Wall clock time and date at job start Wed Apr 1 2020 04:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47595 * 2 1 4 4 C 1.53007 * 109.47027 * 239.99634 * 2 1 3 5 5 N 1.46498 * 109.46968 * 65.00422 * 4 2 1 6 6 C 1.34777 * 119.99843 * 180.02562 * 5 4 2 7 7 O 1.21349 * 120.00051 * 359.97438 * 6 5 4 8 8 C 1.49358 * 119.99693 * 179.97438 * 6 5 4 9 9 O 1.21378 * 120.00057 * 0.02562 * 8 6 5 10 10 N 1.34777 * 119.99693 * 179.97438 * 8 6 5 11 11 C 1.39719 * 119.99664 * 175.38526 * 10 8 6 12 12 C 1.38933 * 120.07482 * 214.81520 * 11 10 8 13 13 C 1.38095 * 119.92494 * 179.76493 * 12 11 10 14 14 C 1.38292 * 120.07447 * 0.49379 * 13 12 11 15 15 C 1.50705 * 119.92371 * 179.76394 * 14 13 12 16 16 C 1.50709 * 109.47004 * 270.02203 * 15 14 13 17 17 H 1.08002 * 119.99779 * 359.97438 * 16 15 14 18 18 C 1.37869 * 119.99581 * 179.97438 * 16 15 14 19 19 N 1.31508 * 120.00482 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99645 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47175 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47279 * 119.99872 * 20 18 16 23 23 H 1.48502 * 109.47047 * 239.99752 * 20 18 16 24 24 C 1.38291 * 120.15427 * 359.78595 * 14 13 12 25 25 C 1.38092 * 120.07362 * 359.95391 * 24 14 13 26 26 C 1.53003 * 109.47055 * 119.99863 * 2 1 3 27 27 N 1.46895 * 109.47316 * 294.99621 * 26 2 1 28 28 C 1.46894 * 111.00178 * 169.99787 * 27 26 2 29 29 C 1.46897 * 111.00239 * 293.95481 * 27 26 2 30 30 H 1.09002 * 109.46687 * 59.99886 * 1 2 3 31 31 H 1.08994 * 109.47098 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46687 * 300.00472 * 1 2 3 33 33 H 1.08995 * 109.46984 * 185.00142 * 4 2 1 34 34 H 1.08998 * 109.47058 * 305.00082 * 4 2 1 35 35 H 0.97004 * 119.99929 * 359.97438 * 5 4 2 36 36 H 0.96997 * 119.99914 * 355.37580 * 10 8 6 37 37 H 1.07999 * 120.03478 * 0.02562 * 12 11 10 38 38 H 1.08000 * 119.96163 * 180.25571 * 13 12 11 39 39 H 1.08999 * 109.47221 * 30.02038 * 15 14 13 40 40 H 1.08998 * 109.47220 * 150.01987 * 15 14 13 41 41 H 0.97004 * 120.00379 * 180.02562 * 19 18 16 42 42 H 1.08003 * 119.96160 * 179.97438 * 24 14 13 43 43 H 1.08007 * 120.03923 * 180.02562 * 25 24 14 44 44 H 1.09002 * 109.47299 * 54.99850 * 26 2 1 45 45 H 1.09001 * 109.46935 * 174.99736 * 26 2 1 46 46 H 1.09001 * 109.46985 * 60.00453 * 28 27 26 47 47 H 1.09006 * 109.47382 * 180.02562 * 28 27 26 48 48 H 1.09006 * 109.47402 * 300.00355 * 28 27 26 49 49 H 1.09002 * 109.46830 * 59.99521 * 29 27 26 50 50 H 1.08997 * 109.47443 * 179.97438 * 29 27 26 51 51 H 1.09000 * 109.47139 * 300.00125 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2493 5 7 1.6525 0.0352 -2.4424 6 6 1.9956 -0.4138 -3.6660 7 8 2.6259 -1.4446 -3.7793 8 6 1.6000 0.3573 -4.8824 9 8 0.9700 1.3885 -4.7690 10 7 1.9436 -0.0915 -6.1059 11 6 1.4921 0.5764 -7.2471 12 6 1.1823 -0.1402 -8.3964 13 6 0.7318 0.5226 -9.5210 14 6 0.5985 1.8990 -9.5074 15 6 0.1116 2.6194 -10.7383 16 6 1.2897 2.9932 -11.6006 17 1 2.2909 2.7354 -11.2883 18 6 1.0893 3.6644 -12.7881 19 7 -0.1299 3.9779 -13.1687 20 14 2.5496 4.1284 -13.8566 21 1 3.8033 3.6646 -13.2099 22 1 2.4129 3.4853 -15.1881 23 1 2.5934 5.6036 -14.0215 24 6 0.9115 2.6160 -8.3670 25 6 1.3575 1.9591 -7.2372 26 6 2.0400 -0.7212 1.2493 27 7 1.6515 0.0375 2.4456 28 6 1.9125 -0.7357 3.6671 29 6 2.3342 1.3374 2.4894 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 3.1263 -0.7996 -1.2056 34 1 1.6054 -1.7199 -1.2951 35 1 1.1483 0.8590 -2.3518 36 1 2.5043 -0.8780 -6.1942 37 1 1.2897 -1.2147 -8.4088 38 1 0.4868 -0.0342 -10.4133 39 1 -0.5574 1.9675 -11.3000 40 1 -0.4237 3.5219 -10.4433 41 1 -0.2709 4.4498 -14.0044 42 1 0.8067 3.6910 -8.3600 43 1 1.6014 2.5196 -6.3468 44 1 1.6054 -1.7198 1.2953 45 1 3.1263 -0.7995 1.2056 46 1 2.9757 -0.9673 3.7302 47 1 1.6154 -0.1509 4.5377 48 1 1.3396 -1.6627 3.6398 49 1 2.0680 1.9175 1.6058 50 1 2.0283 1.8785 3.3847 51 1 3.4127 1.1808 2.5098 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348425430.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:24 Heat of formation + Delta-G solvation = -67.762033 kcal Electronic energy + Delta-G solvation = -28966.122249 eV Core-core repulsion = 24864.337087 eV Total energy + Delta-G solvation = -4101.785162 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.13571 -40.60012 -39.43563 -39.00356 -36.94830 -36.25538 -34.99500 -33.61934 -32.30529 -31.81818 -28.99254 -28.47899 -27.97888 -27.78009 -25.85061 -24.47538 -23.85785 -22.99310 -22.03757 -21.51070 -20.92055 -19.75292 -18.54481 -18.47564 -17.66132 -17.32236 -17.08658 -16.78113 -16.43464 -16.10637 -15.97293 -15.95203 -15.64846 -15.37799 -15.13472 -14.79168 -14.59858 -14.50873 -14.31681 -14.03289 -13.71085 -13.59693 -13.32443 -13.29881 -13.19951 -12.98382 -12.85537 -12.62803 -12.61669 -12.57928 -12.42526 -12.04917 -12.03827 -11.90933 -11.64407 -11.57891 -11.51323 -11.11171 -10.72515 -10.59612 -10.35512 -9.79699 -9.28335 -8.98950 -8.18141 -6.32081 -0.00917 0.54331 0.63711 1.18305 1.40577 1.41392 1.54616 2.02806 2.40861 2.48717 2.95115 3.02102 3.12191 3.30420 3.77984 3.88543 3.97259 4.02666 4.11586 4.29649 4.36575 4.44823 4.45792 4.51873 4.53763 4.59060 4.61553 4.64356 4.70948 4.74382 4.84579 4.92981 5.03899 5.05033 5.07068 5.08945 5.10455 5.25751 5.28845 5.31101 5.38632 5.39463 5.46920 5.55285 5.75984 5.84061 6.06369 6.07840 6.08991 6.09400 6.22337 6.25097 6.63938 6.80964 6.82492 7.36675 8.90552 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.027672 B = 0.001494 C = 0.001472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.605627 B =18740.429199 C =19020.730021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.092 4.092 3 H 0.084 0.916 4 C 0.123 3.877 5 N -0.684 5.684 6 C 0.519 3.481 7 O -0.536 6.536 8 C 0.503 3.497 9 O -0.523 6.523 10 N -0.627 5.627 11 C 0.107 3.893 12 C -0.121 4.121 13 C -0.113 4.113 14 C -0.068 4.068 15 C 0.056 3.944 16 C -0.528 4.528 17 H 0.056 0.944 18 C 0.005 3.995 19 N -0.930 5.930 20 Si 0.965 3.035 21 H -0.265 1.265 22 H -0.276 1.276 23 H -0.278 1.278 24 C -0.119 4.119 25 C -0.117 4.117 26 C 0.063 3.937 27 N -0.555 5.555 28 C 0.024 3.976 29 C 0.018 3.982 30 H 0.048 0.952 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.419 0.581 36 H 0.431 0.569 37 H 0.157 0.843 38 H 0.128 0.872 39 H 0.008 0.992 40 H 0.002 0.998 41 H 0.265 0.735 42 H 0.116 0.884 43 H 0.135 0.865 44 H 0.083 0.917 45 H 0.040 0.960 46 H 0.026 0.974 47 H 0.073 0.927 48 H 0.072 0.928 49 H 0.072 0.928 50 H 0.072 0.928 51 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.626 -11.875 33.330 35.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.112 4.112 3 H 0.102 0.898 4 C 0.000 4.000 5 N -0.337 5.337 6 C 0.298 3.702 7 O -0.414 6.414 8 C 0.285 3.715 9 O -0.399 6.399 10 N -0.274 5.274 11 C 0.013 3.987 12 C -0.141 4.141 13 C -0.132 4.132 14 C -0.069 4.069 15 C 0.019 3.981 16 C -0.565 4.565 17 H 0.074 0.926 18 C -0.193 4.193 19 N -0.570 5.570 20 Si 0.789 3.211 21 H -0.189 1.189 22 H -0.201 1.201 23 H -0.203 1.203 24 C -0.138 4.138 25 C -0.137 4.137 26 C -0.065 4.065 27 N -0.279 5.279 28 C -0.124 4.124 29 C -0.130 4.130 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.257 0.743 36 H 0.270 0.730 37 H 0.175 0.825 38 H 0.146 0.854 39 H 0.026 0.974 40 H 0.021 0.979 41 H 0.074 0.926 42 H 0.134 0.866 43 H 0.153 0.847 44 H 0.102 0.898 45 H 0.058 0.942 46 H 0.045 0.955 47 H 0.091 0.909 48 H 0.091 0.909 49 H 0.091 0.909 50 H 0.091 0.909 51 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 5.034 -11.750 33.278 35.648 hybrid contribution 1.210 0.505 -0.934 1.610 sum 6.245 -11.245 32.343 34.807 Atomic orbital electron populations 1.21727 0.93734 1.02167 1.01936 1.21319 0.97399 1.00312 0.92121 0.89766 1.21620 1.00653 0.95542 0.82215 1.45750 1.55310 1.28139 1.04539 1.19637 0.80693 0.85109 0.84711 1.90775 1.39703 1.24142 1.86739 1.20478 0.80276 0.85661 0.85085 1.90785 1.38965 1.23624 1.86507 1.42929 1.49959 1.31507 1.03020 1.17594 1.02742 0.91221 0.87093 1.21064 1.00632 1.00753 0.91633 1.20982 1.00228 0.93468 0.98480 1.20482 0.96426 0.94726 0.95217 1.18118 0.95624 0.94087 0.90301 1.21422 0.93302 1.36794 1.05027 0.92595 1.25900 0.98665 0.95593 0.99108 1.70083 1.22213 1.41251 1.23465 0.85401 0.79294 0.77976 0.78402 1.18914 1.20126 1.20346 1.20961 1.00437 0.99936 0.92422 1.21163 1.00952 0.93155 0.98409 1.22056 0.98231 0.97457 0.88798 1.61931 1.58596 1.04673 1.02697 1.22408 0.99372 0.98689 0.91953 1.22487 0.96090 0.91162 1.03263 0.93270 0.92640 0.91393 0.90592 0.90436 0.74293 0.72976 0.82502 0.85373 0.97389 0.97932 0.92596 0.86595 0.84701 0.89843 0.94169 0.95512 0.90855 0.90899 0.90942 0.90937 0.95553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.95 71.98 0.64 -0.73 16 2 C -0.09 -0.79 2.34 -10.79 -0.03 -0.82 16 3 H 0.08 0.72 6.34 -2.39 -0.02 0.70 16 4 C 0.12 1.37 5.06 86.38 0.44 1.81 16 5 N -0.68 -10.27 5.28 -464.51 -2.45 -12.72 16 6 C 0.52 10.67 7.89 87.24 0.69 11.36 16 7 O -0.54 -12.74 16.48 -3.24 -0.05 -12.79 16 8 C 0.50 12.35 7.73 87.24 0.67 13.02 16 9 O -0.52 -15.19 13.91 -3.33 -0.05 -15.24 16 10 N -0.63 -15.25 5.32 -304.83 -1.62 -16.87 16 11 C 0.11 3.27 6.30 38.22 0.24 3.51 16 12 C -0.12 -3.64 9.97 22.40 0.22 -3.42 16 13 C -0.11 -4.23 9.69 22.25 0.22 -4.01 16 14 C -0.07 -3.01 5.07 -19.84 -0.10 -3.11 16 15 C 0.06 2.98 5.10 29.11 0.15 3.13 16 16 C -0.53 -30.10 9.09 25.60 0.23 -29.86 16 17 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 18 C 0.01 0.31 5.46 84.65 0.46 0.77 16 19 N -0.93 -56.04 13.29 21.44 0.28 -55.75 16 20 Si 0.96 44.27 29.54 68.60 2.03 46.30 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 22 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 23 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 24 C -0.12 -4.83 9.69 22.25 0.22 -4.62 16 25 C -0.12 -4.11 8.70 22.40 0.19 -3.92 16 26 C 0.06 0.51 4.35 86.31 0.38 0.89 16 27 N -0.56 -5.13 4.47 -948.86 -4.24 -9.38 16 28 C 0.02 0.17 9.57 127.69 1.22 1.39 16 29 C 0.02 0.15 9.33 127.69 1.19 1.34 16 30 H 0.05 0.53 7.18 -2.39 -0.02 0.51 16 31 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.07 0.75 7.75 -2.38 -0.02 0.74 16 33 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.42 5.72 7.12 -92.71 -0.66 5.06 16 36 H 0.43 8.40 8.30 -92.71 -0.77 7.63 16 37 H 0.16 3.47 8.06 -2.91 -0.02 3.45 16 38 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 39 H 0.01 0.44 8.08 -2.39 -0.02 0.42 16 40 H 0.00 0.14 8.08 -2.39 -0.02 0.12 16 41 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 42 H 0.12 4.72 8.06 -2.91 -0.02 4.70 16 43 H 0.14 4.56 6.22 -2.91 -0.02 4.54 16 44 H 0.08 0.63 8.06 -2.39 -0.02 0.61 16 45 H 0.04 0.32 8.12 -2.39 -0.02 0.30 16 46 H 0.03 0.19 8.14 -2.39 -0.02 0.17 16 47 H 0.07 0.46 8.12 -2.38 -0.02 0.44 16 48 H 0.07 0.47 8.12 -2.38 -0.02 0.45 16 49 H 0.07 0.58 6.37 -2.39 -0.02 0.56 16 50 H 0.07 0.53 8.12 -2.39 -0.02 0.51 16 51 H 0.03 0.21 8.14 -2.39 -0.02 0.19 16 Total: -1.00 -69.23 420.82 0.45 -68.79 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: -0.49 Total: 20.93 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: 7.04 Total: -13.25 kcal Atomic # 7 Polarization: -86.70 SS G_CDS: -8.03 Total: -94.73 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -0.10 Total: -28.03 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -69.23 0.45 -68.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348425430.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.025 kcal (2) G-P(sol) polarization free energy of solvation -69.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds