Wall clock time and date at job start Wed Apr 1 2020 06:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46901 * 109.46965 * 2 1 4 4 C 1.46900 * 110.99981 * 66.04861 * 3 2 1 5 5 C 1.53241 * 109.36302 * 172.76059 * 4 3 2 6 6 N 1.47073 * 108.52482 * 53.81227 * 5 4 3 7 7 C 1.34776 * 120.88513 * 128.83765 * 6 5 4 8 8 O 1.21587 * 120.00443 * 174.39207 * 7 6 5 9 9 N 1.34781 * 119.99801 * 354.39178 * 7 6 5 10 10 C 1.46492 * 120.00154 * 185.11305 * 9 7 6 11 11 C 1.50699 * 109.47115 * 179.97438 * 10 9 7 12 12 C 1.38295 * 119.93448 * 269.73191 * 11 10 9 13 13 C 1.38104 * 120.06995 * 179.72693 * 12 11 10 14 14 C 1.38879 * 119.92808 * 0.56774 * 13 12 11 15 15 O 1.35748 * 120.06957 * 179.68447 * 14 13 12 16 16 C 1.34828 * 117.00439 * 185.75262 * 15 14 13 17 17 H 1.08009 * 119.99601 * 354.91881 * 16 15 14 18 18 C 1.38653 * 120.00631 * 174.92001 * 16 15 14 19 19 N 1.31563 * 119.99314 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00165 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47143 * 90.00018 * 20 18 16 22 22 H 1.48495 * 109.47057 * 209.99818 * 20 18 16 23 23 H 1.48500 * 109.47342 * 330.00080 * 20 18 16 24 24 C 1.38882 * 119.86134 * 359.70439 * 14 13 12 25 25 C 1.38096 * 119.93122 * 0.02562 * 24 14 13 26 26 C 1.47086 * 118.23619 * 308.82129 * 6 5 4 27 27 H 1.09002 * 109.62287 * 291.47112 * 26 6 5 28 28 C 1.52999 * 109.62699 * 170.89391 * 26 6 5 29 29 C 1.46895 * 111.02380 * 301.72685 * 3 2 1 30 30 H 1.08999 * 109.47198 * 59.99444 * 1 2 3 31 31 H 1.08997 * 109.47224 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47243 * 300.00272 * 1 2 3 33 33 H 1.08994 * 109.46841 * 240.00314 * 2 1 3 34 34 H 1.09000 * 109.46752 * 119.99931 * 2 1 3 35 35 H 1.08996 * 109.49767 * 52.78268 * 4 3 2 36 36 H 1.09007 * 109.49308 * 292.72914 * 4 3 2 37 37 H 1.09003 * 109.63072 * 173.52797 * 5 4 3 38 38 H 1.09003 * 109.62335 * 293.91012 * 5 4 3 39 39 H 0.97000 * 119.99479 * 5.12178 * 9 7 6 40 40 H 1.08996 * 109.47415 * 300.00374 * 10 9 7 41 41 H 1.09010 * 109.46938 * 60.00403 * 10 9 7 42 42 H 1.08004 * 119.96441 * 359.97438 * 12 11 10 43 43 H 1.07997 * 120.03596 * 180.26885 * 13 12 11 44 44 H 0.97000 * 119.99158 * 180.02562 * 19 18 16 45 45 H 1.07998 * 120.03447 * 179.97438 * 24 14 13 46 46 H 1.08004 * 119.96388 * 180.02562 * 25 24 14 47 47 H 1.09003 * 109.47457 * 68.24252 * 28 26 6 48 48 H 1.09005 * 109.47146 * 188.23903 * 28 26 6 49 49 H 1.09000 * 109.47257 * 308.24012 * 28 26 6 50 50 H 1.09000 * 109.47151 * 67.26840 * 29 3 2 51 51 H 1.09002 * 109.51041 * 307.21688 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6702 2.0669 1.2533 5 6 2.3493 3.4401 1.2911 6 7 1.9938 4.1711 0.0654 7 6 1.5031 5.4249 0.1253 8 8 1.3104 6.0520 -0.8984 9 7 1.2260 5.9837 1.3201 10 6 0.5889 7.3014 1.3824 11 6 0.3894 7.6952 2.8233 12 6 -0.7834 7.3590 3.4745 13 6 -0.9669 7.7136 4.7966 14 6 0.0229 8.4189 5.4686 15 8 -0.1571 8.7745 6.7662 16 6 0.7879 9.5587 7.3229 17 1 1.6796 9.8075 6.7664 18 6 0.6153 10.0456 8.6096 19 7 -0.4710 9.7428 9.2871 20 14 1.9250 11.1314 9.3809 21 1 1.6344 12.5542 9.0702 22 1 1.9256 10.9364 10.8530 23 1 3.2561 10.7669 8.8327 24 6 1.1972 8.7599 4.8101 25 6 1.3770 8.3976 3.4897 26 6 2.1883 3.4976 -1.2277 27 1 3.2542 3.3755 -1.4202 28 6 1.5529 4.3313 -2.3421 29 6 1.5155 2.1222 -1.1663 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.0100 1.4697 2.0994 36 1 0.5890 2.1942 1.3089 37 1 2.0031 3.9960 2.1624 38 1 3.4305 3.3124 1.3441 39 1 1.4486 5.5133 2.1387 40 1 1.2251 8.0362 0.8892 41 1 -0.3776 7.2618 0.8798 42 1 -1.5550 6.8151 2.9498 43 1 -1.8811 7.4470 5.3059 44 1 -0.5920 10.0837 10.1871 45 1 1.9686 9.3087 5.3299 46 1 2.2901 8.6621 2.9772 47 1 2.1155 5.2561 -2.4699 48 1 1.5683 3.7651 -3.2734 49 1 0.5221 4.5667 -2.0771 50 1 0.4365 2.2488 -1.0775 51 1 1.7428 1.5651 -2.0752 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414543632.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:17:44 Heat of formation + Delta-G solvation = -2.446406 kcal Electronic energy + Delta-G solvation = -30473.477213 eV Core-core repulsion = 26374.524349 eV Total energy + Delta-G solvation = -4098.952864 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.81527 -39.22652 -38.63518 -36.93804 -35.32436 -34.80137 -32.74543 -32.27102 -30.90653 -30.28810 -29.63585 -27.97138 -26.19466 -25.81947 -24.68858 -23.57498 -22.36570 -22.06077 -21.06009 -20.60798 -19.54588 -18.10195 -17.88669 -17.03758 -16.52969 -15.99774 -15.75565 -15.64274 -15.05789 -14.85636 -14.75945 -14.63351 -14.38937 -13.99764 -13.88318 -13.83451 -13.63546 -13.27608 -12.91935 -12.83192 -12.78809 -12.58833 -12.47079 -12.31987 -12.13902 -12.00927 -11.68602 -11.58509 -11.40452 -11.38869 -11.26639 -11.06734 -10.94522 -10.78398 -10.69432 -10.49640 -9.44254 -9.37872 -9.04085 -8.91744 -8.81681 -8.45468 -8.29647 -7.34058 -6.54186 -4.13036 2.01166 2.11778 2.68045 3.07781 3.09032 3.13454 3.21190 3.51747 3.88989 3.90713 4.46849 4.50559 4.53632 4.65756 4.79978 4.81219 4.91686 4.98189 4.99915 5.05032 5.08686 5.16196 5.24586 5.32903 5.35120 5.39998 5.44616 5.49750 5.53919 5.58490 5.66308 5.66894 5.80255 5.81567 5.91739 6.07462 6.10851 6.20856 6.34454 6.49500 6.57980 6.59709 6.63890 6.70807 6.79427 6.90021 6.98297 7.14476 7.27058 7.34054 7.70228 7.90604 7.99301 8.65042 8.91271 9.59316 10.63351 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016756 B = 0.002008 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.603569 B =13942.294097 C =14626.279220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.051 3.949 3 N -0.537 5.537 4 C 0.038 3.962 5 C 0.116 3.884 6 N -0.631 5.631 7 C 0.705 3.295 8 O -0.588 6.588 9 N -0.740 5.740 10 C 0.198 3.802 11 C -0.214 4.214 12 C -0.054 4.054 13 C -0.196 4.196 14 C 0.160 3.840 15 O -0.173 6.173 16 C -0.393 4.393 17 H 0.093 0.907 18 C 0.040 3.960 19 N -0.860 5.860 20 Si 0.942 3.058 21 H -0.272 1.272 22 H -0.277 1.277 23 H -0.267 1.267 24 C -0.237 4.237 25 C -0.050 4.050 26 C 0.167 3.833 27 H 0.075 0.925 28 C -0.136 4.136 29 C 0.042 3.958 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.043 0.957 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.394 0.606 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.111 0.889 43 H 0.118 0.882 44 H 0.271 0.729 45 H 0.128 0.872 46 H 0.108 0.892 47 H 0.083 0.917 48 H 0.042 0.958 49 H 0.064 0.936 50 H 0.043 0.957 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.786 -16.807 -17.627 24.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.077 4.077 3 N -0.260 5.260 4 C -0.090 4.090 5 C -0.008 4.008 6 N -0.370 5.370 7 C 0.407 3.593 8 O -0.467 6.467 9 N -0.397 5.397 10 C 0.075 3.925 11 C -0.215 4.215 12 C -0.073 4.073 13 C -0.215 4.215 14 C 0.106 3.894 15 O -0.076 6.076 16 C -0.469 4.469 17 H 0.111 0.889 18 C -0.165 4.165 19 N -0.494 5.494 20 Si 0.767 3.233 21 H -0.198 1.198 22 H -0.202 1.202 23 H -0.191 1.191 24 C -0.256 4.256 25 C -0.069 4.069 26 C 0.063 3.937 27 H 0.093 0.907 28 C -0.194 4.194 29 C -0.086 4.086 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.105 0.895 36 H 0.061 0.939 37 H 0.102 0.898 38 H 0.095 0.905 39 H 0.231 0.769 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.129 0.871 43 H 0.136 0.864 44 H 0.081 0.919 45 H 0.146 0.854 46 H 0.126 0.874 47 H 0.102 0.898 48 H 0.061 0.939 49 H 0.083 0.917 50 H 0.061 0.939 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.853 -16.328 -17.988 24.774 hybrid contribution -0.152 0.248 1.066 1.105 sum 4.701 -16.080 -16.922 23.813 Atomic orbital electron populations 1.22448 0.98095 1.02460 1.02262 1.22172 0.92992 0.89545 1.02976 1.62144 1.59362 1.02194 1.02306 1.22504 0.98759 0.95046 0.92734 1.21707 1.00478 0.91620 0.87037 1.47399 1.68682 1.13794 1.07144 1.15969 0.78134 0.80910 0.84277 1.90932 1.60506 1.62706 1.32512 1.45790 1.65768 1.21510 1.06659 1.19807 0.96928 0.82355 0.93424 1.19232 0.97295 1.09542 0.95462 1.20525 0.95981 0.97427 0.93363 1.20208 0.99681 1.06926 0.94688 1.19438 0.92681 0.92170 0.85145 1.83975 1.46280 1.58795 1.18555 1.21356 0.99516 1.27444 0.98611 0.88920 1.25322 0.97915 0.97627 0.95626 1.70041 1.25534 1.42176 1.11624 0.85691 0.79602 0.79574 0.78471 1.19780 1.20192 1.19133 1.21163 0.99674 1.09051 0.95735 1.20653 0.97063 0.95451 0.93701 1.21143 0.99693 0.90191 0.82682 0.90742 1.22135 1.02690 0.99616 0.94920 1.22633 0.97824 0.94346 0.93844 0.92386 0.91986 0.92448 0.90522 0.90507 0.89459 0.93904 0.89845 0.90549 0.76923 0.91715 0.91940 0.87060 0.86424 0.91883 0.85427 0.87373 0.89824 0.93931 0.91723 0.93904 0.89745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.22 9.22 37.16 0.34 -0.88 16 2 C 0.05 0.32 6.07 -3.82 -0.02 0.29 16 3 N -0.54 -4.18 4.83 -234.32 -1.13 -5.31 16 4 C 0.04 0.30 5.16 -3.70 -0.02 0.28 16 5 C 0.12 1.00 6.60 -3.61 -0.02 0.98 16 6 N -0.63 -6.91 3.01 -170.61 -0.51 -7.43 16 7 C 0.70 9.63 8.08 -86.91 -0.70 8.93 16 8 O -0.59 -9.62 12.07 5.29 0.06 -9.55 16 9 N -0.74 -9.54 5.46 -66.42 -0.36 -9.90 16 10 C 0.20 2.80 5.80 -5.20 -0.03 2.77 16 11 C -0.21 -3.41 5.25 -104.58 -0.55 -3.96 16 12 C -0.05 -0.90 9.69 -39.61 -0.38 -1.29 16 13 C -0.20 -3.90 9.99 -39.39 -0.39 -4.30 16 14 C 0.16 3.69 6.65 -39.11 -0.26 3.43 16 15 O -0.17 -4.78 9.76 0.06 0.00 -4.78 16 16 C -0.39 -10.64 9.49 30.89 0.29 -10.34 16 17 H 0.09 2.31 5.21 -52.48 -0.27 2.04 16 18 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 19 N -0.86 -24.57 13.67 55.48 0.76 -23.82 16 20 Si 0.94 19.96 29.55 -169.99 -5.02 14.94 16 21 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 22 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 23 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 24 C -0.24 -4.87 9.17 -39.40 -0.36 -5.23 16 25 C -0.05 -0.86 9.69 -39.61 -0.38 -1.24 16 26 C 0.17 1.65 3.65 -67.49 -0.25 1.40 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 28 C -0.14 -1.48 7.63 37.16 0.28 -1.19 16 29 C 0.04 0.35 4.23 -3.71 -0.02 0.33 16 30 H 0.06 0.40 6.54 -51.93 -0.34 0.06 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.41 6.72 -51.93 -0.35 0.06 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.44 8.05 -51.93 -0.42 0.02 16 35 H 0.09 0.57 8.04 -51.93 -0.42 0.15 16 36 H 0.04 0.37 6.83 -51.93 -0.35 0.02 16 37 H 0.08 0.68 5.63 -51.93 -0.29 0.39 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.39 4.60 5.96 -40.82 -0.24 4.35 16 40 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 41 H 0.06 0.89 8.08 -51.92 -0.42 0.47 16 42 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 43 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 44 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 45 H 0.13 2.65 5.64 -52.49 -0.30 2.35 16 46 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 47 H 0.08 1.09 6.59 -51.93 -0.34 0.75 16 48 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.06 0.83 6.97 -51.93 -0.36 0.47 16 50 H 0.04 0.40 6.70 -51.93 -0.35 0.05 16 51 H 0.08 0.59 8.11 -51.93 -0.42 0.17 16 LS Contribution 397.89 15.07 6.00 6.00 Total: -1.00 -30.67 397.89 -10.59 -41.26 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -7.81 Total: 7.61 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -2.57 Total: -9.03 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: -1.25 Total: -46.45 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: 0.06 Total: -14.33 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.67 -10.59 -41.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414543632.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.816 kcal (2) G-P(sol) polarization free energy of solvation -30.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds