Wall clock time and date at job start Wed Apr 1 2020 05:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46912 * 2 1 4 4 O 1.42890 * 109.47114 * 239.99774 * 2 1 3 5 5 C 1.42907 * 113.99967 * 90.00046 * 4 2 1 6 6 C 1.50698 * 109.46764 * 179.97438 * 5 4 2 7 7 C 1.38660 * 120.78840 * 90.00644 * 6 5 4 8 8 C 1.38205 * 119.16082 * 179.97438 * 7 6 5 9 9 N 1.31867 * 120.76614 * 359.97438 * 8 7 6 10 10 C 1.31874 * 121.72561 * 359.97438 * 9 8 7 11 11 C 1.38201 * 120.76346 * 0.02785 * 10 9 8 12 12 C 1.50700 * 109.46819 * 119.99791 * 2 1 3 13 13 O 1.21280 * 119.99854 * 120.00604 * 12 2 1 14 14 N 1.34774 * 120.00081 * 299.99497 * 12 2 1 15 15 C 1.46504 * 119.99953 * 179.97438 * 14 12 2 16 16 C 1.52997 * 109.46956 * 180.02562 * 15 14 12 17 17 H 1.08999 * 110.02359 * 305.06374 * 16 15 14 18 18 C 1.53880 * 110.03073 * 66.46011 * 16 15 14 19 19 C 1.54264 * 106.59977 * 119.28353 * 18 16 15 20 20 C 1.54887 * 104.19749 * 23.60781 * 19 18 16 21 21 H 1.08999 * 110.75568 * 80.55774 * 20 19 18 22 22 N 1.46506 * 110.75813 * 203.74546 * 20 19 18 23 23 C 1.36932 * 119.99748 * 273.54681 * 22 20 19 24 24 H 1.08001 * 120.00579 * 0.02562 * 23 22 20 25 25 C 1.38818 * 120.00004 * 179.97438 * 23 22 20 26 26 N 1.31618 * 119.99761 * 359.97438 * 25 23 22 27 27 Si 1.86793 * 120.00052 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.47579 * 60.00027 * 27 25 23 29 29 H 1.48508 * 109.47081 * 179.97438 * 27 25 23 30 30 H 1.48506 * 109.47378 * 299.99871 * 27 25 23 31 31 C 1.54272 * 110.03042 * 183.62148 * 16 15 14 32 32 H 1.08989 * 109.47305 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.46772 * 300.00734 * 1 2 3 34 34 H 1.09002 * 109.46809 * 59.99539 * 1 2 3 35 35 H 1.09005 * 109.46908 * 60.00323 * 5 4 2 36 36 H 1.08992 * 109.47293 * 299.99951 * 5 4 2 37 37 H 1.07995 * 120.41642 * 0.24421 * 7 6 5 38 38 H 1.07995 * 119.61248 * 179.97438 * 8 7 6 39 39 H 1.08001 * 119.61619 * 180.02562 * 10 9 8 40 40 H 1.08004 * 120.41673 * 179.97438 * 11 10 9 41 41 H 0.96999 * 120.00005 * 0.02562 * 14 12 2 42 42 H 1.08997 * 109.47613 * 300.00504 * 15 14 12 43 43 H 1.09004 * 109.46725 * 60.00831 * 15 14 12 44 44 H 1.09004 * 110.02973 * 238.56478 * 18 16 15 45 45 H 1.08997 * 110.03063 * 359.95051 * 18 16 15 46 46 H 1.08998 * 110.49089 * 142.29012 * 19 18 16 47 47 H 1.09002 * 110.48428 * 264.92905 * 19 18 16 48 48 H 0.96998 * 120.00169 * 93.54943 * 22 20 19 49 49 H 0.96997 * 120.00107 * 179.97438 * 26 25 23 50 50 H 1.08999 * 110.48720 * 335.78589 * 31 16 15 51 51 H 1.08997 * 110.48385 * 98.43112 * 31 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.2001 0.1829 -2.2940 6 6 2.7015 -0.6283 -3.4609 7 6 1.8147 -1.2092 -4.3547 8 6 2.3113 -1.9459 -5.4133 9 7 3.6107 -2.0985 -5.5782 10 6 4.4830 -1.5597 -4.7488 11 6 4.0604 -0.8099 -3.6675 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6964 1.1193 14 7 1.7068 -0.2498 2.4546 15 6 2.1946 -0.9408 3.6508 16 6 1.6842 -0.2197 4.9000 17 1 1.9671 0.8324 4.8653 18 6 0.1541 -0.3513 4.9964 19 6 -0.1423 -1.0893 6.3182 20 6 1.1063 -0.8173 7.1934 21 1 1.0486 0.1695 7.6527 22 7 1.2600 -1.8555 8.2157 23 6 0.6096 -1.7371 9.4148 24 1 -0.0170 -0.8787 9.6069 25 6 0.7548 -2.7210 10.3833 26 7 1.5172 -3.7679 10.1486 27 14 -0.1319 -2.5592 12.0193 28 1 -1.5971 -2.5003 11.7847 29 1 0.1854 -3.7326 12.8725 30 1 0.3105 -1.3165 12.7014 31 6 2.2642 -0.8824 6.1666 32 1 -0.3633 -1.0275 0.0005 33 1 -0.3633 0.5140 0.8900 34 1 -0.3633 0.5139 -0.8900 35 1 2.9321 0.9513 -2.0450 36 1 1.2539 0.6546 -2.5588 37 1 0.7496 -1.0839 -4.2276 38 1 1.6272 -2.4019 -6.1136 39 1 5.5398 -1.7061 -4.9165 40 1 4.7796 -0.3715 -2.9915 41 1 1.1489 0.5387 2.5435 42 1 1.8309 -1.9683 3.6507 43 1 3.2846 -0.9412 3.6510 44 1 -0.3055 0.6370 5.0093 45 1 -0.2249 -0.9282 4.1527 46 1 -1.0357 -0.6813 6.7909 47 1 -0.2581 -2.1585 6.1405 48 1 1.8225 -2.6266 8.0430 49 1 1.6190 -4.4552 10.8254 50 1 2.5370 -1.9181 5.9645 51 1 3.1270 -0.3233 6.5287 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479475133.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:49 Heat of formation + Delta-G solvation = -46.807434 kcal Electronic energy + Delta-G solvation = -29144.073230 eV Core-core repulsion = 25043.196727 eV Total energy + Delta-G solvation = -4100.876503 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.66508 -40.17539 -38.52363 -37.74926 -34.97925 -33.94552 -33.41480 -31.76467 -31.63106 -30.58333 -28.96398 -27.38043 -27.30928 -25.11391 -23.90056 -23.65896 -23.05630 -22.45285 -20.73307 -19.71872 -19.41921 -17.94301 -17.54524 -17.10787 -16.94858 -16.78602 -16.16591 -16.03589 -15.48733 -15.45658 -15.04917 -14.72963 -14.38014 -14.21260 -14.06254 -13.85420 -13.64133 -13.34444 -13.20294 -12.99433 -12.86713 -12.67446 -12.46091 -12.17987 -12.00020 -11.87900 -11.73130 -11.15010 -10.89259 -10.78870 -10.61427 -10.57822 -10.44286 -10.30872 -10.19923 -10.18087 -9.92452 -9.90859 -9.71191 -9.62897 -9.56277 -9.18672 -8.87416 -6.94658 -5.76483 -3.05253 0.68475 0.72465 2.40843 2.60172 3.30385 3.43465 3.47905 3.49137 3.63572 4.05743 4.16739 4.20539 4.36379 4.45246 4.56032 4.58193 4.58804 4.68609 4.78194 4.80259 4.86504 4.89702 5.02558 5.09424 5.18047 5.21619 5.35514 5.50409 5.50685 5.51831 5.63516 5.66331 5.70419 5.84793 5.86668 5.94039 5.99516 6.02737 6.18366 6.25606 6.30144 6.32201 6.43457 6.53431 6.55169 6.69669 6.85284 7.10549 7.30974 7.54834 7.69684 8.04629 8.42361 9.53109 10.12009 10.46025 11.46089 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.028970 B = 0.001448 C = 0.001422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.274659 B =19336.175368 C =19685.151027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.071 3.929 3 H 0.088 0.912 4 O -0.348 6.348 5 C 0.098 3.902 6 C -0.045 4.045 7 C -0.152 4.152 8 C 0.095 3.905 9 N -0.482 5.482 10 C 0.097 3.903 11 C -0.149 4.149 12 C 0.510 3.490 13 O -0.518 6.518 14 N -0.724 5.724 15 C 0.127 3.873 16 C -0.100 4.100 17 H 0.074 0.926 18 C -0.120 4.120 19 C -0.144 4.144 20 C 0.177 3.823 21 H 0.052 0.948 22 N -0.721 5.721 23 C -0.241 4.241 24 H 0.069 0.931 25 C -0.013 4.013 26 N -0.933 5.933 27 Si 0.907 3.093 28 H -0.286 1.286 29 H -0.291 1.291 30 H -0.286 1.286 31 C -0.122 4.122 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.136 0.864 38 H 0.158 0.842 39 H 0.158 0.842 40 H 0.137 0.863 41 H 0.399 0.601 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.057 0.943 45 H 0.058 0.942 46 H 0.055 0.945 47 H 0.063 0.937 48 H 0.384 0.616 49 H 0.256 0.744 50 H 0.070 0.930 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.091 13.522 -30.330 33.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.009 3.991 3 H 0.106 0.894 4 O -0.266 6.266 5 C 0.022 3.978 6 C -0.053 4.053 7 C -0.171 4.171 8 C -0.061 4.061 9 N -0.192 5.192 10 C -0.060 4.060 11 C -0.169 4.169 12 C 0.294 3.706 13 O -0.392 6.392 14 N -0.378 5.378 15 C 0.004 3.996 16 C -0.119 4.119 17 H 0.092 0.908 18 C -0.159 4.159 19 C -0.184 4.184 20 C 0.066 3.934 21 H 0.070 0.930 22 N -0.361 5.361 23 C -0.372 4.372 24 H 0.087 0.913 25 C -0.209 4.209 26 N -0.581 5.581 27 Si 0.738 3.262 28 H -0.213 1.213 29 H -0.217 1.217 30 H -0.213 1.213 31 C -0.160 4.160 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.154 0.846 38 H 0.175 0.825 39 H 0.176 0.824 40 H 0.155 0.845 41 H 0.234 0.766 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.074 0.926 47 H 0.082 0.918 48 H 0.218 0.782 49 H 0.066 0.934 50 H 0.089 0.911 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.691 12.123 -30.939 33.236 hybrid contribution -1.035 0.922 1.685 2.181 sum -0.344 13.045 -29.254 32.033 Atomic orbital electron populations 1.22260 0.93319 1.04169 1.03233 1.21938 0.95226 0.96325 0.85582 0.89402 1.88141 1.86582 1.33484 1.18420 1.21423 1.00132 0.91641 0.84601 1.19948 0.93714 0.96883 0.94757 1.22089 1.00997 0.98257 0.95798 1.22791 0.91989 0.95308 0.96042 1.67679 1.03409 1.19443 1.28637 1.22805 0.99794 0.92956 0.90435 1.22120 0.95861 0.99866 0.99052 1.20291 0.80884 0.85136 0.84259 1.90756 1.36626 1.25397 1.86442 1.45992 1.54005 1.32303 1.05463 1.21592 0.99104 0.96529 0.82341 1.21962 0.96470 0.99551 0.93951 0.90804 1.22216 0.94302 1.00226 0.99122 1.23073 1.00768 1.00083 0.94523 1.21157 0.90941 0.93079 0.88188 0.92960 1.42378 1.57042 1.23343 1.13338 1.19200 1.21806 1.04608 0.91586 0.91268 1.24747 1.00430 0.97116 0.98635 1.69649 1.42414 1.11246 1.34778 0.86279 0.79261 0.76822 0.83876 1.21314 1.21697 1.21285 1.22572 0.98921 1.00803 0.93753 0.90823 0.90643 0.91204 0.91687 0.91624 0.84577 0.82506 0.82447 0.84508 0.76648 0.91011 0.91434 0.92451 0.92371 0.92607 0.91800 0.78181 0.93448 0.91146 0.91717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.00 9.42 37.16 0.35 -0.65 16 2 C 0.07 0.56 3.14 -27.88 -0.09 0.47 16 3 H 0.09 0.44 7.79 -51.93 -0.40 0.03 16 4 O -0.35 -3.52 9.50 -55.14 -0.52 -4.05 16 5 C 0.10 0.65 5.92 36.00 0.21 0.86 16 6 C -0.04 -0.35 5.55 -104.32 -0.58 -0.93 16 7 C -0.15 -1.08 9.82 -39.44 -0.39 -1.47 16 8 C 0.10 0.74 11.18 -17.55 -0.20 0.54 16 9 N -0.48 -4.59 10.36 -13.25 -0.14 -4.73 16 10 C 0.10 0.78 11.18 -17.55 -0.20 0.59 16 11 C -0.15 -1.16 9.82 -39.44 -0.39 -1.54 16 12 C 0.51 5.91 7.23 -10.99 -0.08 5.83 16 13 O -0.52 -8.70 16.50 -14.35 -0.24 -8.93 16 14 N -0.72 -6.90 5.19 -60.29 -0.31 -7.21 16 15 C 0.13 1.51 4.70 -4.04 -0.02 1.49 16 16 C -0.10 -1.17 2.98 -89.50 -0.27 -1.44 16 17 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 18 C -0.12 -1.47 6.13 -25.61 -0.16 -1.63 16 19 C -0.14 -2.43 6.51 -25.07 -0.16 -2.59 16 20 C 0.18 3.37 3.54 -65.93 -0.23 3.14 16 21 H 0.05 1.01 8.12 -51.93 -0.42 0.59 16 22 N -0.72 -17.86 5.25 -51.49 -0.27 -18.13 16 23 C -0.24 -6.63 9.98 -15.06 -0.15 -6.78 16 24 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 25 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 26 N -0.93 -28.18 13.06 55.49 0.72 -27.46 16 27 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 28 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 29 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 30 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 31 C -0.12 -1.88 5.96 -25.07 -0.15 -2.02 16 32 H 0.07 0.56 8.14 -51.94 -0.42 0.14 16 33 H 0.07 0.32 7.56 -51.93 -0.39 -0.07 16 34 H 0.07 0.29 7.87 -51.93 -0.41 -0.12 16 35 H 0.06 0.33 8.04 -51.93 -0.42 -0.09 16 36 H 0.07 0.29 7.83 -51.93 -0.41 -0.12 16 37 H 0.14 0.67 8.06 -52.49 -0.42 0.24 16 38 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 41 H 0.40 2.59 7.73 -40.82 -0.32 2.27 16 42 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.68 7.58 -51.93 -0.39 0.28 16 46 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 48 H 0.38 10.17 7.72 -40.82 -0.32 9.86 16 49 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 50 H 0.07 1.16 7.73 -51.93 -0.40 0.76 16 51 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 420.78 15.07 6.34 6.34 Total: -1.00 -35.90 420.78 -10.52 -46.42 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -8.50 Total: 7.10 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -2.58 Total: -6.61 kcal Atomic # 7 Polarization: -57.53 SS G_CDS: 0.00 Total: -57.53 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: -0.76 Total: -12.98 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -35.90 -10.52 -46.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479475133.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.390 kcal (2) G-P(sol) polarization free energy of solvation -35.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds