Wall clock time and date at job start Wed Apr 1 2020 04:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 109.47104 * 2 1 4 4 O 1.42900 * 109.47445 * 119.99744 * 2 1 3 5 5 C 1.35672 * 117.00367 * 270.00221 * 4 2 1 6 6 C 1.38914 * 119.68919 * 179.72439 * 5 4 2 7 7 C 1.38373 * 119.11713 * 179.75451 * 6 5 4 8 8 C 1.38835 * 118.47919 * 0.51543 * 7 6 5 9 9 C 1.38040 * 119.29516 * 359.72557 * 8 7 6 10 10 N 1.31973 * 120.83191 * 0.02618 * 9 8 7 11 11 C 1.50698 * 109.47326 * 240.00228 * 2 1 3 12 12 O 1.21277 * 119.99935 * 255.12315 * 11 2 1 13 13 N 1.34777 * 120.00152 * 75.12636 * 11 2 1 14 14 C 1.46929 * 120.63008 * 355.09637 * 13 11 2 15 15 C 1.53185 * 108.77348 * 233.60888 * 14 13 11 16 16 C 1.53045 * 109.31707 * 305.36597 * 15 14 13 17 17 C 1.53037 * 109.53598 * 61.36546 * 16 15 14 18 18 H 1.09000 * 109.49996 * 58.62100 * 17 16 15 19 19 C 1.52999 * 109.49587 * 178.68899 * 17 16 15 20 20 N 1.46505 * 109.46905 * 294.93528 * 19 17 16 21 21 C 1.46503 * 119.99720 * 269.99863 * 20 19 17 22 22 C 1.36934 * 120.00016 * 89.99905 * 20 19 17 23 23 H 1.07994 * 119.99880 * 340.49445 * 22 20 19 24 24 C 1.38807 * 119.99643 * 160.77012 * 22 20 19 25 25 N 1.31621 * 120.00234 * 345.94065 * 24 22 20 26 26 Si 1.86803 * 120.00013 * 165.94185 * 24 22 20 27 27 H 1.48498 * 109.47266 * 59.99694 * 26 24 22 28 28 H 1.48504 * 109.47382 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.46839 * 300.00078 * 26 24 22 30 30 C 1.46937 * 120.60534 * 175.11703 * 13 11 2 31 31 H 1.09005 * 109.46731 * 185.89853 * 1 2 3 32 32 H 1.08996 * 109.47333 * 305.89777 * 1 2 3 33 33 H 1.09003 * 109.47023 * 65.90433 * 1 2 3 34 34 H 1.08008 * 120.44173 * 0.02562 * 6 5 4 35 35 H 1.08004 * 120.76496 * 180.23934 * 7 6 5 36 36 H 1.08000 * 120.35465 * 179.70783 * 8 7 6 37 37 H 1.07996 * 119.58798 * 180.02562 * 9 8 7 38 38 H 1.09000 * 109.58169 * 113.82226 * 14 13 11 39 39 H 1.08999 * 109.58484 * 353.40127 * 14 13 11 40 40 H 1.09003 * 109.49897 * 185.41046 * 15 14 13 41 41 H 1.08997 * 109.52829 * 65.33385 * 15 14 13 42 42 H 1.09008 * 109.45159 * 301.34610 * 16 15 14 43 43 H 1.08996 * 109.46224 * 181.38907 * 16 15 14 44 44 H 1.09005 * 109.47424 * 174.93484 * 19 17 16 45 45 H 1.09000 * 109.47347 * 54.92906 * 19 17 16 46 46 H 1.08992 * 109.47354 * 267.76455 * 21 20 19 47 47 H 1.08998 * 109.47138 * 27.76722 * 21 20 19 48 48 H 1.09000 * 109.46913 * 147.75920 * 21 20 19 49 49 H 0.97009 * 120.00098 * 180.02562 * 25 24 22 50 50 H 1.08997 * 109.61421 * 6.62173 * 30 13 11 51 51 H 1.08995 * 109.56130 * 246.19097 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2117 0.0829 2.2741 6 6 2.6689 -0.5157 3.4413 7 6 2.8791 0.2679 4.5622 8 6 2.6130 1.6279 4.4786 9 6 2.1556 2.1547 3.2875 10 7 1.9695 1.3825 2.2336 11 6 2.0324 -0.7103 -1.2305 12 8 2.4888 -1.8303 -1.1402 13 7 1.9746 -0.1010 -2.4312 14 6 1.3279 1.2105 -2.5748 15 6 0.2732 1.1216 -3.6821 16 6 0.9273 0.5997 -4.9636 17 6 1.4884 -0.8026 -4.7172 18 1 0.6836 -1.4662 -4.4009 19 6 2.1132 -1.3366 -6.0077 20 7 1.0687 -1.5111 -7.0201 21 6 0.3572 -2.7874 -7.1260 22 6 0.7575 -0.4814 -7.8674 23 1 1.0309 0.5311 -7.6099 24 6 0.0855 -0.7383 -9.0545 25 7 -0.0096 -1.9721 -9.5031 26 14 -0.6837 0.6668 -10.0154 27 1 0.3713 1.6373 -10.4031 28 1 -1.3368 0.1319 -11.2372 29 1 -1.6966 1.3484 -9.1700 30 6 2.5568 -0.7363 -3.6213 31 1 -0.3633 -1.0223 0.1056 32 1 -0.3634 0.6025 0.8324 33 1 -0.3633 0.4196 -0.9381 34 1 2.8618 -1.5780 3.4722 35 1 3.2378 -0.1691 5.4825 36 1 2.7619 2.2670 5.3365 37 1 1.9475 3.2121 3.2170 38 1 2.0745 1.9589 -2.8405 39 1 0.8491 1.4866 -1.6353 40 1 -0.1468 2.1107 -3.8649 41 1 -0.5205 0.4404 -3.3755 42 1 1.7368 1.2685 -5.2563 43 1 0.1843 0.5588 -5.7600 44 1 2.5915 -2.2959 -5.8101 45 1 2.8570 -0.6278 -6.3717 46 1 0.8625 -3.4261 -7.8503 47 1 0.3463 -3.2791 -6.1532 48 1 -0.6667 -2.6065 -7.4529 49 1 -0.4789 -2.1516 -10.3329 50 1 2.8884 -1.7444 -3.3727 51 1 3.4039 -0.1469 -3.9721 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480087732.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:57 Heat of formation + Delta-G solvation = -25.261910 kcal Electronic energy + Delta-G solvation = -31074.039849 eV Core-core repulsion = 26974.097631 eV Total energy + Delta-G solvation = -4099.942219 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.98840 -41.14449 -39.35231 -38.49856 -37.22922 -34.72772 -33.46512 -33.18000 -32.99086 -31.80429 -30.90183 -28.04461 -27.41099 -26.93190 -25.41290 -24.47097 -24.01526 -23.45547 -22.68152 -21.13105 -20.16626 -19.59890 -18.65180 -18.25195 -17.72202 -17.07837 -16.95953 -16.81011 -16.62350 -16.07516 -15.80788 -15.54370 -15.41828 -15.17774 -15.00933 -14.91871 -14.66180 -14.37384 -14.15489 -14.01552 -13.86535 -13.72744 -13.30301 -13.29292 -13.01030 -12.86487 -12.78076 -12.67819 -12.58418 -12.31183 -12.22369 -12.12001 -11.97789 -11.90002 -11.66981 -11.42996 -11.16579 -10.91125 -10.80798 -10.57827 -10.54774 -9.71956 -9.49392 -8.75702 -7.77838 -5.21502 0.21239 0.33088 1.34214 1.43161 1.48982 1.51202 1.57231 2.32328 2.55078 2.83449 3.24326 3.30560 3.35881 3.66414 3.80209 3.85085 3.90995 3.99194 4.05705 4.08622 4.12833 4.23606 4.25762 4.35599 4.40371 4.44562 4.53656 4.57940 4.64927 4.71656 4.79134 4.81772 4.83031 4.86511 4.91457 4.99291 5.04506 5.08642 5.21302 5.25005 5.30629 5.36554 5.46169 5.55714 5.59491 5.63182 5.66228 5.74303 6.15259 6.30812 6.35979 6.85103 6.98481 7.18789 7.91625 8.37005 9.27508 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.026643 B = 0.002103 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.694416 B =13313.819379 C =13915.326511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.084 3.916 3 H 0.126 0.874 4 O -0.306 6.306 5 C 0.292 3.708 6 C -0.207 4.207 7 C -0.037 4.037 8 C -0.204 4.204 9 C 0.128 3.872 10 N -0.558 5.558 11 C 0.510 3.490 12 O -0.574 6.574 13 N -0.599 5.599 14 C 0.098 3.902 15 C -0.128 4.128 16 C -0.108 4.108 17 C -0.102 4.102 18 H 0.042 0.958 19 C 0.156 3.844 20 N -0.615 5.615 21 C 0.180 3.820 22 C -0.241 4.241 23 H 0.084 0.916 24 C -0.066 4.066 25 N -0.947 5.947 26 Si 0.966 3.034 27 H -0.274 1.274 28 H -0.302 1.302 29 H -0.277 1.277 30 C 0.125 3.875 31 H 0.056 0.944 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.141 0.859 35 H 0.172 0.828 36 H 0.171 0.829 37 H 0.189 0.811 38 H 0.093 0.907 39 H 0.108 0.892 40 H 0.098 0.902 41 H 0.055 0.945 42 H 0.064 0.936 43 H 0.059 0.941 44 H 0.037 0.963 45 H 0.053 0.947 46 H -0.003 1.003 47 H 0.016 0.984 48 H 0.024 0.976 49 H 0.244 0.756 50 H 0.069 0.931 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.680 12.917 30.159 33.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.024 3.976 3 H 0.143 0.857 4 O -0.213 6.213 5 C 0.114 3.886 6 C -0.227 4.227 7 C -0.062 4.062 8 C -0.224 4.224 9 C -0.027 4.027 10 N -0.282 5.282 11 C 0.298 3.702 12 O -0.453 6.453 13 N -0.332 5.332 14 C -0.023 4.023 15 C -0.166 4.166 16 C -0.145 4.145 17 C -0.124 4.124 18 H 0.061 0.939 19 C 0.029 3.971 20 N -0.338 5.338 21 C 0.035 3.965 22 C -0.371 4.371 23 H 0.102 0.898 24 C -0.260 4.260 25 N -0.595 5.595 26 Si 0.795 3.205 27 H -0.200 1.200 28 H -0.229 1.229 29 H -0.203 1.203 30 C 0.002 3.998 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.115 0.885 34 H 0.158 0.842 35 H 0.189 0.811 36 H 0.189 0.811 37 H 0.206 0.794 38 H 0.111 0.889 39 H 0.126 0.874 40 H 0.117 0.883 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.056 0.944 45 H 0.071 0.929 46 H 0.015 0.985 47 H 0.035 0.965 48 H 0.043 0.957 49 H 0.053 0.947 50 H 0.088 0.912 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.586 12.341 29.221 31.922 hybrid contribution -0.300 -0.457 -0.639 0.841 sum 3.285 11.884 28.581 31.127 Atomic orbital electron populations 1.22245 0.90972 1.03513 1.05146 1.22055 0.96734 0.97517 0.81287 0.85688 1.86353 1.80544 1.35846 1.18542 1.20173 0.93216 0.88187 0.87011 1.21338 1.06796 1.02779 0.91833 1.21852 0.92893 0.93722 0.97751 1.22421 1.03109 0.96297 1.00532 1.23058 0.92124 1.00319 0.87170 1.67227 1.22448 1.04363 1.34162 1.20772 0.78339 0.85896 0.85221 1.90685 1.47751 1.20527 1.86375 1.48123 1.56916 1.21324 1.06793 1.22219 0.96199 0.82922 1.00945 1.21909 0.97528 1.02691 0.94437 1.21507 1.00615 0.94689 0.97736 1.21916 0.97334 0.98062 0.95095 0.93909 1.20825 0.90029 0.98249 0.88015 1.44106 1.40627 1.12108 1.36951 1.20476 0.95523 0.86452 0.94034 1.19557 1.31599 0.88457 0.97526 0.89830 1.25768 1.03593 0.98402 0.98198 1.70277 1.47221 1.19962 1.22029 0.85343 0.78657 0.78992 0.77520 1.19987 1.22876 1.20260 1.21568 0.95788 0.98758 0.83702 0.92484 0.89431 0.88517 0.84155 0.81079 0.81121 0.79428 0.88922 0.87428 0.88347 0.92616 0.91713 0.92241 0.94443 0.92878 0.98507 0.96532 0.95688 0.94653 0.91230 0.89661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.16 9.08 71.98 0.65 -2.51 16 2 C 0.08 2.00 2.05 29.85 0.06 2.06 16 3 H 0.13 2.56 6.19 -2.38 -0.01 2.55 16 4 O -0.31 -8.48 9.34 -71.31 -0.67 -9.15 16 5 C 0.29 6.52 7.45 84.79 0.63 7.15 16 6 C -0.21 -3.64 10.04 22.46 0.23 -3.41 16 7 C -0.04 -0.38 10.17 22.45 0.23 -0.15 16 8 C -0.20 -1.68 10.11 22.37 0.23 -1.45 16 9 C 0.13 1.48 11.18 84.62 0.95 2.42 16 10 N -0.56 -10.37 8.65 -308.95 -2.67 -13.05 16 11 C 0.51 15.42 7.01 87.66 0.61 16.04 16 12 O -0.57 -22.70 15.98 15.57 0.25 -22.45 16 13 N -0.60 -15.77 2.97 -818.89 -2.43 -18.21 16 14 C 0.10 1.84 5.58 86.36 0.48 2.33 16 15 C -0.13 -2.83 6.08 30.67 0.19 -2.64 16 16 C -0.11 -3.29 4.44 30.62 0.14 -3.15 16 17 C -0.10 -3.46 2.54 -10.72 -0.03 -3.49 16 18 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 19 C 0.16 6.25 5.16 86.38 0.45 6.70 16 20 N -0.61 -30.69 2.81 -726.94 -2.04 -32.74 16 21 C 0.18 9.34 8.98 127.77 1.15 10.48 16 22 C -0.24 -12.76 8.12 84.03 0.68 -12.08 16 23 H 0.08 4.14 6.84 -2.91 -0.02 4.12 16 24 C -0.07 -3.68 5.07 84.86 0.43 -3.25 16 25 N -0.95 -56.89 10.57 21.65 0.23 -56.66 16 26 Si 0.97 44.66 29.58 68.60 2.03 46.69 16 27 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 28 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 29 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 30 C 0.12 3.70 5.73 86.36 0.49 4.20 16 31 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 32 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.10 1.61 6.05 -2.39 -0.01 1.59 16 34 H 0.14 2.36 8.06 -2.91 -0.02 2.33 16 35 H 0.17 0.63 8.06 -2.91 -0.02 0.61 16 36 H 0.17 0.22 8.06 -2.91 -0.02 0.20 16 37 H 0.19 0.89 8.06 -2.91 -0.02 0.87 16 38 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.11 1.53 4.41 -2.39 -0.01 1.52 16 40 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 43 H 0.06 2.25 6.00 -2.39 -0.01 2.24 16 44 H 0.04 1.49 8.07 -2.38 -0.02 1.47 16 45 H 0.05 2.07 8.04 -2.39 -0.02 2.05 16 46 H 0.00 -0.19 7.60 -2.39 -0.02 -0.21 16 47 H 0.02 0.75 8.05 -2.39 -0.02 0.73 16 48 H 0.02 1.38 6.90 -2.39 -0.02 1.36 16 49 H 0.24 14.40 8.31 -92.70 -0.77 13.63 16 50 H 0.07 2.36 7.00 -2.39 -0.02 2.34 16 51 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -75.82 400.83 3.18 -72.65 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: 0.92 Total: 13.66 kcal Atomic # 6 Polarization: 11.69 SS G_CDS: 7.56 Total: 19.25 kcal Atomic # 7 Polarization: -113.73 SS G_CDS: -6.92 Total: -120.65 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -0.42 Total: -31.60 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -75.82 3.18 -72.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480087732.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.384 kcal (2) G-P(sol) polarization free energy of solvation -75.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds