Wall clock time and date at job start Wed Apr 1 2020 06:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46901 * 109.46965 * 2 1 4 4 C 1.46900 * 110.99981 * 66.04861 * 3 2 1 5 5 C 1.53241 * 109.36302 * 172.76059 * 4 3 2 6 6 N 1.47073 * 108.52482 * 53.81227 * 5 4 3 7 7 C 1.34776 * 120.88513 * 128.83765 * 6 5 4 8 8 O 1.21587 * 120.00443 * 174.39207 * 7 6 5 9 9 N 1.34781 * 119.99801 * 354.39178 * 7 6 5 10 10 C 1.46492 * 120.00154 * 185.11305 * 9 7 6 11 11 C 1.50699 * 109.47115 * 179.97438 * 10 9 7 12 12 C 1.38295 * 119.93448 * 269.73191 * 11 10 9 13 13 C 1.38104 * 120.06995 * 179.72693 * 12 11 10 14 14 C 1.38879 * 119.92808 * 0.56774 * 13 12 11 15 15 O 1.35748 * 120.06957 * 179.68447 * 14 13 12 16 16 C 1.34828 * 117.00439 * 185.75262 * 15 14 13 17 17 H 1.08009 * 119.99601 * 354.91881 * 16 15 14 18 18 C 1.38653 * 120.00631 * 174.92001 * 16 15 14 19 19 N 1.31563 * 119.99314 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00165 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47143 * 90.00018 * 20 18 16 22 22 H 1.48495 * 109.47057 * 209.99818 * 20 18 16 23 23 H 1.48500 * 109.47342 * 330.00080 * 20 18 16 24 24 C 1.38882 * 119.86134 * 359.70439 * 14 13 12 25 25 C 1.38096 * 119.93122 * 0.02562 * 24 14 13 26 26 C 1.47086 * 118.23619 * 308.82129 * 6 5 4 27 27 H 1.09002 * 109.62287 * 291.47112 * 26 6 5 28 28 C 1.52999 * 109.62699 * 170.89391 * 26 6 5 29 29 C 1.46895 * 111.02380 * 301.72685 * 3 2 1 30 30 H 1.08999 * 109.47198 * 59.99444 * 1 2 3 31 31 H 1.08997 * 109.47224 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47243 * 300.00272 * 1 2 3 33 33 H 1.08994 * 109.46841 * 240.00314 * 2 1 3 34 34 H 1.09000 * 109.46752 * 119.99931 * 2 1 3 35 35 H 1.08996 * 109.49767 * 52.78268 * 4 3 2 36 36 H 1.09007 * 109.49308 * 292.72914 * 4 3 2 37 37 H 1.09003 * 109.63072 * 173.52797 * 5 4 3 38 38 H 1.09003 * 109.62335 * 293.91012 * 5 4 3 39 39 H 0.97000 * 119.99479 * 5.12178 * 9 7 6 40 40 H 1.08996 * 109.47415 * 300.00374 * 10 9 7 41 41 H 1.09010 * 109.46938 * 60.00403 * 10 9 7 42 42 H 1.08004 * 119.96441 * 359.97438 * 12 11 10 43 43 H 1.07997 * 120.03596 * 180.26885 * 13 12 11 44 44 H 0.97000 * 119.99158 * 180.02562 * 19 18 16 45 45 H 1.07998 * 120.03447 * 179.97438 * 24 14 13 46 46 H 1.08004 * 119.96388 * 180.02562 * 25 24 14 47 47 H 1.09003 * 109.47457 * 68.24252 * 28 26 6 48 48 H 1.09005 * 109.47146 * 188.23903 * 28 26 6 49 49 H 1.09000 * 109.47257 * 308.24012 * 28 26 6 50 50 H 1.09000 * 109.47151 * 67.26840 * 29 3 2 51 51 H 1.09002 * 109.51041 * 307.21688 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6702 2.0669 1.2533 5 6 2.3493 3.4401 1.2911 6 7 1.9938 4.1711 0.0654 7 6 1.5031 5.4249 0.1253 8 8 1.3104 6.0520 -0.8984 9 7 1.2260 5.9837 1.3201 10 6 0.5889 7.3014 1.3824 11 6 0.3894 7.6952 2.8233 12 6 -0.7834 7.3590 3.4745 13 6 -0.9669 7.7136 4.7966 14 6 0.0229 8.4189 5.4686 15 8 -0.1571 8.7745 6.7662 16 6 0.7879 9.5587 7.3229 17 1 1.6796 9.8075 6.7664 18 6 0.6153 10.0456 8.6096 19 7 -0.4710 9.7428 9.2871 20 14 1.9250 11.1314 9.3809 21 1 1.6344 12.5542 9.0702 22 1 1.9256 10.9364 10.8530 23 1 3.2561 10.7669 8.8327 24 6 1.1972 8.7599 4.8101 25 6 1.3770 8.3976 3.4897 26 6 2.1883 3.4976 -1.2277 27 1 3.2542 3.3755 -1.4202 28 6 1.5529 4.3313 -2.3421 29 6 1.5155 2.1222 -1.1663 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.0100 1.4697 2.0994 36 1 0.5890 2.1942 1.3089 37 1 2.0031 3.9960 2.1624 38 1 3.4305 3.3124 1.3441 39 1 1.4486 5.5133 2.1387 40 1 1.2251 8.0362 0.8892 41 1 -0.3776 7.2618 0.8798 42 1 -1.5550 6.8151 2.9498 43 1 -1.8811 7.4470 5.3059 44 1 -0.5920 10.0837 10.1871 45 1 1.9686 9.3087 5.3299 46 1 2.2901 8.6621 2.9772 47 1 2.1155 5.2561 -2.4699 48 1 1.5683 3.7651 -3.2734 49 1 0.5221 4.5667 -2.0771 50 1 0.4365 2.2488 -1.0775 51 1 1.7428 1.5651 -2.0752 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414543632.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:17:43 Heat of formation + Delta-G solvation = -22.276669 kcal Electronic energy + Delta-G solvation = -30474.337118 eV Core-core repulsion = 26374.524349 eV Total energy + Delta-G solvation = -4099.812769 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.74269 -40.81872 -39.52329 -38.50484 -36.19147 -35.93246 -34.33607 -33.48821 -31.85102 -31.67193 -30.86224 -28.77323 -27.63473 -26.86762 -26.10498 -24.21573 -23.64915 -23.25690 -22.10321 -21.79729 -20.46808 -19.87057 -18.98351 -18.63281 -17.51000 -16.91170 -16.52106 -16.39856 -16.32865 -16.26504 -15.99289 -15.75459 -15.55690 -15.49645 -15.18456 -14.89351 -14.59578 -14.46912 -14.38188 -14.16622 -13.64418 -13.59180 -13.38988 -13.28481 -13.14465 -13.02455 -12.90090 -12.81737 -12.52869 -12.36446 -12.34100 -12.21707 -12.11317 -12.03075 -11.99157 -11.62050 -11.20671 -10.82394 -10.41846 -10.10034 -9.81869 -9.61643 -9.19237 -9.01719 -8.48510 -6.16557 0.52344 0.57253 1.36007 1.43850 1.52862 1.70709 2.17006 2.17168 2.74015 2.90972 3.00185 3.20960 3.48822 3.81868 3.85361 3.90127 4.01998 4.03331 4.16987 4.18653 4.21184 4.26483 4.33506 4.42142 4.47018 4.52533 4.56429 4.63877 4.71777 4.73316 4.76128 4.81239 4.86724 4.91832 5.02213 5.02352 5.03843 5.14270 5.20860 5.26162 5.31047 5.31636 5.51626 5.55809 5.67790 5.69281 5.75626 5.90656 6.01304 6.03290 6.12378 6.15554 6.96437 6.99130 7.60896 7.75539 8.74271 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016756 B = 0.002008 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.603569 B =13942.294097 C =14626.279220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.052 3.948 3 N -0.541 5.541 4 C 0.042 3.958 5 C 0.113 3.887 6 N -0.629 5.629 7 C 0.701 3.299 8 O -0.617 6.617 9 N -0.735 5.735 10 C 0.205 3.795 11 C -0.181 4.181 12 C -0.043 4.043 13 C -0.204 4.204 14 C 0.123 3.877 15 O -0.228 6.228 16 C -0.413 4.413 17 H 0.104 0.896 18 C -0.022 4.022 19 N -0.919 5.919 20 Si 1.017 2.983 21 H -0.265 1.265 22 H -0.272 1.272 23 H -0.252 1.252 24 C -0.243 4.243 25 C -0.045 4.045 26 C 0.164 3.836 27 H 0.080 0.920 28 C -0.125 4.125 29 C 0.051 3.949 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.046 0.954 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.033 0.967 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.402 0.598 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.145 0.855 43 H 0.115 0.885 44 H 0.273 0.727 45 H 0.121 0.879 46 H 0.138 0.862 47 H 0.059 0.941 48 H 0.065 0.935 49 H 0.041 0.959 50 H 0.031 0.969 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.424 -18.365 -19.849 27.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.076 4.076 3 N -0.264 5.264 4 C -0.087 4.087 5 C -0.010 4.010 6 N -0.366 5.366 7 C 0.403 3.597 8 O -0.499 6.499 9 N -0.393 5.393 10 C 0.082 3.918 11 C -0.182 4.182 12 C -0.061 4.061 13 C -0.223 4.223 14 C 0.072 3.928 15 O -0.134 6.134 16 C -0.489 4.489 17 H 0.121 0.879 18 C -0.220 4.220 19 N -0.556 5.556 20 Si 0.837 3.163 21 H -0.190 1.190 22 H -0.197 1.197 23 H -0.175 1.175 24 C -0.262 4.262 25 C -0.063 4.063 26 C 0.060 3.940 27 H 0.098 0.902 28 C -0.183 4.183 29 C -0.078 4.078 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.065 0.935 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.121 0.879 36 H 0.051 0.949 37 H 0.106 0.894 38 H 0.103 0.897 39 H 0.240 0.760 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.163 0.837 43 H 0.133 0.867 44 H 0.082 0.918 45 H 0.138 0.862 46 H 0.155 0.845 47 H 0.078 0.922 48 H 0.084 0.916 49 H 0.060 0.940 50 H 0.050 0.950 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.512 -17.944 -20.259 27.835 hybrid contribution -0.678 0.533 1.359 1.609 sum 5.834 -17.411 -18.900 26.351 Atomic orbital electron populations 1.22402 0.98229 1.02813 1.01385 1.22230 0.92786 0.88644 1.03894 1.62169 1.59410 1.02837 1.02005 1.22488 0.98040 0.94764 0.93432 1.21871 1.01092 0.91929 0.86131 1.47475 1.67713 1.13030 1.08424 1.16087 0.78208 0.81579 0.83813 1.90932 1.61770 1.63723 1.33441 1.45557 1.65745 1.21041 1.06979 1.19678 0.97535 0.83102 0.91512 1.19492 0.96094 1.06594 0.96065 1.20850 0.96959 0.96421 0.91902 1.20433 0.99171 1.06703 0.95974 1.19981 0.94569 0.93599 0.84627 1.83946 1.47519 1.61080 1.20893 1.21827 1.00031 1.27770 0.99266 0.87917 1.26576 1.00393 0.99058 0.95943 1.70182 1.28289 1.44885 1.12283 0.84599 0.76910 0.77403 0.77418 1.18973 1.19653 1.17541 1.21238 0.98748 1.09163 0.97037 1.20929 0.98437 0.94644 0.92322 1.21254 1.00079 0.90771 0.81884 0.90185 1.21950 1.00783 0.99085 0.96473 1.22533 0.96848 0.93561 0.94882 0.93088 0.91036 0.93452 0.89565 0.89678 0.87893 0.94914 0.89380 0.89735 0.76044 0.91536 0.91389 0.83715 0.86668 0.91809 0.86166 0.84470 0.92225 0.91613 0.93982 0.95030 0.88125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.00 9.22 71.98 0.66 -1.34 16 2 C 0.05 0.51 6.07 86.30 0.52 1.03 16 3 N -0.54 -6.98 4.83 -895.27 -4.32 -11.31 16 4 C 0.04 0.54 5.16 86.38 0.45 0.99 16 5 C 0.11 1.67 6.60 86.35 0.57 2.24 16 6 N -0.63 -12.50 3.01 -811.95 -2.44 -14.95 16 7 C 0.70 17.81 8.08 179.05 1.45 19.26 16 8 O -0.62 -19.45 12.07 -3.99 -0.05 -19.50 16 9 N -0.74 -16.95 5.46 -482.30 -2.64 -19.58 16 10 C 0.21 5.16 5.80 85.63 0.50 5.65 16 11 C -0.18 -5.25 5.25 -19.84 -0.10 -5.35 16 12 C -0.04 -1.33 9.69 22.25 0.22 -1.11 16 13 C -0.20 -8.12 9.99 22.39 0.22 -7.89 16 14 C 0.12 5.83 6.65 22.58 0.15 5.98 16 15 O -0.23 -13.28 9.76 -22.70 -0.22 -13.50 16 16 C -0.41 -23.33 9.49 67.92 0.64 -22.69 16 17 H 0.10 5.30 5.21 -2.91 -0.02 5.28 16 18 C -0.02 -1.21 5.49 84.83 0.47 -0.75 16 19 N -0.92 -55.28 13.67 21.61 0.30 -54.99 16 20 Si 1.02 41.85 29.55 68.60 2.03 43.88 16 21 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 22 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 23 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 24 C -0.24 -9.94 9.17 22.39 0.21 -9.73 16 25 C -0.04 -1.44 9.69 22.25 0.22 -1.22 16 26 C 0.16 2.92 3.65 44.96 0.16 3.08 16 27 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 28 C -0.13 -2.57 7.63 71.98 0.55 -2.02 16 29 C 0.05 0.71 4.23 86.38 0.37 1.08 16 30 H 0.05 0.61 6.54 -2.39 -0.02 0.59 16 31 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.05 0.60 6.72 -2.38 -0.02 0.58 16 33 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.08 0.72 8.05 -2.39 -0.02 0.70 16 35 H 0.10 1.04 8.04 -2.39 -0.02 1.02 16 36 H 0.03 0.51 6.83 -2.38 -0.02 0.49 16 37 H 0.09 1.21 5.63 -2.39 -0.01 1.19 16 38 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.40 8.16 5.96 -92.71 -0.55 7.61 16 40 H 0.07 1.73 8.08 -2.39 -0.02 1.71 16 41 H 0.07 1.71 8.08 -2.38 -0.02 1.69 16 42 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 43 H 0.12 4.57 8.06 -2.91 -0.02 4.55 16 44 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 45 H 0.12 5.05 5.64 -2.91 -0.02 5.03 16 46 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 47 H 0.06 1.52 6.59 -2.39 -0.02 1.50 16 48 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 49 H 0.04 1.05 6.97 -2.39 -0.02 1.03 16 50 H 0.03 0.53 6.70 -2.39 -0.02 0.51 16 51 H 0.10 1.10 8.11 -2.39 -0.02 1.08 16 Total: -1.00 -70.87 397.89 0.29 -70.59 By element: Atomic # 1 Polarization: 31.76 SS G_CDS: 0.39 Total: 32.16 kcal Atomic # 6 Polarization: -20.04 SS G_CDS: 7.24 Total: -12.79 kcal Atomic # 7 Polarization: -91.72 SS G_CDS: -9.11 Total: -100.83 kcal Atomic # 8 Polarization: -32.73 SS G_CDS: -0.27 Total: -33.00 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -70.87 0.29 -70.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414543632.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.311 kcal (2) G-P(sol) polarization free energy of solvation -70.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds