Wall clock time and date at job start Wed Apr 1 2020 04:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 109.47104 * 2 1 4 4 O 1.42900 * 109.47445 * 119.99744 * 2 1 3 5 5 C 1.35672 * 117.00367 * 270.00221 * 4 2 1 6 6 C 1.38914 * 119.68919 * 179.72439 * 5 4 2 7 7 C 1.38373 * 119.11713 * 179.75451 * 6 5 4 8 8 C 1.38835 * 118.47919 * 0.51543 * 7 6 5 9 9 C 1.38040 * 119.29516 * 359.72557 * 8 7 6 10 10 N 1.31973 * 120.83191 * 0.02618 * 9 8 7 11 11 C 1.50698 * 109.47326 * 240.00228 * 2 1 3 12 12 O 1.21277 * 119.99935 * 255.12315 * 11 2 1 13 13 N 1.34777 * 120.00152 * 75.12636 * 11 2 1 14 14 C 1.46929 * 120.63008 * 355.09637 * 13 11 2 15 15 C 1.53185 * 108.77348 * 233.60888 * 14 13 11 16 16 C 1.53045 * 109.31707 * 305.36597 * 15 14 13 17 17 C 1.53037 * 109.53598 * 61.36546 * 16 15 14 18 18 H 1.09000 * 109.49996 * 58.62100 * 17 16 15 19 19 C 1.52999 * 109.49587 * 178.68899 * 17 16 15 20 20 N 1.46505 * 109.46905 * 294.93528 * 19 17 16 21 21 C 1.46503 * 119.99720 * 269.99863 * 20 19 17 22 22 C 1.36934 * 120.00016 * 89.99905 * 20 19 17 23 23 H 1.07994 * 119.99880 * 340.49445 * 22 20 19 24 24 C 1.38807 * 119.99643 * 160.77012 * 22 20 19 25 25 N 1.31621 * 120.00234 * 345.94065 * 24 22 20 26 26 Si 1.86803 * 120.00013 * 165.94185 * 24 22 20 27 27 H 1.48498 * 109.47266 * 59.99694 * 26 24 22 28 28 H 1.48504 * 109.47382 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.46839 * 300.00078 * 26 24 22 30 30 C 1.46937 * 120.60534 * 175.11703 * 13 11 2 31 31 H 1.09005 * 109.46731 * 185.89853 * 1 2 3 32 32 H 1.08996 * 109.47333 * 305.89777 * 1 2 3 33 33 H 1.09003 * 109.47023 * 65.90433 * 1 2 3 34 34 H 1.08008 * 120.44173 * 0.02562 * 6 5 4 35 35 H 1.08004 * 120.76496 * 180.23934 * 7 6 5 36 36 H 1.08000 * 120.35465 * 179.70783 * 8 7 6 37 37 H 1.07996 * 119.58798 * 180.02562 * 9 8 7 38 38 H 1.09000 * 109.58169 * 113.82226 * 14 13 11 39 39 H 1.08999 * 109.58484 * 353.40127 * 14 13 11 40 40 H 1.09003 * 109.49897 * 185.41046 * 15 14 13 41 41 H 1.08997 * 109.52829 * 65.33385 * 15 14 13 42 42 H 1.09008 * 109.45159 * 301.34610 * 16 15 14 43 43 H 1.08996 * 109.46224 * 181.38907 * 16 15 14 44 44 H 1.09005 * 109.47424 * 174.93484 * 19 17 16 45 45 H 1.09000 * 109.47347 * 54.92906 * 19 17 16 46 46 H 1.08992 * 109.47354 * 267.76455 * 21 20 19 47 47 H 1.08998 * 109.47138 * 27.76722 * 21 20 19 48 48 H 1.09000 * 109.46913 * 147.75920 * 21 20 19 49 49 H 0.97009 * 120.00098 * 180.02562 * 25 24 22 50 50 H 1.08997 * 109.61421 * 6.62173 * 30 13 11 51 51 H 1.08995 * 109.56130 * 246.19097 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2117 0.0829 2.2741 6 6 2.6689 -0.5157 3.4413 7 6 2.8791 0.2679 4.5622 8 6 2.6130 1.6279 4.4786 9 6 2.1556 2.1547 3.2875 10 7 1.9695 1.3825 2.2336 11 6 2.0324 -0.7103 -1.2305 12 8 2.4888 -1.8303 -1.1402 13 7 1.9746 -0.1010 -2.4312 14 6 1.3279 1.2105 -2.5748 15 6 0.2732 1.1216 -3.6821 16 6 0.9273 0.5997 -4.9636 17 6 1.4884 -0.8026 -4.7172 18 1 0.6836 -1.4662 -4.4009 19 6 2.1132 -1.3366 -6.0077 20 7 1.0687 -1.5111 -7.0201 21 6 0.3572 -2.7874 -7.1260 22 6 0.7575 -0.4814 -7.8674 23 1 1.0309 0.5311 -7.6099 24 6 0.0855 -0.7383 -9.0545 25 7 -0.0096 -1.9721 -9.5031 26 14 -0.6837 0.6668 -10.0154 27 1 0.3713 1.6373 -10.4031 28 1 -1.3368 0.1319 -11.2372 29 1 -1.6966 1.3484 -9.1700 30 6 2.5568 -0.7363 -3.6213 31 1 -0.3633 -1.0223 0.1056 32 1 -0.3634 0.6025 0.8324 33 1 -0.3633 0.4196 -0.9381 34 1 2.8618 -1.5780 3.4722 35 1 3.2378 -0.1691 5.4825 36 1 2.7619 2.2670 5.3365 37 1 1.9475 3.2121 3.2170 38 1 2.0745 1.9589 -2.8405 39 1 0.8491 1.4866 -1.6353 40 1 -0.1468 2.1107 -3.8649 41 1 -0.5205 0.4404 -3.3755 42 1 1.7368 1.2685 -5.2563 43 1 0.1843 0.5588 -5.7600 44 1 2.5915 -2.2959 -5.8101 45 1 2.8570 -0.6278 -6.3717 46 1 0.8625 -3.4261 -7.8503 47 1 0.3463 -3.2791 -6.1532 48 1 -0.6667 -2.6065 -7.4529 49 1 -0.4789 -2.1516 -10.3329 50 1 2.8884 -1.7444 -3.3727 51 1 3.4039 -0.1469 -3.9721 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480087732.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:58 Heat of formation + Delta-G solvation = -5.226074 kcal Electronic energy + Delta-G solvation = -31073.171030 eV Core-core repulsion = 26974.097631 eV Total energy + Delta-G solvation = -4099.073400 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.14534 -40.18517 -38.35151 -37.29511 -35.56029 -33.33639 -32.84337 -32.05997 -31.64397 -30.49773 -29.95339 -26.22473 -25.77752 -25.66301 -24.55825 -23.82158 -22.89735 -22.32856 -21.19539 -19.70402 -19.08059 -18.75669 -17.33666 -16.89837 -16.60115 -16.23137 -16.07076 -15.78707 -15.07291 -15.01190 -14.86942 -14.32429 -14.17802 -13.98633 -13.82190 -13.54256 -13.41132 -13.32179 -13.15236 -12.83985 -12.60623 -12.45863 -12.31206 -12.28352 -11.95513 -11.65484 -11.39230 -11.22804 -10.93642 -10.80275 -10.73289 -10.54715 -10.32875 -10.30321 -10.25868 -10.05182 -9.98549 -9.76713 -9.68779 -9.57897 -8.85263 -8.55150 -8.45823 -6.72843 -5.69497 -3.11297 0.78654 0.89295 2.31157 2.54255 3.25581 3.38849 3.42256 3.44543 3.45297 3.90485 4.25784 4.47598 4.51573 4.62769 4.69799 4.73792 4.83053 4.85655 4.87962 5.10012 5.16391 5.29455 5.31587 5.35175 5.42450 5.44358 5.48223 5.57791 5.64912 5.72824 5.81513 5.84308 5.90242 5.94895 6.03064 6.07256 6.15255 6.21066 6.38569 6.58270 6.63748 6.70659 6.84625 6.92019 7.02986 7.03676 7.38344 7.47030 7.47686 7.74417 7.84771 8.12639 8.42123 9.27235 9.92208 10.40755 11.36384 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.026643 B = 0.002103 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.694416 B =13313.819379 C =13915.326511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.075 3.925 3 H 0.111 0.889 4 O -0.276 6.276 5 C 0.325 3.675 6 C -0.189 4.189 7 C -0.040 4.040 8 C -0.216 4.216 9 C 0.140 3.860 10 N -0.543 5.543 11 C 0.516 3.484 12 O -0.525 6.525 13 N -0.601 5.601 14 C 0.098 3.902 15 C -0.135 4.135 16 C -0.111 4.111 17 C -0.118 4.118 18 H 0.066 0.934 19 C 0.158 3.842 20 N -0.601 5.601 21 C 0.164 3.836 22 C -0.249 4.249 23 H 0.072 0.928 24 C -0.003 4.003 25 N -0.909 5.909 26 Si 0.901 3.099 27 H -0.284 1.284 28 H -0.292 1.292 29 H -0.285 1.285 30 C 0.117 3.883 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.137 0.863 37 H 0.160 0.840 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.054 0.946 43 H 0.094 0.906 44 H 0.037 0.963 45 H 0.047 0.953 46 H 0.023 0.977 47 H -0.006 1.006 48 H 0.049 0.951 49 H 0.252 0.748 50 H 0.088 0.912 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.411 9.258 27.284 29.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.015 3.985 3 H 0.129 0.871 4 O -0.182 6.182 5 C 0.146 3.854 6 C -0.210 4.210 7 C -0.066 4.066 8 C -0.236 4.236 9 C -0.015 4.015 10 N -0.267 5.267 11 C 0.302 3.698 12 O -0.401 6.401 13 N -0.336 5.336 14 C -0.024 4.024 15 C -0.173 4.173 16 C -0.149 4.149 17 C -0.140 4.140 18 H 0.084 0.916 19 C 0.030 3.970 20 N -0.323 5.323 21 C 0.020 3.980 22 C -0.378 4.378 23 H 0.090 0.910 24 C -0.201 4.201 25 N -0.555 5.555 26 Si 0.732 3.268 27 H -0.210 1.210 28 H -0.218 1.218 29 H -0.212 1.212 30 C -0.005 4.005 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.161 0.839 35 H 0.159 0.841 36 H 0.155 0.845 37 H 0.177 0.823 38 H 0.089 0.911 39 H 0.100 0.900 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.112 0.888 44 H 0.055 0.945 45 H 0.066 0.934 46 H 0.041 0.959 47 H 0.013 0.987 48 H 0.068 0.932 49 H 0.062 0.938 50 H 0.107 0.893 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.306 8.622 26.303 27.877 hybrid contribution -0.297 0.648 0.097 0.720 sum 3.009 9.271 26.400 28.142 Atomic orbital electron populations 1.22282 0.92309 1.04079 1.04006 1.22111 0.95966 0.97750 0.82657 0.87092 1.86398 1.79673 1.34442 1.17675 1.19933 0.90974 0.87395 0.87108 1.21118 1.06155 1.02317 0.91377 1.21432 0.94023 0.93441 0.97665 1.21986 1.05410 0.96243 0.99995 1.22432 0.92562 0.99210 0.87326 1.67276 1.21921 1.04774 1.32722 1.20135 0.79225 0.86379 0.84107 1.90716 1.45481 1.18281 1.85577 1.48051 1.57349 1.20533 1.07636 1.21984 0.96067 0.84175 1.00187 1.21969 0.97610 1.01708 0.96036 1.21608 1.01142 0.95355 0.96761 1.22225 0.97773 0.97740 0.96280 0.91552 1.20661 0.90766 0.97792 0.87801 1.43877 1.39560 1.12682 1.36175 1.20776 0.97234 0.86201 0.93816 1.19175 1.33092 0.87586 0.97946 0.91038 1.24962 1.02211 0.96199 0.96717 1.70094 1.45734 1.17944 1.21688 0.86383 0.79390 0.81716 0.79350 1.21046 1.21754 1.21188 1.21788 0.96029 0.98963 0.83688 0.90947 0.90778 0.89719 0.83905 0.84112 0.84548 0.82313 0.91117 0.89977 0.90995 0.91778 0.92715 0.88782 0.94484 0.93443 0.95912 0.98729 0.93194 0.93800 0.89326 0.91527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 9.08 37.16 0.34 -1.42 16 2 C 0.08 0.93 2.05 -27.88 -0.06 0.87 16 3 H 0.11 1.24 6.19 -51.92 -0.32 0.92 16 4 O -0.28 -3.77 9.34 -38.16 -0.36 -4.13 16 5 C 0.32 3.71 7.45 -17.12 -0.13 3.58 16 6 C -0.19 -1.72 10.04 -39.28 -0.39 -2.12 16 7 C -0.04 -0.26 10.17 -39.31 -0.40 -0.66 16 8 C -0.22 -1.29 10.11 -39.43 -0.40 -1.69 16 9 C 0.14 1.02 11.18 -17.56 -0.20 0.83 16 10 N -0.54 -5.55 8.65 -13.33 -0.12 -5.67 16 11 C 0.52 7.83 7.01 -10.99 -0.08 7.75 16 12 O -0.52 -10.02 15.98 -13.88 -0.22 -10.24 16 13 N -0.60 -8.31 2.97 -172.76 -0.51 -8.83 16 14 C 0.10 1.08 5.58 -3.71 -0.02 1.06 16 15 C -0.14 -1.68 6.08 -26.61 -0.16 -1.84 16 16 C -0.11 -1.78 4.44 -26.69 -0.12 -1.90 16 17 C -0.12 -2.01 2.54 -90.50 -0.23 -2.24 16 18 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 19 C 0.16 3.17 5.16 -4.04 -0.02 3.15 16 20 N -0.60 -14.75 2.81 -181.12 -0.51 -15.26 16 21 C 0.16 4.11 8.98 59.85 0.54 4.64 16 22 C -0.25 -6.55 8.12 -15.06 -0.12 -6.67 16 23 H 0.07 1.80 6.84 -52.49 -0.36 1.45 16 24 C 0.00 -0.09 5.07 -17.43 -0.09 -0.17 16 25 N -0.91 -26.47 10.57 55.49 0.59 -25.89 16 26 Si 0.90 21.54 29.58 -169.99 -5.03 16.51 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 28 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 29 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 30 C 0.12 1.78 5.73 -3.70 -0.02 1.76 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.80 6.05 -51.93 -0.31 0.48 16 34 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 35 H 0.14 0.51 8.06 -52.48 -0.42 0.08 16 36 H 0.14 0.44 8.06 -52.49 -0.42 0.02 16 37 H 0.16 0.70 8.06 -52.49 -0.42 0.27 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.74 4.41 -51.93 -0.23 0.51 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.05 0.85 8.14 -51.92 -0.42 0.42 16 43 H 0.09 1.82 6.00 -51.93 -0.31 1.51 16 44 H 0.04 0.72 8.07 -51.93 -0.42 0.31 16 45 H 0.05 0.94 8.04 -51.93 -0.42 0.52 16 46 H 0.02 0.61 7.60 -51.93 -0.39 0.22 16 47 H -0.01 -0.13 8.05 -51.93 -0.42 -0.55 16 48 H 0.05 1.34 6.90 -51.93 -0.36 0.98 16 49 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 50 H 0.09 1.47 7.00 -51.93 -0.36 1.11 16 51 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 400.83 15.07 6.04 6.04 Total: -1.00 -33.12 400.83 -9.79 -42.91 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -8.11 Total: -0.40 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -1.56 Total: 4.93 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: -0.55 Total: -55.63 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: -0.58 Total: -14.37 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.12 -9.79 -42.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480087732.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.686 kcal (2) G-P(sol) polarization free energy of solvation -33.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds