Wall clock time and date at job start Wed Apr 1 2020 04:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47272 * 2 1 4 4 C 1.52997 * 109.47308 * 120.00734 * 2 1 3 5 5 N 1.46498 * 109.47223 * 65.75799 * 4 2 1 6 6 S 1.65602 * 119.99977 * 165.68523 * 5 4 2 7 7 O 1.42104 * 104.27716 * 181.07231 * 6 5 4 8 8 O 1.42095 * 104.27826 * 308.92613 * 6 5 4 9 9 C 1.81404 * 104.45084 * 64.99806 * 6 5 4 10 10 C 1.52997 * 109.47230 * 180.02562 * 9 6 5 11 11 C 1.52998 * 109.46992 * 300.00273 * 10 9 6 12 12 C 1.52999 * 109.47009 * 60.00082 * 10 9 6 13 13 C 1.50701 * 109.46970 * 180.02562 * 10 9 6 14 14 H 1.07988 * 119.99787 * 358.72170 * 13 10 9 15 15 C 1.37875 * 119.99659 * 178.72095 * 13 10 9 16 16 N 1.31511 * 120.00178 * 194.01478 * 15 13 10 17 17 Si 1.86806 * 120.00164 * 14.01694 * 15 13 10 18 18 H 1.48497 * 109.47235 * 86.82231 * 17 15 13 19 19 H 1.48501 * 109.46710 * 206.82343 * 17 15 13 20 20 H 1.48503 * 109.47054 * 326.82216 * 17 15 13 21 21 N 1.46905 * 109.46490 * 240.00320 * 2 1 3 22 22 C 1.46960 * 110.99726 * 185.08843 * 21 2 1 23 23 C 1.53051 * 109.36688 * 176.81397 * 22 21 2 24 24 N 1.46958 * 109.36142 * 58.39906 * 23 22 21 25 25 C 1.46900 * 110.99699 * 176.81399 * 24 23 22 26 26 C 1.46954 * 110.88511 * 300.68032 * 24 23 22 27 27 C 1.46958 * 110.99931 * 61.29542 * 21 2 1 28 28 H 1.09006 * 109.46468 * 299.99290 * 1 2 3 29 29 H 1.08993 * 109.47307 * 59.99618 * 1 2 3 30 30 H 1.08999 * 109.46933 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47172 * 305.75829 * 4 2 1 32 32 H 1.08996 * 109.47070 * 185.75598 * 4 2 1 33 33 H 0.97003 * 120.00109 * 345.68283 * 5 4 2 34 34 H 1.08998 * 109.46729 * 299.99997 * 9 6 5 35 35 H 1.08997 * 109.46731 * 59.99792 * 9 6 5 36 36 H 1.08999 * 109.47542 * 69.07673 * 11 10 9 37 37 H 1.09007 * 109.47125 * 189.08013 * 11 10 9 38 38 H 1.09001 * 109.47206 * 309.07711 * 11 10 9 39 39 H 1.08997 * 109.47099 * 60.00104 * 12 10 9 40 40 H 1.09007 * 109.46849 * 180.02562 * 12 10 9 41 41 H 1.09000 * 109.47017 * 299.99591 * 12 10 9 42 42 H 0.96996 * 120.00775 * 179.97438 * 16 15 13 43 43 H 1.09004 * 109.48876 * 296.78303 * 22 21 2 44 44 H 1.09000 * 109.48766 * 56.84248 * 22 21 2 45 45 H 1.08999 * 109.48526 * 298.43982 * 23 22 21 46 46 H 1.08993 * 109.50934 * 178.37896 * 23 22 21 47 47 H 1.09005 * 109.46889 * 183.80109 * 25 24 23 48 48 H 1.09004 * 109.47253 * 303.79738 * 25 24 23 49 49 H 1.08995 * 109.47593 * 63.80261 * 25 24 23 50 50 H 1.08996 * 109.48675 * 299.35698 * 26 24 23 51 51 H 1.08995 * 109.50881 * 179.29591 * 26 24 23 52 52 H 1.09001 * 109.48513 * 303.14609 * 27 21 2 53 53 H 1.09003 * 109.49163 * 63.21283 * 27 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7214 1.2491 5 7 1.6682 -2.1368 1.1817 6 16 2.3790 -3.2292 2.2034 7 8 1.8032 -4.4761 1.8387 8 8 3.7723 -2.9939 2.0537 9 6 1.8232 -2.7307 3.8567 10 6 2.4207 -3.6749 4.9018 11 6 1.9598 -5.1061 4.6188 12 6 3.9478 -3.6084 4.8355 13 6 1.9584 -3.2612 6.2752 14 1 1.3208 -2.3976 6.3929 15 6 2.3497 -3.9852 7.3814 16 7 1.7414 -3.8059 8.5335 17 14 3.7440 -5.2208 7.2438 18 1 5.0405 -4.5304 7.4618 19 1 3.5689 -6.2807 8.2690 20 1 3.7307 -5.8335 5.8911 21 7 2.0196 -0.6925 -1.1996 22 6 3.4836 -0.8184 -1.1743 23 6 3.9458 -1.6128 -2.3981 24 7 3.4999 -0.9287 -3.6199 25 6 3.9895 -1.6211 -4.8194 26 6 2.0360 -0.8028 -3.6452 27 6 1.5738 -0.0083 -2.4214 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.5950 -0.2707 2.1362 32 1 3.1252 -0.6330 1.3021 33 1 1.0057 -2.4341 0.5386 34 1 2.1520 -1.7113 4.0584 35 1 0.7353 -2.7776 3.9037 36 1 2.4260 -5.4632 3.7005 37 1 2.2492 -5.7518 5.4481 38 1 0.8757 -5.1232 4.5062 39 1 4.2761 -2.5888 5.0371 40 1 4.3734 -4.2815 5.5799 41 1 4.2817 -3.9080 3.8421 42 1 2.0163 -4.3155 9.3117 43 1 3.9343 0.1739 -1.1934 44 1 3.7881 -1.3391 -0.2664 45 1 3.5167 -2.6142 -2.3649 46 1 5.0335 -1.6830 -2.3970 47 1 3.7024 -1.0572 -5.7070 48 1 5.0757 -1.7007 -4.7751 49 1 3.5536 -2.6190 -4.8663 50 1 1.5853 -1.7950 -3.6261 51 1 1.7311 -0.2822 -4.5530 52 1 0.4860 0.0614 -2.4227 53 1 2.0028 0.9932 -2.4546 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413305145.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:30 Heat of formation + Delta-G solvation = -64.772239 kcal Electronic energy + Delta-G solvation = -31098.742014 eV Core-core repulsion = 27132.530450 eV Total energy + Delta-G solvation = -3966.211564 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.58903 -38.48275 -38.16269 -37.85239 -36.87037 -35.08003 -34.03185 -32.25901 -31.61667 -28.94034 -28.37131 -28.13234 -27.24305 -27.02322 -24.63192 -24.14218 -21.67659 -21.52777 -20.73069 -20.06782 -18.84546 -18.12180 -17.83560 -17.33339 -16.91672 -16.81039 -16.13678 -15.94944 -15.82298 -15.75414 -15.49801 -15.15345 -15.00488 -14.97149 -14.80451 -14.60961 -14.16888 -14.07338 -14.01471 -13.44574 -13.22600 -13.12638 -13.01995 -12.97842 -12.88401 -12.69368 -12.64115 -12.59438 -12.55499 -12.31574 -12.20352 -12.08704 -11.97169 -11.83730 -11.76639 -11.57236 -11.34768 -10.94107 -10.67978 -10.49196 -10.19646 -9.41793 -9.21085 -8.34166 -6.33504 -0.59092 1.30098 1.35944 1.42576 1.93519 2.30260 2.84251 2.88038 2.98587 3.00722 3.34469 3.70744 3.79493 3.90301 4.05242 4.09184 4.11056 4.21979 4.26624 4.36680 4.40193 4.44691 4.51482 4.53941 4.60924 4.62086 4.62402 4.67838 4.71278 4.73253 4.81024 4.83310 4.89701 4.92998 4.95779 4.98854 4.99391 5.05426 5.09948 5.16801 5.21095 5.40691 5.44943 5.54081 5.63996 5.96535 5.98524 6.16906 6.19506 6.27380 6.28589 6.69720 7.31056 8.81651 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022446 B = 0.002851 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.165628 B = 9817.116602 C =10424.213977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.079 3.921 3 H 0.067 0.933 4 C 0.108 3.892 5 N -1.098 6.098 6 S 2.617 3.383 7 O -0.992 6.992 8 O -0.984 6.984 9 C -0.585 4.585 10 C 0.045 3.955 11 C -0.179 4.179 12 C -0.184 4.184 13 C -0.501 4.501 14 H 0.051 0.949 15 C 0.025 3.975 16 N -0.937 5.937 17 Si 0.909 3.091 18 H -0.276 1.276 19 H -0.305 1.305 20 H -0.215 1.215 21 N -0.540 5.540 22 C 0.052 3.948 23 C 0.057 3.943 24 N -0.553 5.553 25 C 0.025 3.975 26 C 0.055 3.945 27 C 0.056 3.944 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.424 0.576 34 H 0.141 0.859 35 H 0.138 0.862 36 H 0.050 0.950 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.042 0.958 41 H 0.063 0.937 42 H 0.265 0.735 43 H 0.043 0.957 44 H 0.078 0.922 45 H 0.027 0.973 46 H 0.081 0.919 47 H 0.080 0.920 48 H 0.071 0.929 49 H 0.022 0.978 50 H 0.032 0.968 51 H 0.093 0.907 52 H 0.098 0.902 53 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.394 9.934 -25.708 27.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.030 4.030 3 H 0.085 0.915 4 C -0.019 4.019 5 N -0.861 5.861 6 S 2.713 3.287 7 O -0.982 6.982 8 O -0.974 6.974 9 C -0.716 4.716 10 C 0.042 3.958 11 C -0.237 4.237 12 C -0.241 4.241 13 C -0.540 4.540 14 H 0.069 0.931 15 C -0.173 4.173 16 N -0.576 5.576 17 Si 0.739 3.261 18 H -0.203 1.203 19 H -0.234 1.234 20 H -0.139 1.139 21 N -0.266 5.266 22 C -0.076 4.076 23 C -0.072 4.072 24 N -0.278 5.278 25 C -0.123 4.123 26 C -0.073 4.073 27 C -0.071 4.071 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.110 0.890 32 H 0.091 0.909 33 H 0.261 0.739 34 H 0.159 0.841 35 H 0.156 0.844 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.061 0.939 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.061 0.939 44 H 0.096 0.904 45 H 0.046 0.954 46 H 0.100 0.900 47 H 0.099 0.901 48 H 0.089 0.911 49 H 0.041 0.959 50 H 0.051 0.949 51 H 0.112 0.888 52 H 0.117 0.883 53 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 0.292 9.258 -25.709 27.326 hybrid contribution 0.052 -0.425 0.930 1.024 sum 0.344 8.833 -24.778 26.308 Atomic orbital electron populations 1.21908 0.92522 1.02882 1.03095 1.21823 0.97087 0.95738 0.88348 0.91485 1.21685 1.00696 0.80068 0.99424 1.55098 1.59622 1.19393 1.51971 1.04588 0.74237 0.73356 0.76553 1.93524 1.79405 1.42694 1.82609 1.93503 1.32436 1.85675 1.85799 1.30404 1.12346 1.10549 1.18346 1.18198 0.92006 0.91426 0.94134 1.22777 1.02189 0.97985 1.00706 1.22793 0.97391 1.02795 1.01084 1.20943 1.30389 1.13133 0.89513 0.93125 1.25669 0.98188 0.98352 0.95117 1.70047 1.41576 1.43875 1.02100 0.86877 0.80525 0.79776 0.78955 1.20323 1.23369 1.13941 1.62138 1.10447 1.51763 1.02272 1.22196 0.87930 0.99406 0.98085 1.22137 1.00262 0.95282 0.89490 1.62234 1.11708 1.51320 1.02562 1.22389 1.00946 0.96503 0.92494 1.22229 0.86839 0.99392 0.98801 1.22260 1.01188 0.95400 0.88275 0.90717 0.91151 0.92098 0.89044 0.90884 0.73864 0.84059 0.84363 0.93137 0.92323 0.91817 0.91033 0.93944 0.91823 0.92545 0.93924 0.90419 0.95433 0.90036 0.90091 0.91053 0.95909 0.94943 0.88844 0.88349 0.94104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 8.88 71.98 0.64 -1.11 16 2 C 0.08 1.17 2.34 44.92 0.11 1.28 16 3 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 4 C 0.11 1.97 5.02 86.38 0.43 2.40 16 5 N -1.10 -24.85 5.46 -187.50 -1.02 -25.87 16 6 S 2.62 83.21 4.49 -56.49 -0.25 82.95 16 7 O -0.99 -37.19 15.90 -127.65 -2.03 -39.22 16 8 O -0.98 -35.15 15.12 -127.65 -1.93 -37.08 16 9 C -0.59 -20.00 5.00 71.98 0.36 -19.64 16 10 C 0.04 1.98 0.52 -52.93 -0.03 1.95 16 11 C -0.18 -7.87 6.94 71.98 0.50 -7.37 16 12 C -0.18 -7.84 7.31 71.98 0.53 -7.31 16 13 C -0.50 -26.86 8.62 25.60 0.22 -26.64 16 14 H 0.05 2.92 7.99 -2.92 -0.02 2.89 16 15 C 0.03 1.43 5.32 84.65 0.45 1.88 16 16 N -0.94 -56.96 13.96 21.45 0.30 -56.66 16 17 Si 0.91 43.69 22.80 68.60 1.56 45.25 16 18 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 19 H -0.31 -14.81 7.11 99.48 0.71 -14.10 16 20 H -0.22 -9.42 4.51 99.48 0.45 -8.97 16 21 N -0.54 -9.28 4.19 -870.42 -3.65 -12.93 16 22 C 0.05 1.04 5.20 86.31 0.45 1.49 16 23 C 0.06 1.13 5.62 86.31 0.49 1.61 16 24 N -0.55 -9.52 4.97 -921.95 -4.58 -14.10 16 25 C 0.02 0.34 9.60 127.69 1.23 1.57 16 26 C 0.06 0.82 5.62 86.31 0.49 1.31 16 27 C 0.06 0.79 5.34 86.31 0.46 1.25 16 28 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 29 H 0.07 0.68 6.36 -2.39 -0.02 0.66 16 30 H 0.06 0.82 6.96 -2.39 -0.02 0.81 16 31 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.07 1.46 6.18 -2.39 -0.01 1.44 16 33 H 0.42 8.81 7.33 -96.74 -0.71 8.10 16 34 H 0.14 4.22 8.14 -2.39 -0.02 4.20 16 35 H 0.14 4.35 8.14 -2.39 -0.02 4.33 16 36 H 0.05 2.07 6.13 -2.39 -0.01 2.05 16 37 H 0.06 2.65 3.95 -2.38 -0.01 2.64 16 38 H 0.06 2.66 8.12 -2.39 -0.02 2.64 16 39 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 40 H 0.04 1.87 2.56 -2.38 -0.01 1.86 16 41 H 0.06 2.52 5.46 -2.39 -0.01 2.51 16 42 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 43 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 44 H 0.08 1.82 6.13 -2.39 -0.01 1.81 16 45 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.08 1.54 8.13 -2.39 -0.02 1.52 16 47 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 48 H 0.07 0.93 8.13 -2.39 -0.02 0.91 16 49 H 0.02 0.33 8.14 -2.39 -0.02 0.31 16 50 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 51 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 52 H 0.10 1.07 6.18 -2.39 -0.01 1.06 16 53 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -70.47 390.72 -5.36 -75.83 By element: Atomic # 1 Polarization: 29.22 SS G_CDS: -0.07 Total: 29.15 kcal Atomic # 6 Polarization: -53.64 SS G_CDS: 6.31 Total: -47.33 kcal Atomic # 7 Polarization: -100.61 SS G_CDS: -8.95 Total: -109.57 kcal Atomic # 8 Polarization: -72.33 SS G_CDS: -3.96 Total: -76.29 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.56 Total: 45.25 kcal Atomic # 16 Polarization: 83.21 SS G_CDS: -0.25 Total: 82.95 kcal Total: -70.47 -5.36 -75.83 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413305145.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.062 kcal (2) G-P(sol) polarization free energy of solvation -70.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds