Wall clock time and date at job start Wed Apr 1 2020 04:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47595 * 2 1 4 4 C 1.53007 * 109.47027 * 239.99634 * 2 1 3 5 5 N 1.46498 * 109.46968 * 65.00422 * 4 2 1 6 6 C 1.34777 * 119.99843 * 180.02562 * 5 4 2 7 7 O 1.21349 * 120.00051 * 359.97438 * 6 5 4 8 8 C 1.49358 * 119.99693 * 179.97438 * 6 5 4 9 9 O 1.21378 * 120.00057 * 0.02562 * 8 6 5 10 10 N 1.34777 * 119.99693 * 179.97438 * 8 6 5 11 11 C 1.39719 * 119.99664 * 175.38526 * 10 8 6 12 12 C 1.38933 * 120.07482 * 214.81520 * 11 10 8 13 13 C 1.38095 * 119.92494 * 179.76493 * 12 11 10 14 14 C 1.38292 * 120.07447 * 0.49379 * 13 12 11 15 15 C 1.50705 * 119.92371 * 179.76394 * 14 13 12 16 16 C 1.50709 * 109.47004 * 270.02203 * 15 14 13 17 17 H 1.08002 * 119.99779 * 359.97438 * 16 15 14 18 18 C 1.37869 * 119.99581 * 179.97438 * 16 15 14 19 19 N 1.31508 * 120.00482 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99645 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47175 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47279 * 119.99872 * 20 18 16 23 23 H 1.48502 * 109.47047 * 239.99752 * 20 18 16 24 24 C 1.38291 * 120.15427 * 359.78595 * 14 13 12 25 25 C 1.38092 * 120.07362 * 359.95391 * 24 14 13 26 26 C 1.53003 * 109.47055 * 119.99863 * 2 1 3 27 27 N 1.46895 * 109.47316 * 294.99621 * 26 2 1 28 28 C 1.46894 * 111.00178 * 169.99787 * 27 26 2 29 29 C 1.46897 * 111.00239 * 293.95481 * 27 26 2 30 30 H 1.09002 * 109.46687 * 59.99886 * 1 2 3 31 31 H 1.08994 * 109.47098 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46687 * 300.00472 * 1 2 3 33 33 H 1.08995 * 109.46984 * 185.00142 * 4 2 1 34 34 H 1.08998 * 109.47058 * 305.00082 * 4 2 1 35 35 H 0.97004 * 119.99929 * 359.97438 * 5 4 2 36 36 H 0.96997 * 119.99914 * 355.37580 * 10 8 6 37 37 H 1.07999 * 120.03478 * 0.02562 * 12 11 10 38 38 H 1.08000 * 119.96163 * 180.25571 * 13 12 11 39 39 H 1.08999 * 109.47221 * 30.02038 * 15 14 13 40 40 H 1.08998 * 109.47220 * 150.01987 * 15 14 13 41 41 H 0.97004 * 120.00379 * 180.02562 * 19 18 16 42 42 H 1.08003 * 119.96160 * 179.97438 * 24 14 13 43 43 H 1.08007 * 120.03923 * 180.02562 * 25 24 14 44 44 H 1.09002 * 109.47299 * 54.99850 * 26 2 1 45 45 H 1.09001 * 109.46935 * 174.99736 * 26 2 1 46 46 H 1.09001 * 109.46985 * 60.00453 * 28 27 26 47 47 H 1.09006 * 109.47382 * 180.02562 * 28 27 26 48 48 H 1.09006 * 109.47402 * 300.00355 * 28 27 26 49 49 H 1.09002 * 109.46830 * 59.99521 * 29 27 26 50 50 H 1.08997 * 109.47443 * 179.97438 * 29 27 26 51 51 H 1.09000 * 109.47139 * 300.00125 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2493 5 7 1.6525 0.0352 -2.4424 6 6 1.9956 -0.4138 -3.6660 7 8 2.6259 -1.4446 -3.7793 8 6 1.6000 0.3573 -4.8824 9 8 0.9700 1.3885 -4.7690 10 7 1.9436 -0.0915 -6.1059 11 6 1.4921 0.5764 -7.2471 12 6 1.1823 -0.1402 -8.3964 13 6 0.7318 0.5226 -9.5210 14 6 0.5985 1.8990 -9.5074 15 6 0.1116 2.6194 -10.7383 16 6 1.2897 2.9932 -11.6006 17 1 2.2909 2.7354 -11.2883 18 6 1.0893 3.6644 -12.7881 19 7 -0.1299 3.9779 -13.1687 20 14 2.5496 4.1284 -13.8566 21 1 3.8033 3.6646 -13.2099 22 1 2.4129 3.4853 -15.1881 23 1 2.5934 5.6036 -14.0215 24 6 0.9115 2.6160 -8.3670 25 6 1.3575 1.9591 -7.2372 26 6 2.0400 -0.7212 1.2493 27 7 1.6515 0.0375 2.4456 28 6 1.9125 -0.7357 3.6671 29 6 2.3342 1.3374 2.4894 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 3.1263 -0.7996 -1.2056 34 1 1.6054 -1.7199 -1.2951 35 1 1.1483 0.8590 -2.3518 36 1 2.5043 -0.8780 -6.1942 37 1 1.2897 -1.2147 -8.4088 38 1 0.4868 -0.0342 -10.4133 39 1 -0.5574 1.9675 -11.3000 40 1 -0.4237 3.5219 -10.4433 41 1 -0.2709 4.4498 -14.0044 42 1 0.8067 3.6910 -8.3600 43 1 1.6014 2.5196 -6.3468 44 1 1.6054 -1.7198 1.2953 45 1 3.1263 -0.7995 1.2056 46 1 2.9757 -0.9673 3.7302 47 1 1.6154 -0.1509 4.5377 48 1 1.3396 -1.6627 3.6398 49 1 2.0680 1.9175 1.6058 50 1 2.0283 1.8785 3.3847 51 1 3.4127 1.1808 2.5098 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348425430.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:25 Heat of formation + Delta-G solvation = -46.824050 kcal Electronic energy + Delta-G solvation = -28965.214310 eV Core-core repulsion = 24864.337087 eV Total energy + Delta-G solvation = -4100.877223 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.07658 -39.55329 -38.64391 -37.97878 -36.18721 -35.03405 -33.11085 -32.91600 -30.60149 -30.36623 -28.14493 -27.73205 -27.47247 -26.67532 -24.57922 -23.06968 -22.47812 -22.27423 -20.96625 -20.48007 -20.00962 -18.79804 -17.40858 -16.67982 -16.57749 -16.30954 -16.21329 -15.91915 -15.40970 -15.18554 -15.12258 -14.95700 -14.42177 -14.28838 -14.22457 -13.81391 -13.50344 -13.12357 -13.06419 -12.94611 -12.90124 -12.62543 -12.52350 -12.25498 -12.23129 -12.08205 -11.84128 -11.57194 -11.44652 -11.39499 -11.30149 -11.14630 -10.85853 -10.59271 -10.41410 -10.07033 -9.79945 -9.61968 -9.44086 -9.30715 -8.90978 -8.43812 -8.34941 -7.49485 -6.04800 -4.08952 1.08394 1.93742 2.00390 2.18665 3.05095 3.29128 3.29785 3.36922 3.41879 3.52199 4.20419 4.22334 4.35348 4.38591 4.42235 4.52898 4.64434 4.81876 4.89494 4.91619 4.97906 5.12473 5.18858 5.25568 5.29400 5.35016 5.37981 5.38408 5.42383 5.50582 5.55307 5.68819 5.80834 5.84459 5.94128 5.96291 6.02252 6.14058 6.43875 6.44883 6.55241 6.59522 6.75386 6.84620 7.11007 7.15032 7.26716 7.47750 7.53601 7.64439 7.83040 7.87601 7.91012 8.30701 8.96658 9.55144 11.04872 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.027672 B = 0.001494 C = 0.001472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.605627 B =18740.429199 C =19020.730021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.103 4.103 3 H 0.082 0.918 4 C 0.122 3.878 5 N -0.698 5.698 6 C 0.512 3.488 7 O -0.520 6.520 8 C 0.501 3.499 9 O -0.503 6.503 10 N -0.633 5.633 11 C 0.092 3.908 12 C -0.134 4.134 13 C -0.109 4.109 14 C -0.036 4.036 15 C 0.046 3.954 16 C -0.512 4.512 17 H 0.058 0.942 18 C 0.059 3.941 19 N -0.894 5.894 20 Si 0.895 3.105 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.110 4.110 25 C -0.114 4.114 26 C 0.061 3.939 27 N -0.544 5.544 28 C 0.024 3.976 29 C 0.018 3.982 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.414 0.586 36 H 0.417 0.583 37 H 0.117 0.883 38 H 0.125 0.875 39 H 0.030 0.970 40 H 0.030 0.970 41 H 0.261 0.739 42 H 0.123 0.877 43 H 0.129 0.871 44 H 0.080 0.920 45 H 0.038 0.962 46 H 0.025 0.975 47 H 0.069 0.931 48 H 0.069 0.931 49 H 0.072 0.928 50 H 0.068 0.932 51 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.055 -10.441 31.700 33.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 H 0.100 0.900 4 C -0.002 4.002 5 N -0.352 5.352 6 C 0.292 3.708 7 O -0.396 6.396 8 C 0.282 3.718 9 O -0.378 6.378 10 N -0.279 5.279 11 C 0.000 4.000 12 C -0.154 4.154 13 C -0.127 4.127 14 C -0.037 4.037 15 C 0.010 3.990 16 C -0.550 4.550 17 H 0.076 0.924 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.722 3.278 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.209 1.209 24 C -0.128 4.128 25 C -0.133 4.133 26 C -0.067 4.067 27 N -0.268 5.268 28 C -0.124 4.124 29 C -0.130 4.130 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.251 0.749 36 H 0.254 0.746 37 H 0.135 0.865 38 H 0.142 0.858 39 H 0.048 0.952 40 H 0.048 0.952 41 H 0.071 0.929 42 H 0.141 0.859 43 H 0.147 0.853 44 H 0.098 0.902 45 H 0.056 0.944 46 H 0.044 0.956 47 H 0.088 0.912 48 H 0.088 0.912 49 H 0.091 0.909 50 H 0.087 0.913 51 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 3.458 -10.303 31.602 33.418 hybrid contribution 1.736 0.095 -0.593 1.837 sum 5.194 -10.208 31.009 33.056 Atomic orbital electron populations 1.21773 0.93458 1.02342 1.02371 1.21417 0.97842 1.00307 0.92620 0.90025 1.21494 1.00392 0.95585 0.82713 1.45719 1.56503 1.28168 1.04859 1.20068 0.80493 0.85516 0.84715 1.90770 1.38593 1.23550 1.86645 1.20084 0.81068 0.85991 0.84625 1.90786 1.38185 1.22643 1.86170 1.42992 1.49863 1.31298 1.03763 1.17528 1.04641 0.91675 0.86132 1.20799 1.02615 0.98943 0.93089 1.20909 1.00122 0.94554 0.97140 1.20785 0.93292 0.93438 0.96143 1.18382 0.96672 0.95257 0.88734 1.21101 0.92813 1.36724 1.04353 0.92361 1.25004 0.95806 0.95776 0.97703 1.69963 1.20018 1.40475 1.22801 0.86488 0.82807 0.78181 0.80289 1.19667 1.20951 1.20944 1.21020 0.99694 1.00093 0.92034 1.21124 1.00965 0.92169 0.99090 1.22080 0.98131 0.97402 0.89107 1.61920 1.58264 1.04305 1.02267 1.22386 0.99235 0.98574 0.92220 1.22478 0.96135 0.91303 1.03065 0.92865 0.92602 0.90968 0.90937 0.90616 0.74864 0.74557 0.86470 0.85753 0.95202 0.95189 0.92881 0.85868 0.85319 0.90196 0.94351 0.95616 0.91230 0.91234 0.90920 0.91281 0.95545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 8.95 37.16 0.33 -0.48 16 2 C -0.10 -0.53 2.34 -90.61 -0.21 -0.75 16 3 H 0.08 0.43 6.34 -51.93 -0.33 0.10 16 4 C 0.12 0.81 5.06 -4.04 -0.02 0.79 16 5 N -0.70 -5.97 5.28 -60.76 -0.32 -6.29 16 6 C 0.51 5.84 7.89 -11.63 -0.09 5.75 16 7 O -0.52 -6.81 16.48 5.50 0.09 -6.72 16 8 C 0.50 6.68 7.73 -11.63 -0.09 6.59 16 9 O -0.50 -7.71 13.91 5.47 0.08 -7.63 16 10 N -0.63 -8.53 5.32 -10.29 -0.05 -8.59 16 11 C 0.09 1.51 6.30 -83.75 -0.53 0.98 16 12 C -0.13 -2.18 9.97 -39.38 -0.39 -2.58 16 13 C -0.11 -2.06 9.69 -39.61 -0.38 -2.44 16 14 C -0.04 -0.78 5.07 -104.58 -0.53 -1.31 16 15 C 0.05 1.18 5.10 -29.03 -0.15 1.03 16 16 C -0.51 -14.20 9.09 -34.44 -0.31 -14.52 16 17 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 18 C 0.06 1.65 5.46 -17.83 -0.10 1.55 16 19 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 20 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 C -0.11 -2.18 9.69 -39.62 -0.38 -2.57 16 25 C -0.11 -2.04 8.70 -39.38 -0.34 -2.38 16 26 C 0.06 0.30 4.35 -3.83 -0.02 0.29 16 27 N -0.54 -2.93 4.47 -251.26 -1.12 -4.05 16 28 C 0.02 0.10 9.57 60.06 0.57 0.68 16 29 C 0.02 0.09 9.33 60.06 0.56 0.65 16 30 H 0.05 0.32 7.18 -51.93 -0.37 -0.05 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.45 7.75 -51.93 -0.40 0.05 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.41 3.23 7.12 -40.82 -0.29 2.94 16 36 H 0.42 4.73 8.30 -40.82 -0.34 4.40 16 37 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 38 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 39 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 40 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 41 H 0.26 7.23 8.31 -40.82 -0.34 6.90 16 42 H 0.12 2.38 8.06 -52.48 -0.42 1.96 16 43 H 0.13 2.23 6.22 -52.48 -0.33 1.90 16 44 H 0.08 0.38 8.06 -51.93 -0.42 -0.04 16 45 H 0.04 0.19 8.12 -51.93 -0.42 -0.23 16 46 H 0.03 0.11 8.14 -51.93 -0.42 -0.32 16 47 H 0.07 0.26 8.12 -51.93 -0.42 -0.16 16 48 H 0.07 0.27 8.12 -51.93 -0.42 -0.15 16 49 H 0.07 0.34 6.37 -51.93 -0.33 0.01 16 50 H 0.07 0.29 8.12 -51.93 -0.42 -0.13 16 51 H 0.03 0.12 8.14 -51.93 -0.42 -0.30 16 LS Contribution 420.82 15.07 6.34 6.34 Total: -1.00 -31.93 420.82 -9.62 -41.55 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -8.26 Total: 3.21 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: -2.08 Total: -8.72 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: -0.76 Total: -44.44 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: 0.17 Total: -14.35 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -31.93 -9.62 -41.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348425430.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.272 kcal (2) G-P(sol) polarization free energy of solvation -31.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds