Wall clock time and date at job start Wed Apr 1 2020 05:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46912 * 2 1 4 4 O 1.42890 * 109.47114 * 239.99774 * 2 1 3 5 5 C 1.42907 * 113.99967 * 90.00046 * 4 2 1 6 6 C 1.50698 * 109.46764 * 179.97438 * 5 4 2 7 7 C 1.38660 * 120.78840 * 90.00644 * 6 5 4 8 8 C 1.38205 * 119.16082 * 179.97438 * 7 6 5 9 9 N 1.31867 * 120.76614 * 359.97438 * 8 7 6 10 10 C 1.31874 * 121.72561 * 359.97438 * 9 8 7 11 11 C 1.38201 * 120.76346 * 0.02785 * 10 9 8 12 12 C 1.50700 * 109.46819 * 119.99791 * 2 1 3 13 13 O 1.21280 * 119.99854 * 120.00604 * 12 2 1 14 14 N 1.34774 * 120.00081 * 299.99497 * 12 2 1 15 15 C 1.46504 * 119.99953 * 179.97438 * 14 12 2 16 16 C 1.52997 * 109.46956 * 180.02562 * 15 14 12 17 17 H 1.08999 * 110.02359 * 305.06374 * 16 15 14 18 18 C 1.53880 * 110.03073 * 66.46011 * 16 15 14 19 19 C 1.54264 * 106.59977 * 119.28353 * 18 16 15 20 20 C 1.54887 * 104.19749 * 23.60781 * 19 18 16 21 21 H 1.08999 * 110.75568 * 80.55774 * 20 19 18 22 22 N 1.46506 * 110.75813 * 203.74546 * 20 19 18 23 23 C 1.36932 * 119.99748 * 273.54681 * 22 20 19 24 24 H 1.08001 * 120.00579 * 0.02562 * 23 22 20 25 25 C 1.38818 * 120.00004 * 179.97438 * 23 22 20 26 26 N 1.31618 * 119.99761 * 359.97438 * 25 23 22 27 27 Si 1.86793 * 120.00052 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.47579 * 60.00027 * 27 25 23 29 29 H 1.48508 * 109.47081 * 179.97438 * 27 25 23 30 30 H 1.48506 * 109.47378 * 299.99871 * 27 25 23 31 31 C 1.54272 * 110.03042 * 183.62148 * 16 15 14 32 32 H 1.08989 * 109.47305 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.46772 * 300.00734 * 1 2 3 34 34 H 1.09002 * 109.46809 * 59.99539 * 1 2 3 35 35 H 1.09005 * 109.46908 * 60.00323 * 5 4 2 36 36 H 1.08992 * 109.47293 * 299.99951 * 5 4 2 37 37 H 1.07995 * 120.41642 * 0.24421 * 7 6 5 38 38 H 1.07995 * 119.61248 * 179.97438 * 8 7 6 39 39 H 1.08001 * 119.61619 * 180.02562 * 10 9 8 40 40 H 1.08004 * 120.41673 * 179.97438 * 11 10 9 41 41 H 0.96999 * 120.00005 * 0.02562 * 14 12 2 42 42 H 1.08997 * 109.47613 * 300.00504 * 15 14 12 43 43 H 1.09004 * 109.46725 * 60.00831 * 15 14 12 44 44 H 1.09004 * 110.02973 * 238.56478 * 18 16 15 45 45 H 1.08997 * 110.03063 * 359.95051 * 18 16 15 46 46 H 1.08998 * 110.49089 * 142.29012 * 19 18 16 47 47 H 1.09002 * 110.48428 * 264.92905 * 19 18 16 48 48 H 0.96998 * 120.00169 * 93.54943 * 22 20 19 49 49 H 0.96997 * 120.00107 * 179.97438 * 26 25 23 50 50 H 1.08999 * 110.48720 * 335.78589 * 31 16 15 51 51 H 1.08997 * 110.48385 * 98.43112 * 31 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.2001 0.1829 -2.2940 6 6 2.7015 -0.6283 -3.4609 7 6 1.8147 -1.2092 -4.3547 8 6 2.3113 -1.9459 -5.4133 9 7 3.6107 -2.0985 -5.5782 10 6 4.4830 -1.5597 -4.7488 11 6 4.0604 -0.8099 -3.6675 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6964 1.1193 14 7 1.7068 -0.2498 2.4546 15 6 2.1946 -0.9408 3.6508 16 6 1.6842 -0.2197 4.9000 17 1 1.9671 0.8324 4.8653 18 6 0.1541 -0.3513 4.9964 19 6 -0.1423 -1.0893 6.3182 20 6 1.1063 -0.8173 7.1934 21 1 1.0486 0.1695 7.6527 22 7 1.2600 -1.8555 8.2157 23 6 0.6096 -1.7371 9.4148 24 1 -0.0170 -0.8787 9.6069 25 6 0.7548 -2.7210 10.3833 26 7 1.5172 -3.7679 10.1486 27 14 -0.1319 -2.5592 12.0193 28 1 -1.5971 -2.5003 11.7847 29 1 0.1854 -3.7326 12.8725 30 1 0.3105 -1.3165 12.7014 31 6 2.2642 -0.8824 6.1666 32 1 -0.3633 -1.0275 0.0005 33 1 -0.3633 0.5140 0.8900 34 1 -0.3633 0.5139 -0.8900 35 1 2.9321 0.9513 -2.0450 36 1 1.2539 0.6546 -2.5588 37 1 0.7496 -1.0839 -4.2276 38 1 1.6272 -2.4019 -6.1136 39 1 5.5398 -1.7061 -4.9165 40 1 4.7796 -0.3715 -2.9915 41 1 1.1489 0.5387 2.5435 42 1 1.8309 -1.9683 3.6507 43 1 3.2846 -0.9412 3.6510 44 1 -0.3055 0.6370 5.0093 45 1 -0.2249 -0.9282 4.1527 46 1 -1.0357 -0.6813 6.7909 47 1 -0.2581 -2.1585 6.1405 48 1 1.8225 -2.6266 8.0430 49 1 1.6190 -4.4552 10.8254 50 1 2.5370 -1.9181 5.9645 51 1 3.1270 -0.3233 6.5287 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479475133.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:47 Heat of formation + Delta-G solvation = -70.951903 kcal Electronic energy + Delta-G solvation = -29145.120213 eV Core-core repulsion = 25043.196727 eV Total energy + Delta-G solvation = -4101.923485 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -41.27826 -40.95834 -39.57985 -38.61459 -36.32466 -35.06739 -34.42856 -32.81870 -32.16035 -31.99194 -30.12928 -28.76180 -27.87377 -26.21966 -25.05604 -24.44336 -24.31313 -22.97474 -21.71363 -20.99675 -20.59549 -19.15352 -18.59139 -18.17953 -17.51945 -17.43397 -17.11490 -16.75599 -16.57378 -16.41937 -16.18963 -15.69707 -15.54137 -15.33630 -14.94557 -14.79766 -14.56550 -14.30841 -14.23295 -14.04071 -13.66432 -13.57809 -13.33483 -13.28295 -12.95649 -12.92632 -12.66696 -12.49809 -12.37833 -12.27393 -12.13872 -11.95092 -11.76780 -11.63517 -11.51646 -11.23337 -11.07919 -10.87492 -10.75954 -10.50092 -10.47689 -10.11403 -10.10311 -8.97249 -7.93221 -5.21434 0.12950 0.18464 1.47063 1.50146 1.56255 1.56717 1.88342 2.57149 2.69895 3.09273 3.39035 3.56110 3.59637 3.70421 3.75498 3.76793 3.80848 3.84221 3.96663 4.09018 4.11213 4.19506 4.31567 4.39167 4.40754 4.43508 4.49522 4.63959 4.66288 4.68970 4.72909 4.79967 4.81107 4.82310 4.87199 4.92692 4.97850 5.10422 5.14490 5.22001 5.24030 5.33270 5.36184 5.46846 5.50796 5.57464 5.65854 5.74380 6.01923 6.29321 6.57730 6.99066 7.24927 7.34451 8.13732 8.34864 9.30382 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.028970 B = 0.001448 C = 0.001422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.274659 B =19336.175368 C =19685.151027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.075 3.925 3 H 0.126 0.874 4 O -0.384 6.384 5 C 0.097 3.903 6 C -0.060 4.060 7 C -0.154 4.154 8 C 0.082 3.918 9 N -0.513 5.513 10 C 0.082 3.918 11 C -0.160 4.160 12 C 0.504 3.496 13 O -0.581 6.581 14 N -0.706 5.706 15 C 0.134 3.866 16 C -0.082 4.082 17 H 0.108 0.892 18 C -0.107 4.107 19 C -0.140 4.140 20 C 0.163 3.837 21 H 0.055 0.945 22 N -0.737 5.737 23 C -0.239 4.239 24 H 0.077 0.923 25 C -0.079 4.079 26 N -0.973 5.973 27 Si 0.973 3.027 28 H -0.278 1.278 29 H -0.298 1.298 30 H -0.276 1.276 31 C -0.117 4.117 32 H 0.049 0.951 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.159 0.841 38 H 0.178 0.822 39 H 0.174 0.826 40 H 0.148 0.852 41 H 0.419 0.581 42 H 0.045 0.955 43 H 0.059 0.941 44 H 0.091 0.909 45 H 0.067 0.933 46 H 0.050 0.950 47 H 0.035 0.965 48 H 0.370 0.630 49 H 0.249 0.751 50 H 0.051 0.949 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.747 16.984 -31.389 35.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.014 3.986 3 H 0.144 0.856 4 O -0.303 6.303 5 C 0.021 3.979 6 C -0.068 4.068 7 C -0.174 4.174 8 C -0.074 4.074 9 N -0.223 5.223 10 C -0.074 4.074 11 C -0.180 4.180 12 C 0.291 3.709 13 O -0.460 6.460 14 N -0.360 5.360 15 C 0.010 3.990 16 C -0.101 4.101 17 H 0.126 0.874 18 C -0.145 4.145 19 C -0.180 4.180 20 C 0.055 3.945 21 H 0.073 0.927 22 N -0.376 5.376 23 C -0.371 4.371 24 H 0.095 0.905 25 C -0.271 4.271 26 N -0.623 5.623 27 Si 0.802 3.198 28 H -0.204 1.204 29 H -0.224 1.224 30 H -0.202 1.202 31 C -0.156 4.156 32 H 0.068 0.932 33 H 0.115 0.885 34 H 0.112 0.888 35 H 0.099 0.901 36 H 0.111 0.889 37 H 0.177 0.823 38 H 0.195 0.805 39 H 0.191 0.809 40 H 0.166 0.834 41 H 0.257 0.743 42 H 0.064 0.936 43 H 0.077 0.923 44 H 0.109 0.891 45 H 0.086 0.914 46 H 0.069 0.931 47 H 0.054 0.946 48 H 0.202 0.798 49 H 0.058 0.942 50 H 0.069 0.931 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.015 15.684 -32.027 35.675 hybrid contribution -0.513 -0.127 1.961 2.031 sum -1.528 15.556 -30.065 33.886 Atomic orbital electron populations 1.22279 0.91456 1.03316 1.05488 1.22060 0.96379 0.97020 0.83122 0.85648 1.88097 1.87038 1.35514 1.19691 1.21612 1.01969 0.91180 0.83117 1.20299 0.93884 0.97163 0.95474 1.22377 1.02165 0.97571 0.95258 1.23223 0.91867 0.95513 0.96826 1.67684 1.04440 1.20505 1.29650 1.23139 1.00586 0.93108 0.90614 1.22348 0.96534 0.99937 0.99153 1.21144 0.79694 0.84407 0.85694 1.90732 1.39568 1.28300 1.87355 1.45778 1.53533 1.32413 1.04290 1.21325 0.98626 0.95583 0.83480 1.21829 0.95824 1.00815 0.91622 0.87388 1.22151 0.94582 1.01396 0.96380 1.22904 0.99312 0.99054 0.96773 1.21490 0.93557 0.91467 0.88004 0.92711 1.42625 1.56708 1.24239 1.14059 1.19628 1.20854 1.04240 0.92399 0.90489 1.25576 1.02004 0.97215 1.02327 1.69822 1.44628 1.12230 1.35669 0.85221 0.78330 0.76634 0.79651 1.20442 1.22449 1.20202 1.22482 0.98053 1.00392 0.94679 0.93208 0.88532 0.88821 0.90134 0.88894 0.82327 0.80512 0.80929 0.83378 0.74281 0.93636 0.92285 0.89069 0.91415 0.93068 0.94618 0.79827 0.94183 0.93062 0.91090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.33 9.42 71.98 0.68 -0.65 16 2 C 0.07 0.96 3.14 29.85 0.09 1.05 16 3 H 0.13 0.65 7.79 -2.39 -0.02 0.63 16 4 O -0.38 -7.06 9.50 -129.94 -1.23 -8.30 16 5 C 0.10 1.02 5.92 71.24 0.42 1.44 16 6 C -0.06 -0.86 5.55 -19.67 -0.11 -0.97 16 7 C -0.15 -2.00 9.82 22.36 0.22 -1.78 16 8 C 0.08 1.23 11.18 84.68 0.95 2.17 16 9 N -0.51 -9.82 10.36 -195.85 -2.03 -11.85 16 10 C 0.08 1.33 11.18 84.68 0.95 2.28 16 11 C -0.16 -2.41 9.82 22.36 0.22 -2.19 16 12 C 0.50 10.90 7.23 87.66 0.63 11.54 16 13 O -0.58 -19.78 16.50 16.01 0.26 -19.52 16 14 N -0.71 -11.53 5.19 -463.06 -2.40 -13.93 16 15 C 0.13 2.99 4.70 86.38 0.41 3.40 16 16 C -0.08 -1.69 2.98 -10.07 -0.03 -1.72 16 17 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 18 C -0.11 -2.27 6.13 31.32 0.19 -2.07 16 19 C -0.14 -4.60 6.51 31.67 0.21 -4.39 16 20 C 0.16 6.14 3.54 46.28 0.16 6.31 16 21 H 0.05 2.04 8.12 -2.39 -0.02 2.02 16 22 N -0.74 -37.31 5.25 -316.83 -1.66 -38.97 16 23 C -0.24 -13.29 9.98 84.04 0.84 -12.45 16 24 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 25 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 26 N -0.97 -60.50 13.06 21.65 0.28 -60.22 16 27 Si 0.97 46.27 29.55 68.60 2.03 48.30 16 28 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 29 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 30 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 31 C -0.12 -3.53 5.96 31.67 0.19 -3.35 16 32 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.10 0.34 7.56 -2.38 -0.02 0.32 16 34 H 0.09 0.33 7.87 -2.39 -0.02 0.31 16 35 H 0.08 0.56 8.04 -2.38 -0.02 0.54 16 36 H 0.09 0.43 7.83 -2.39 -0.02 0.42 16 37 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 38 H 0.18 1.64 8.06 -2.91 -0.02 1.61 16 39 H 0.17 1.96 8.06 -2.91 -0.02 1.94 16 40 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 41 H 0.42 3.47 7.73 -92.71 -0.72 2.76 16 42 H 0.05 1.27 8.14 -2.39 -0.02 1.26 16 43 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.07 1.36 7.58 -2.39 -0.02 1.34 16 46 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.37 20.43 7.72 -92.71 -0.72 19.72 16 49 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 50 H 0.05 1.74 7.73 -2.39 -0.02 1.72 16 51 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -82.83 420.78 1.22 -81.60 By element: Atomic # 1 Polarization: 28.92 SS G_CDS: -0.50 Total: 28.41 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: 6.48 Total: -5.52 kcal Atomic # 7 Polarization: -119.17 SS G_CDS: -5.81 Total: -124.98 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -0.97 Total: -27.82 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -82.83 1.22 -81.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479475133.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.653 kcal (2) G-P(sol) polarization free energy of solvation -82.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds