4 4 C 1.34777 * 119.99914 * 270.00140 * 3 2 1 5 5 O 1.21292 * 119.99791 * 184.82738 * 4 3 2 6 6 C 1.50695 * 120.00262 * 4.82594 * 4 3 2 7 7 N 1.46495 * 109.47555 * 179.97438 * 6 4 3 8 8 C 1.34769 * 120.00299 * 179.97438 * 7 6 4 9 9 O 1.21283 * 120.00045 * 0.02562 * 8 7 6 10 10 C 1.50704 * 120.00069 * 180.02562 * 8 7 6 11 11 H 1.09000 * 109.47119 * 319.99978 * 10 8 7 12 12 N 1.46896 * 109.47171 * 200.00093 * 10 8 7 13 13 C 1.52997 * 109.47188 * 79.99918 * 10 8 7 14 14 C 1.53000 * 109.46928 * 184.99746 * 13 10 8 15 15 C 1.53006 * 109.46773 * 180.02562 * 14 13 10 16 16 C 1.50700 * 109.46958 * 180.02562 * 15 14 13 17 17 H 1.08004 * 120.00433 * 359.97438 * 16 15 14 18 18 C 1.37881 * 120.00066 * 180.02562 * 16 15 14 19 19 N 1.31508 * 119.99653 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00054 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47211 * 59.99600 * 20 18 16 22 22 H 1.48493 * 109.47158 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47046 * 299.99911 * 20 18 16 24 24 C 1.39929 * 119.99863 * 90.00027 * 3 2 1 25 25 C 1.38874 * 120.06840 * 247.68124 * 24 3 2 26 26 C 1.38109 * 119.92971 * 179.97438 * 25 24 3 27 27 C 1.38287 * 120.06886 * 359.97438 * 26 25 24 28 28 C 1.38279 * 120.14380 * 0.03468 * 27 26 25 29 29 C 1.38119 * 120.06560 * 359.96223 * 28 27 26 30 30 H 1.08996 * 109.47065 * 59.99624 * 1 2 3 31 31 H 1.08994 * 109.46829 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47054 * 299.99909 * 1 2 3 33 33 H 1.08994 * 109.47177 * 239.99816 * 2 1 3 34 34 H 1.09001 * 109.47164 * 119.99649 * 2 1 3 35 35 H 1.08999 * 109.47279 * 300.00614 * 6 4 3 36 36 H 1.09000 * 109.46739 * 59.99911 * 6 4 3 37 37 H 0.97003 * 119.99400 * 0.02562 * 7 6 4 38 38 H 1.00901 * 111.00256 * 299.99647 * 12 10 8 39 39 H 1.00903 * 110.99949 * 63.95133 * 12 10 8 40 40 H 1.08998 * 109.47022 * 305.00063 * 13 10 8 41 41 H 1.09004 * 109.46811 * 65.00132 * 13 10 8 42 42 H 1.08998 * 109.47528 * 300.00007 * 14 13 10 43 43 H 1.09004 * 109.47060 * 60.00538 * 14 13 10 44 44 H 1.08998 * 109.47073 * 300.00254 * 15 14 13 45 45 H 1.08996 * 109.47245 * 60.00518 * 15 14 13 46 46 H 0.97006 * 120.00056 * 180.02562 * 19 18 16 47 47 H 1.08003 * 120.03637 * 359.70712 * 25 24 3 48 48 H 1.07997 * 119.96763 * 179.97438 * 26 25 24 49 49 H 1.07998 * 119.92900 * 179.97438 * 27 26 25 50 50 H 1.07996 * 119.97116 * 179.97438 * 28 27 26 51 51 H 1.08000 * 120.03192 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2430 2.0165 -1.1672 5 8 2.7296 3.1276 -1.1690 6 6 1.8896 1.3466 -2.4700 7 7 2.2273 2.2360 -3.5839 8 6 1.9977 1.8441 -4.8528 9 8 1.5111 0.7551 -5.0724 10 6 2.3457 2.7589 -5.9987 11 1 2.0848 3.7843 -5.7371 12 7 1.5957 2.3527 -7.1947 13 6 3.8463 2.6713 -6.2837 14 6 4.2210 3.6901 -7.3619 15 6 5.7216 3.6021 -7.6473 16 6 6.0907 4.6060 -8.7089 17 1 5.3310 5.2428 -9.1375 18 6 7.3982 4.7108 -9.1338 19 7 8.3232 3.9350 -8.6122 20 14 7.8557 5.9547 -10.4502 21 1 7.5215 7.3220 -9.9768 22 1 9.3121 5.8694 -10.7271 23 1 7.0970 5.6620 -11.6928 24 6 2.2516 2.0408 1.2118 25 6 1.4511 3.1121 1.5862 26 6 1.6836 3.7607 2.7832 27 6 2.7117 3.3441 3.6088 28 6 3.5107 2.2778 3.2388 29 6 3.2834 1.6250 2.0431 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.4504 0.4167 -2.5642 36 1 0.8215 1.1303 -2.4892 37 1 2.6169 3.1069 -3.4083 38 1 1.8202 1.4048 -7.4578 39 1 0.6027 2.4632 -7.0536 40 1 4.4025 2.8866 -5.3713 41 1 4.0922 1.6677 -6.6309 42 1 3.6648 3.4748 -8.2742 43 1 3.9751 4.6937 -7.0147 44 1 6.2781 3.8171 -6.7351 45 1 5.9671 2.5986 -7.9947 46 1 9.2432 4.0090 -8.9109 47 1 0.6504 3.4404 0.9401 48 1 1.0617 4.5942 3.0748 49 1 2.8917 3.8532 4.5441 50 1 4.3132 1.9551 3.8855 51 1 3.9080 0.7926 1.7544 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342464990.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:21:32 Heat of formation + Delta-G solvation = -55.848199 kcal Electronic energy + Delta-G solvation = -29683.585157 eV Core-core repulsion = 25582.316617 eV Total energy + Delta-G solvation = -4101.268540 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.22075 -39.95939 -38.84380 -36.54165 -35.76315 -34.72559 -33.30078 -31.94018 -31.36819 -31.31348 -30.10104 -28.60201 -27.45118 -24.90129 -24.18276 -23.17782 -22.76114 -22.14119 -20.42099 -19.98053 -19.92436 -18.05890 -17.78212 -16.84115 -16.66959 -16.38892 -16.25958 -16.10741 -15.62298 -15.36424 -14.91565 -14.53764 -14.44013 -14.36358 -14.24749 -14.04518 -13.84563 -13.57989 -13.34371 -13.12688 -12.95828 -12.81101 -12.52675 -12.33717 -11.95208 -11.74979 -11.71728 -11.64341 -11.44556 -11.10188 -10.69542 -10.63298 -10.44475 -10.38585 -10.25265 -9.86144 -9.56319 -9.37959 -9.36099 -9.17702 -9.01193 -8.88334 -8.58242 -8.25143 -5.91006 -3.92457 0.81388 0.97470 2.02873 2.19767 2.50727 3.07607 3.31230 3.39820 3.43444 3.46614 3.94871 4.28866 4.47006 4.53123 4.53802 4.58745 4.59903 4.69879 4.74836 4.79212 4.91329 4.96728 4.99748 5.02519 5.14193 5.21119 5.23324 5.30718 5.44034 5.44937 5.57193 5.62188 5.87846 5.97312 5.99024 6.08138 6.09240 6.13030 6.16240 6.49351 6.57029 6.70435 6.86923 7.05090 7.09770 7.29250 7.35396 7.53066 7.58090 7.79239 7.95402 8.04443 8.10818 8.54074 9.14960 9.70897 11.20451 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012214 B = 0.001925 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.894310 B =14539.657748 C =16082.682948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.101 3.899 3 N -0.571 5.571 4 C 0.513 3.487 5 O -0.513 6.513 6 C 0.102 3.898 7 N -0.719 5.719 8 C 0.487 3.513 9 O -0.551 6.551 10 C 0.080 3.920 11 H 0.103 0.897 12 N -0.810 5.810 13 C -0.104 4.104 14 C -0.100 4.100 15 C 0.019 3.981 16 C -0.516 4.516 17 H 0.055 0.945 18 C 0.054 3.946 19 N -0.898 5.898 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 C 0.142 3.858 25 C -0.107 4.107 26 C -0.109 4.109 27 C -0.120 4.120 28 C -0.109 4.109 29 C -0.119 4.119 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.415 0.585 38 H 0.350 0.650 39 H 0.338 0.662 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.045 0.955 44 H 0.012 0.988 45 H 0.014 0.986 46 H 0.260 0.740 47 H 0.121 0.879 48 H 0.126 0.874 49 H 0.125 0.875 50 H 0.127 0.873 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.247 -8.482 27.129 33.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.021 4.021 3 N -0.301 5.301 4 C 0.301 3.699 5 O -0.387 6.387 6 C -0.026 4.026 7 N -0.376 5.376 8 C 0.273 3.727 9 O -0.429 6.429 10 C -0.036 4.036 11 H 0.120 0.880 12 N -0.338 5.338 13 C -0.142 4.142 14 C -0.138 4.138 15 C -0.018 4.018 16 C -0.554 4.554 17 H 0.073 0.927 18 C -0.146 4.146 19 N -0.538 5.538 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.203 1.203 24 C 0.052 3.948 25 C -0.127 4.127 26 C -0.127 4.127 27 C -0.138 4.138 28 C -0.128 4.128 29 C -0.139 4.139 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.253 0.747 38 H 0.164 0.836 39 H 0.150 0.850 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.064 0.936 44 H 0.031 0.969 45 H 0.032 0.968 46 H 0.069 0.931 47 H 0.139 0.861 48 H 0.144 0.856 49 H 0.143 0.857 50 H 0.145 0.855 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -17.750 -8.122 26.518 32.928 hybrid contribution 0.097 0.178 0.193 0.280 sum -17.652 -7.944 26.711 32.988 Atomic orbital electron populations 1.22231 0.95047 1.03049 1.02872 1.21811 0.95177 0.80845 1.04266 1.45474 1.66192 1.14726 1.03747 1.20744 0.77781 0.86187 0.85201 1.90770 1.41827 1.19456 1.86648 1.21102 1.02795 0.94570 0.84134 1.45965 1.65366 1.21435 1.04816 1.22647 0.76863 0.88731 0.84488 1.90665 1.44659 1.22688 1.84882 1.21764 0.98007 0.97769 0.86043 0.87960 1.59043 1.10888 1.31570 1.32299 1.21666 0.89574 1.01996 1.01007 1.21541 0.99806 0.95769 0.96649 1.19120 0.89291 0.96958 0.96417 1.21248 0.93413 1.19619 1.21162 0.92701 1.25037 0.96722 0.96090 0.96786 1.69960 1.01520 1.39111 1.43163 0.86669 0.77148 0.81904 0.82328 1.20298 1.21417 1.20256 1.17518 0.95635 0.95133 0.86498 1.21223 0.98959 0.95831 0.96638 1.21064 0.98101 0.99569 0.94013 1.21230 0.95603 0.96997 0.99936 1.21051 0.99539 0.95974 0.96225 1.21225 0.96302 1.01232 0.95114 0.92088 0.90721 0.91946 0.89350 0.89472 0.88296 0.88283 0.74703 0.83552 0.85011 0.91795 0.91888 0.91812 0.93605 0.96934 0.96791 0.93087 0.86059 0.85554 0.85705 0.85490 0.85699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.77 10.23 37.16 0.38 -0.39 16 2 C 0.10 0.51 5.85 -4.04 -0.02 0.48 16 3 N -0.57 -4.69 2.52 -113.46 -0.29 -4.98 16 4 C 0.51 5.39 7.59 -10.99 -0.08 5.31 16 5 O -0.51 -7.26 15.42 5.55 0.09 -7.17 16 6 C 0.10 0.98 4.82 -5.20 -0.03 0.96 16 7 N -0.72 -8.49 5.53 -61.48 -0.34 -8.83 16 8 C 0.49 6.63 7.07 -10.99 -0.08 6.55 16 9 O -0.55 -8.66 16.25 5.56 0.09 -8.57 16 10 C 0.08 1.12 3.15 -68.87 -0.22 0.90 16 11 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 12 N -0.81 -11.09 8.44 -5.66 -0.05 -11.13 16 13 C -0.10 -1.78 4.84 -26.73 -0.13 -1.91 16 14 C -0.10 -2.09 5.04 -26.73 -0.13 -2.23 16 15 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 16 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 17 H 0.05 1.55 7.74 -52.48 -0.41 1.15 16 18 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.90 -27.72 13.29 55.43 0.74 -26.99 16 20 Si 0.89 22.26 29.54 -169.99 -5.02 17.24 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 24 C 0.14 1.28 4.76 -83.69 -0.40 0.88 16 25 C -0.11 -0.94 9.54 -39.39 -0.38 -1.32 16 26 C -0.11 -0.81 10.04 -39.61 -0.40 -1.21 16 27 C -0.12 -0.81 10.04 -39.55 -0.40 -1.21 16 28 C -0.11 -0.76 10.04 -39.61 -0.40 -1.16 16 29 C -0.12 -0.95 9.68 -39.39 -0.38 -1.34 16 30 H 0.06 0.31 6.95 -51.93 -0.36 -0.05 16 31 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.09 0.37 6.47 -51.93 -0.34 0.03 16 34 H 0.09 0.34 7.85 -51.93 -0.41 -0.07 16 35 H 0.10 0.89 7.26 -51.93 -0.38 0.51 16 36 H 0.10 0.83 6.95 -51.93 -0.36 0.47 16 37 H 0.41 4.96 7.44 -40.82 -0.30 4.65 16 38 H 0.35 4.93 8.58 -39.29 -0.34 4.59 16 39 H 0.34 3.96 9.06 -39.29 -0.36 3.61 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.06 1.36 7.75 -51.93 -0.40 0.96 16 43 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 44 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 47 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 48 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 49 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 50 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 51 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 LS Contribution 424.32 15.07 6.39 6.39 Total: -1.00 -35.72 424.32 -9.88 -45.59 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -8.28 Total: 7.60 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -3.21 Total: -9.15 kcal Atomic # 7 Polarization: -51.99 SS G_CDS: 0.06 Total: -51.93 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: 0.18 Total: -15.74 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -35.72 -9.88 -45.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342464990.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.255 kcal (2) G-P(sol) polarization free energy of solvation -35.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds