Wall clock time and date at job start Wed Apr 1 2020 06:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.47313 * 2 1 4 4 C 1.34777 * 119.99914 * 270.00140 * 3 2 1 5 5 O 1.21292 * 119.99791 * 184.82738 * 4 3 2 6 6 C 1.50695 * 120.00262 * 4.82594 * 4 3 2 7 7 N 1.46495 * 109.47555 * 179.97438 * 6 4 3 8 8 C 1.34769 * 120.00299 * 179.97438 * 7 6 4 9 9 O 1.21283 * 120.00045 * 0.02562 * 8 7 6 10 10 C 1.50704 * 120.00069 * 180.02562 * 8 7 6 11 11 H 1.09000 * 109.47119 * 319.99978 * 10 8 7 12 12 N 1.46896 * 109.47171 * 200.00093 * 10 8 7 13 13 C 1.52997 * 109.47188 * 79.99918 * 10 8 7 14 14 C 1.53000 * 109.46928 * 184.99746 * 13 10 8 15 15 C 1.53006 * 109.46773 * 180.02562 * 14 13 10 16 16 C 1.50700 * 109.46958 * 180.02562 * 15 14 13 17 17 H 1.08004 * 120.00433 * 359.97438 * 16 15 14 18 18 C 1.37881 * 120.00066 * 180.02562 * 16 15 14 19 19 N 1.31508 * 119.99653 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00054 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47211 * 59.99600 * 20 18 16 22 22 H 1.48493 * 109.47158 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47046 * 299.99911 * 20 18 16 24 24 C 1.39929 * 119.99863 * 90.00027 * 3 2 1 25 25 C 1.38874 * 120.06840 * 247.68124 * 24 3 2 26 26 C 1.38109 * 119.92971 * 179.97438 * 25 24 3 27 27 C 1.38287 * 120.06886 * 359.97438 * 26 25 24 28 28 C 1.38279 * 120.14380 * 0.03468 * 27 26 25 29 29 C 1.38119 * 120.06560 * 359.96223 * 28 27 26 30 30 H 1.08996 * 109.47065 * 59.99624 * 1 2 3 31 31 H 1.08994 * 109.46829 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47054 * 299.99909 * 1 2 3 33 33 H 1.08994 * 109.47177 * 239.99816 * 2 1 3 34 34 H 1.09001 * 109.47164 * 119.99649 * 2 1 3 35 35 H 1.08999 * 109.47279 * 300.00614 * 6 4 3 36 36 H 1.09000 * 109.46739 * 59.99911 * 6 4 3 37 37 H 0.97003 * 119.99400 * 0.02562 * 7 6 4 38 38 H 1.00901 * 111.00256 * 299.99647 * 12 10 8 39 39 H 1.00903 * 110.99949 * 63.95133 * 12 10 8 40 40 H 1.08998 * 109.47022 * 305.00063 * 13 10 8 41 41 H 1.09004 * 109.46811 * 65.00132 * 13 10 8 42 42 H 1.08998 * 109.47528 * 300.00007 * 14 13 10 43 43 H 1.09004 * 109.47060 * 60.00538 * 14 13 10 44 44 H 1.08998 * 109.47073 * 300.00254 * 15 14 13 45 45 H 1.08996 * 109.47245 * 60.00518 * 15 14 13 46 46 H 0.97006 * 120.00056 * 180.02562 * 19 18 16 47 47 H 1.08003 * 120.03637 * 359.70712 * 25 24 3 48 48 H 1.07997 * 119.96763 * 179.97438 * 26 25 24 49 49 H 1.07998 * 119.92900 * 179.97438 * 27 26 25 50 50 H 1.07996 * 119.97116 * 179.97438 * 28 27 26 51 51 H 1.08000 * 120.03192 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2430 2.0165 -1.1672 5 8 2.7296 3.1276 -1.1690 6 6 1.8896 1.3466 -2.4700 7 7 2.2273 2.2360 -3.5839 8 6 1.9977 1.8441 -4.8528 9 8 1.5111 0.7551 -5.0724 10 6 2.3457 2.7589 -5.9987 11 1 2.0848 3.7843 -5.7371 12 7 1.5957 2.3527 -7.1947 13 6 3.8463 2.6713 -6.2837 14 6 4.2210 3.6901 -7.3619 15 6 5.7216 3.6021 -7.6473 16 6 6.0907 4.6060 -8.7089 17 1 5.3310 5.2428 -9.1375 18 6 7.3982 4.7108 -9.1338 19 7 8.3232 3.9350 -8.6122 20 14 7.8557 5.9547 -10.4502 21 1 7.5215 7.3220 -9.9768 22 1 9.3121 5.8694 -10.7271 23 1 7.0970 5.6620 -11.6928 24 6 2.2516 2.0408 1.2118 25 6 1.4511 3.1121 1.5862 26 6 1.6836 3.7607 2.7832 27 6 2.7117 3.3441 3.6088 28 6 3.5107 2.2778 3.2388 29 6 3.2834 1.6250 2.0431 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.4504 0.4167 -2.5642 36 1 0.8215 1.1303 -2.4892 37 1 2.6169 3.1069 -3.4083 38 1 1.8202 1.4048 -7.4578 39 1 0.6027 2.4632 -7.0536 40 1 4.4025 2.8866 -5.3713 41 1 4.0922 1.6677 -6.6309 42 1 3.6648 3.4748 -8.2742 43 1 3.9751 4.6937 -7.0147 44 1 6.2781 3.8171 -6.7351 45 1 5.9671 2.5986 -7.9947 46 1 9.2432 4.0090 -8.9109 47 1 0.6504 3.4404 0.9401 48 1 1.0617 4.5942 3.0748 49 1 2.8917 3.8532 4.5441 50 1 4.3132 1.9551 3.8855 51 1 3.9080 0.7926 1.7544 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342464990.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:21:31 Heat of formation + Delta-G solvation = -79.963048 kcal Electronic energy + Delta-G solvation = -29684.630855 eV Core-core repulsion = 25582.316617 eV Total energy + Delta-G solvation = -4102.314238 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.96971 -40.96753 -39.55011 -37.21848 -37.16728 -35.72544 -35.23505 -33.12660 -32.44986 -31.92644 -30.79467 -29.75076 -28.80291 -26.46611 -24.71415 -24.28140 -23.47354 -23.19857 -21.78109 -21.40178 -20.64660 -18.89166 -18.57030 -18.43316 -17.65545 -17.51158 -17.18080 -16.95670 -16.70171 -16.46899 -16.18116 -15.79234 -15.49389 -15.24145 -15.08660 -14.86072 -14.59770 -14.39838 -14.36253 -14.24645 -13.95835 -13.71124 -13.64537 -13.57350 -13.09477 -12.97354 -12.83391 -12.48056 -12.44424 -12.40703 -12.18683 -12.18423 -12.14447 -11.57589 -11.39047 -11.26604 -11.24535 -10.97478 -10.51423 -10.48610 -10.33693 -9.93676 -9.72896 -9.48796 -8.16690 -6.27268 0.22455 0.40087 1.23920 1.40108 1.41528 1.44803 1.50340 1.52524 2.17669 2.43732 2.73816 3.16044 3.22138 3.49443 3.73878 3.87993 3.94666 3.96966 3.99919 4.08463 4.15662 4.18387 4.22425 4.24068 4.41514 4.48551 4.49940 4.52208 4.60199 4.67176 4.84242 4.89339 4.92680 5.03439 5.09926 5.14401 5.26305 5.27266 5.34402 5.35012 5.42143 5.54179 5.54487 5.60602 5.84305 5.93502 5.97125 6.02437 6.06339 6.30593 6.31523 6.50394 6.82798 6.90180 6.99406 7.41483 8.95015 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012214 B = 0.001925 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.894310 B =14539.657748 C =16082.682948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.094 3.906 3 N -0.562 5.562 4 C 0.513 3.487 5 O -0.557 6.557 6 C 0.103 3.897 7 N -0.715 5.715 8 C 0.493 3.507 9 O -0.571 6.571 10 C 0.088 3.912 11 H 0.119 0.881 12 N -0.815 5.815 13 C -0.095 4.095 14 C -0.084 4.084 15 C 0.021 3.979 16 C -0.540 4.540 17 H 0.060 0.940 18 C -0.005 4.005 19 N -0.936 5.936 20 Si 0.965 3.035 21 H -0.266 1.266 22 H -0.284 1.284 23 H -0.267 1.267 24 C 0.122 3.878 25 C -0.126 4.126 26 C -0.116 4.116 27 C -0.122 4.122 28 C -0.113 4.113 29 C -0.131 4.131 30 H 0.053 0.947 31 H 0.091 0.909 32 H 0.054 0.946 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.110 0.890 36 H 0.116 0.884 37 H 0.415 0.585 38 H 0.348 0.652 39 H 0.351 0.649 40 H 0.066 0.934 41 H 0.052 0.948 42 H 0.060 0.940 43 H 0.052 0.948 44 H -0.011 1.011 45 H -0.014 1.014 46 H 0.262 0.738 47 H 0.114 0.886 48 H 0.143 0.857 49 H 0.149 0.851 50 H 0.149 0.851 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.144 -8.250 27.908 34.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.026 4.026 3 N -0.291 5.291 4 C 0.302 3.698 5 O -0.435 6.435 6 C -0.024 4.024 7 N -0.370 5.370 8 C 0.278 3.722 9 O -0.451 6.451 10 C -0.028 4.028 11 H 0.136 0.864 12 N -0.345 5.345 13 C -0.133 4.133 14 C -0.122 4.122 15 C -0.016 4.016 16 C -0.578 4.578 17 H 0.079 0.921 18 C -0.202 4.202 19 N -0.576 5.576 20 Si 0.790 3.210 21 H -0.191 1.191 22 H -0.209 1.209 23 H -0.192 1.192 24 C 0.032 3.968 25 C -0.145 4.145 26 C -0.134 4.134 27 C -0.140 4.140 28 C -0.131 4.131 29 C -0.150 4.150 30 H 0.072 0.928 31 H 0.110 0.890 32 H 0.074 0.926 33 H 0.118 0.882 34 H 0.120 0.880 35 H 0.128 0.872 36 H 0.133 0.867 37 H 0.253 0.747 38 H 0.162 0.838 39 H 0.164 0.836 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.007 0.993 45 H 0.005 0.995 46 H 0.071 0.929 47 H 0.132 0.868 48 H 0.161 0.839 49 H 0.167 0.833 50 H 0.167 0.833 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -18.686 -7.912 27.338 34.046 hybrid contribution 0.380 0.066 0.060 0.390 sum -18.306 -7.846 27.398 33.873 Atomic orbital electron populations 1.22189 0.94415 1.03934 1.02171 1.22078 0.95683 0.79290 1.05567 1.45534 1.65034 1.15555 1.02998 1.20868 0.77290 0.85678 0.85982 1.90745 1.44162 1.21295 1.87261 1.21240 1.03892 0.94240 0.83006 1.45932 1.64455 1.21668 1.04906 1.22381 0.76798 0.88158 0.84824 1.90660 1.45872 1.23351 1.85199 1.21579 0.95703 0.98924 0.86564 0.86360 1.59025 1.11871 1.31443 1.32116 1.21461 0.92172 1.00037 0.99673 1.21289 0.95650 0.97376 0.97876 1.19054 0.92911 0.94866 0.94739 1.21709 0.93983 1.20235 1.21883 0.92141 1.26022 0.96678 0.98221 0.99273 1.70101 1.01963 1.40837 1.44718 0.85498 0.76965 0.79312 0.79260 1.19098 1.20910 1.19162 1.17750 0.96427 0.95748 0.86910 1.21324 0.99354 0.96414 0.97440 1.21342 0.98589 0.99882 0.93622 1.21571 0.94965 0.96855 1.00641 1.21389 0.99939 0.95703 0.96069 1.21423 0.96232 1.01817 0.95547 0.92768 0.88997 0.92646 0.88204 0.88044 0.87246 0.86677 0.74698 0.83815 0.83567 0.91563 0.92950 0.92119 0.92908 0.99304 0.99516 0.92888 0.86791 0.83923 0.83320 0.83297 0.84834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 10.23 71.98 0.74 -0.55 16 2 C 0.09 0.83 5.85 86.38 0.50 1.34 16 3 N -0.56 -9.00 2.52 -631.25 -1.59 -10.59 16 4 C 0.51 10.71 7.59 87.66 0.67 11.37 16 5 O -0.56 -16.07 15.42 -3.07 -0.05 -16.11 16 6 C 0.10 1.90 4.82 85.63 0.41 2.31 16 7 N -0.71 -16.32 5.53 -466.81 -2.58 -18.90 16 8 C 0.49 12.90 7.07 87.66 0.62 13.51 16 9 O -0.57 -17.26 16.25 -3.04 -0.05 -17.31 16 10 C 0.09 2.37 3.15 44.17 0.14 2.51 16 11 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 12 N -0.82 -21.39 8.44 -171.81 -1.45 -22.84 16 13 C -0.10 -3.24 4.84 30.59 0.15 -3.09 16 14 C -0.08 -3.54 5.04 30.60 0.15 -3.38 16 15 C 0.02 1.17 4.97 29.85 0.15 1.32 16 16 C -0.54 -31.81 9.11 25.60 0.23 -31.57 16 17 H 0.06 3.41 7.74 -2.91 -0.02 3.38 16 18 C 0.00 -0.28 5.46 84.66 0.46 0.18 16 19 N -0.94 -58.74 13.29 21.45 0.28 -58.45 16 20 Si 0.97 45.58 29.54 68.60 2.03 47.60 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 22 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 23 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 24 C 0.12 2.17 4.76 38.15 0.18 2.35 16 25 C -0.13 -2.24 9.54 22.39 0.21 -2.03 16 26 C -0.12 -1.64 10.04 22.25 0.22 -1.42 16 27 C -0.12 -1.47 10.04 22.29 0.22 -1.25 16 28 C -0.11 -1.40 10.04 22.25 0.22 -1.18 16 29 C -0.13 -1.99 9.68 22.39 0.22 -1.78 16 30 H 0.05 0.49 6.95 -2.39 -0.02 0.48 16 31 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.10 0.66 6.47 -2.39 -0.02 0.65 16 34 H 0.10 0.63 7.85 -2.39 -0.02 0.61 16 35 H 0.11 1.82 7.26 -2.39 -0.02 1.80 16 36 H 0.12 1.78 6.95 -2.39 -0.02 1.76 16 37 H 0.41 9.75 7.44 -92.71 -0.69 9.06 16 38 H 0.35 9.52 8.58 -89.69 -0.77 8.75 16 39 H 0.35 7.69 9.06 -89.69 -0.81 6.87 16 40 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 42 H 0.06 2.58 7.75 -2.39 -0.02 2.56 16 43 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 44 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 45 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 46 H 0.26 15.48 8.31 -92.70 -0.77 14.71 16 47 H 0.11 2.08 8.06 -2.91 -0.02 2.06 16 48 H 0.14 1.42 8.06 -2.91 -0.02 1.39 16 49 H 0.15 1.00 8.06 -2.91 -0.02 0.98 16 50 H 0.15 1.11 8.06 -2.91 -0.02 1.09 16 51 H 0.13 1.68 8.06 -2.91 -0.02 1.66 16 Total: -1.00 -77.64 424.32 0.78 -76.86 By element: Atomic # 1 Polarization: 32.41 SS G_CDS: -1.32 Total: 31.09 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: 5.51 Total: -11.36 kcal Atomic # 7 Polarization: -105.44 SS G_CDS: -5.34 Total: -110.78 kcal Atomic # 8 Polarization: -33.33 SS G_CDS: -0.10 Total: -33.42 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal Total: -77.64 0.78 -76.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342464990.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.099 kcal (2) G-P(sol) polarization free energy of solvation -77.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds