Wall clock time and date at job start Wed Apr 1 2020 04:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.52999 * 109.46626 * 239.99528 * 2 1 3 5 5 N 1.46504 * 109.46831 * 185.00094 * 4 2 1 6 6 S 1.65604 * 120.00118 * 165.00678 * 5 4 2 7 7 O 1.42098 * 104.27934 * 181.07329 * 6 5 4 8 8 O 1.42102 * 104.27147 * 308.92466 * 6 5 4 9 9 C 1.81396 * 104.45215 * 64.99340 * 6 5 4 10 10 C 1.52999 * 109.47195 * 179.97438 * 9 6 5 11 11 C 1.52995 * 109.47605 * 300.00893 * 10 9 6 12 12 C 1.53000 * 109.46772 * 60.00554 * 10 9 6 13 13 C 1.50696 * 109.47039 * 180.02562 * 10 9 6 14 14 H 1.08004 * 120.00365 * 0.02562 * 13 10 9 15 15 C 1.37877 * 119.99898 * 180.02562 * 13 10 9 16 16 N 1.31521 * 120.00075 * 359.97438 * 15 13 10 17 17 Si 1.86799 * 119.99963 * 180.02562 * 15 13 10 18 18 H 1.48502 * 109.46969 * 90.00177 * 17 15 13 19 19 H 1.48501 * 109.46889 * 209.99555 * 17 15 13 20 20 H 1.48498 * 109.47439 * 329.99669 * 17 15 13 21 21 N 1.46898 * 109.47006 * 119.99780 * 2 1 3 22 22 C 1.46960 * 110.99944 * 58.79907 * 21 2 1 23 23 C 1.53052 * 109.36342 * 176.81009 * 22 21 2 24 24 N 1.46954 * 109.36444 * 58.40106 * 23 22 21 25 25 C 1.46901 * 110.99929 * 176.81388 * 24 23 22 26 26 C 1.46960 * 110.88109 * 300.67853 * 24 23 22 27 27 C 1.46954 * 111.00088 * 294.99842 * 21 2 1 28 28 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 29 29 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 30 30 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47768 * 305.00075 * 4 2 1 32 32 H 1.09005 * 109.47260 * 65.00844 * 4 2 1 33 33 H 0.96996 * 120.00071 * 344.99948 * 5 4 2 34 34 H 1.08999 * 109.47681 * 300.00629 * 9 6 5 35 35 H 1.09007 * 109.46528 * 60.00596 * 9 6 5 36 36 H 1.08995 * 109.47558 * 59.99287 * 11 10 9 37 37 H 1.08995 * 109.47225 * 179.97438 * 11 10 9 38 38 H 1.09004 * 109.46619 * 299.99909 * 11 10 9 39 39 H 1.09008 * 109.47294 * 59.99656 * 12 10 9 40 40 H 1.08996 * 109.47489 * 180.02562 * 12 10 9 41 41 H 1.09001 * 109.47322 * 300.00125 * 12 10 9 42 42 H 0.97003 * 119.99900 * 180.02562 * 16 15 13 43 43 H 1.08993 * 109.48741 * 296.77593 * 22 21 2 44 44 H 1.09005 * 109.49118 * 56.84490 * 22 21 2 45 45 H 1.08999 * 109.48754 * 298.43146 * 23 22 21 46 46 H 1.08999 * 109.49156 * 178.36913 * 23 22 21 47 47 H 1.09003 * 109.47211 * 183.79728 * 25 24 23 48 48 H 1.09001 * 109.47288 * 303.79721 * 25 24 23 49 49 H 1.08994 * 109.47655 * 63.79773 * 25 24 23 50 50 H 1.09003 * 109.48742 * 299.35471 * 26 24 23 51 51 H 1.08994 * 109.50540 * 179.30217 * 26 24 23 52 52 H 1.08994 * 109.48769 * 303.15233 * 27 21 2 53 53 H 1.08998 * 109.49183 * 63.20585 * 27 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 7 3.5000 -0.8265 -1.1906 6 16 4.2964 -1.8691 -2.2012 7 8 5.6651 -1.7221 -1.8486 8 8 3.6239 -3.1087 -2.0264 9 6 3.9926 -1.2090 -3.8633 10 6 4.6863 -2.0961 -4.8990 11 6 6.1915 -2.1176 -4.6259 12 6 4.1308 -3.5187 -4.8059 13 6 4.4344 -1.5474 -6.2797 14 1 3.8394 -0.6549 -6.4059 15 6 4.9636 -2.1847 -7.3819 16 7 5.6885 -3.2712 -7.2283 17 14 4.6519 -1.5041 -9.0934 18 1 5.7249 -0.5397 -9.4455 19 1 4.6458 -2.6180 -10.0754 20 1 3.3375 -0.8136 -9.1198 21 7 2.0197 -0.6924 1.1995 22 6 1.5251 -2.0755 1.2479 23 6 2.1201 -2.7848 2.4667 24 7 1.7490 -2.0528 3.6857 25 6 2.2388 -2.7452 4.8852 26 6 2.2436 -0.6698 3.6373 27 6 1.6486 0.0395 2.4185 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6053 -1.7199 -1.2951 32 1 1.7517 -0.1584 -2.1370 33 1 4.0003 -0.2855 -0.5598 34 1 2.9202 -1.1933 -4.0577 35 1 4.3888 -0.1957 -3.9297 36 1 6.3741 -2.5142 -3.6272 37 1 6.6856 -2.7499 -5.3635 38 1 6.5872 -1.1041 -4.6922 39 1 3.0583 -3.5034 -5.0004 40 1 4.6253 -4.1508 -5.5434 41 1 4.3132 -3.9153 -3.8071 42 1 6.0611 -3.7194 -8.0037 43 1 0.4379 -2.0704 1.3250 44 1 1.8233 -2.6004 0.3403 45 1 3.2060 -2.8139 2.3763 46 1 1.7320 -3.8019 2.5209 47 1 1.8932 -2.2191 5.7750 48 1 1.8580 -3.7665 4.8961 49 1 3.3285 -2.7640 4.8745 50 1 3.3309 -0.6749 3.5602 51 1 1.9459 -0.1448 4.5449 52 1 2.0368 1.0566 2.3643 53 1 0.5628 0.0689 2.5088 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413305128.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:26 Heat of formation + Delta-G solvation = -82.908637 kcal Electronic energy + Delta-G solvation = -30916.795624 eV Core-core repulsion = 26949.797607 eV Total energy + Delta-G solvation = -3966.998017 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.67635 -38.13038 -38.08784 -37.78336 -36.81360 -35.15059 -33.61669 -31.95578 -31.87354 -28.36473 -28.27476 -27.67897 -27.25055 -26.70568 -24.92297 -24.38026 -22.03503 -21.32183 -20.18926 -20.07172 -18.65661 -17.88680 -17.60352 -17.23366 -16.81977 -16.58828 -16.30611 -15.99048 -15.93878 -15.69358 -15.40227 -15.07574 -14.97353 -14.65688 -14.41332 -14.18845 -13.95564 -13.77909 -13.60920 -13.43040 -13.36685 -13.09886 -12.95775 -12.87348 -12.76038 -12.66055 -12.59495 -12.48042 -12.43276 -12.29696 -12.15424 -12.11553 -11.92082 -11.82686 -11.60237 -11.55244 -11.45121 -11.32454 -10.64940 -10.40719 -10.17923 -9.41235 -9.15181 -8.01934 -6.20584 -0.52739 1.44582 1.46308 1.54932 2.01130 2.45021 2.89737 2.94643 2.99539 3.20380 3.40028 3.74393 3.88608 4.02804 4.10983 4.17384 4.20171 4.23725 4.35118 4.35940 4.44374 4.53279 4.59051 4.61260 4.61951 4.66930 4.67866 4.77643 4.87233 4.88179 4.88618 4.93800 4.98728 5.01461 5.02249 5.06932 5.10370 5.11951 5.15524 5.39092 5.40437 5.52249 5.65699 5.96777 5.98374 5.98716 6.12945 6.17498 6.21678 6.30916 6.35502 6.84577 7.47725 8.97928 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022681 B = 0.002662 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.243734 B =10515.268625 C =11059.076315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.080 3.920 3 H 0.108 0.892 4 C 0.110 3.890 5 N -1.100 6.100 6 S 2.615 3.385 7 O -0.999 6.999 8 O -0.992 6.992 9 C -0.588 4.588 10 C 0.070 3.930 11 C -0.161 4.161 12 C -0.159 4.159 13 C -0.516 4.516 14 H 0.064 0.936 15 C 0.016 3.984 16 N -0.909 5.909 17 Si 0.954 3.046 18 H -0.279 1.279 19 H -0.288 1.288 20 H -0.266 1.266 21 N -0.541 5.541 22 C 0.052 3.948 23 C 0.056 3.944 24 N -0.550 5.550 25 C 0.024 3.976 26 C 0.054 3.946 27 C 0.057 3.943 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.423 0.577 34 H 0.138 0.862 35 H 0.136 0.864 36 H 0.031 0.969 37 H 0.070 0.930 38 H 0.039 0.961 39 H 0.041 0.959 40 H 0.069 0.931 41 H 0.032 0.968 42 H 0.261 0.739 43 H 0.052 0.948 44 H 0.070 0.930 45 H 0.023 0.977 46 H 0.081 0.919 47 H 0.082 0.918 48 H 0.071 0.929 49 H 0.021 0.979 50 H 0.029 0.971 51 H 0.095 0.905 52 H 0.094 0.906 53 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.820 8.656 20.543 25.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.030 4.030 3 H 0.126 0.874 4 C -0.016 4.016 5 N -0.862 5.862 6 S 2.712 3.288 7 O -0.989 6.989 8 O -0.982 6.982 9 C -0.720 4.720 10 C 0.068 3.932 11 C -0.219 4.219 12 C -0.217 4.217 13 C -0.555 4.555 14 H 0.082 0.918 15 C -0.183 4.183 16 N -0.548 5.548 17 Si 0.781 3.219 18 H -0.205 1.205 19 H -0.214 1.214 20 H -0.190 1.190 21 N -0.266 5.266 22 C -0.077 4.077 23 C -0.073 4.073 24 N -0.275 5.275 25 C -0.124 4.124 26 C -0.074 4.074 27 C -0.071 4.071 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.109 0.891 33 H 0.260 0.740 34 H 0.156 0.844 35 H 0.155 0.845 36 H 0.049 0.951 37 H 0.089 0.911 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.088 0.912 41 H 0.051 0.949 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.089 0.911 45 H 0.042 0.958 46 H 0.100 0.900 47 H 0.100 0.900 48 H 0.090 0.910 49 H 0.039 0.961 50 H 0.048 0.952 51 H 0.113 0.887 52 H 0.112 0.888 53 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -11.333 7.639 20.632 24.748 hybrid contribution 0.249 0.457 -1.269 1.371 sum -11.084 8.096 19.363 23.734 Atomic orbital electron populations 1.22381 0.95304 1.02693 1.03750 1.21923 0.94070 0.98695 0.88296 0.87401 1.21676 0.78756 1.01673 0.99492 1.55077 1.15515 1.62254 1.53307 1.04615 0.72880 0.74424 0.76868 1.93495 1.35379 1.86836 1.83186 1.93488 1.75862 1.43073 1.85735 1.30472 1.11057 1.11715 1.18759 1.17900 0.91124 0.90992 0.93207 1.22216 0.99173 1.01026 0.99461 1.22193 1.00061 0.99447 0.99961 1.21312 1.32431 1.11215 0.90511 0.91750 1.25698 0.94881 0.95188 1.02568 1.69957 1.34846 1.19314 1.30686 0.85611 0.78706 0.77820 0.79807 1.20462 1.21360 1.19006 1.62296 1.59707 1.02039 1.02525 1.22175 0.98150 0.89700 0.97631 1.22146 0.97772 0.97713 0.89646 1.62240 1.59713 1.02997 1.02554 1.22394 0.97612 0.99785 0.92578 1.22242 0.97318 0.88863 0.98947 1.22219 0.99125 0.97589 0.88151 0.91116 0.90284 0.92646 0.91468 0.89052 0.74034 0.84426 0.84545 0.95060 0.91125 0.94181 0.94003 0.91238 0.94927 0.92985 0.93030 0.91126 0.95838 0.90026 0.89974 0.91027 0.96080 0.95226 0.88722 0.88762 0.93275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.30 8.49 71.98 0.61 -1.69 16 2 C 0.08 1.24 2.48 44.92 0.11 1.35 16 3 H 0.11 1.34 8.11 -2.39 -0.02 1.32 16 4 C 0.11 2.23 5.16 86.38 0.45 2.67 16 5 N -1.10 -27.80 5.63 -187.49 -1.06 -28.86 16 6 S 2.62 94.28 4.49 -56.49 -0.25 94.02 16 7 O -1.00 -42.30 15.70 -127.65 -2.00 -44.31 16 8 O -0.99 -40.82 15.12 -127.65 -1.93 -42.75 16 9 C -0.59 -21.82 5.01 71.98 0.36 -21.45 16 10 C 0.07 3.36 0.52 -52.93 -0.03 3.33 16 11 C -0.16 -8.11 7.77 71.98 0.56 -7.55 16 12 C -0.16 -7.90 7.77 71.98 0.56 -7.34 16 13 C -0.52 -26.70 8.01 25.60 0.21 -26.49 16 14 H 0.06 3.18 7.74 -2.91 -0.02 3.15 16 15 C 0.02 0.84 5.15 84.65 0.44 1.27 16 16 N -0.91 -50.64 9.35 21.45 0.20 -50.44 16 17 Si 0.95 42.03 29.54 68.60 2.03 44.06 16 18 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 19 H -0.29 -12.65 7.11 99.48 0.71 -11.95 16 20 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 21 N -0.54 -9.92 4.36 -870.49 -3.79 -13.71 16 22 C 0.05 1.09 4.81 86.31 0.42 1.51 16 23 C 0.06 1.19 5.62 86.31 0.49 1.67 16 24 N -0.55 -9.93 4.97 -921.94 -4.58 -14.51 16 25 C 0.02 0.36 9.60 127.69 1.23 1.58 16 26 C 0.05 0.85 5.62 86.31 0.49 1.34 16 27 C 0.06 0.83 5.25 86.31 0.45 1.28 16 28 H 0.07 0.79 6.59 -2.39 -0.02 0.78 16 29 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.05 0.81 6.45 -2.39 -0.02 0.80 16 31 H 0.07 1.54 6.18 -2.39 -0.01 1.52 16 32 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.42 9.66 8.54 -96.75 -0.83 8.84 16 34 H 0.14 4.43 8.14 -2.39 -0.02 4.41 16 35 H 0.14 4.52 8.14 -2.39 -0.02 4.50 16 36 H 0.03 1.51 5.46 -2.39 -0.01 1.50 16 37 H 0.07 3.88 6.07 -2.39 -0.01 3.87 16 38 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.04 1.95 8.14 -2.38 -0.02 1.93 16 40 H 0.07 3.79 6.07 -2.39 -0.01 3.78 16 41 H 0.03 1.55 5.47 -2.39 -0.01 1.54 16 42 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 43 H 0.05 1.02 6.46 -2.39 -0.02 1.00 16 44 H 0.07 1.80 6.28 -2.38 -0.01 1.78 16 45 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.08 1.64 8.13 -2.39 -0.02 1.62 16 47 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 48 H 0.07 0.99 8.13 -2.39 -0.02 0.97 16 49 H 0.02 0.33 8.14 -2.39 -0.02 0.31 16 50 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 51 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 52 H 0.09 1.08 8.12 -2.39 -0.02 1.06 16 53 H 0.05 0.69 6.60 -2.39 -0.02 0.68 16 Total: -1.00 -68.08 400.04 -5.00 -73.08 By element: Atomic # 1 Polarization: 31.86 SS G_CDS: 0.06 Total: 31.93 kcal Atomic # 6 Polarization: -54.83 SS G_CDS: 6.33 Total: -48.51 kcal Atomic # 7 Polarization: -98.30 SS G_CDS: -9.23 Total: -107.53 kcal Atomic # 8 Polarization: -83.12 SS G_CDS: -3.93 Total: -87.05 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Atomic # 16 Polarization: 94.28 SS G_CDS: -0.25 Total: 94.02 kcal Total: -68.08 -5.00 -73.08 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413305128.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.829 kcal (2) G-P(sol) polarization free energy of solvation -68.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds