Wall clock time and date at job start Wed Apr 1 2020 04:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47075 * 2 1 4 4 O 1.42903 * 109.47122 * 240.00135 * 2 1 3 5 5 C 1.35678 * 116.99716 * 90.00173 * 4 2 1 6 6 C 1.38917 * 119.68257 * 180.02562 * 5 4 2 7 7 C 1.38384 * 119.11451 * 179.97438 * 6 5 4 8 8 C 1.38836 * 118.47977 * 359.97438 * 7 6 5 9 9 C 1.38046 * 119.29059 * 0.02562 * 8 7 6 10 10 N 1.31963 * 120.83607 * 359.73311 * 9 8 7 11 11 C 1.50700 * 109.47298 * 120.00380 * 2 1 3 12 12 O 1.21281 * 120.00215 * 108.41385 * 11 2 1 13 13 N 1.34778 * 119.99995 * 288.41775 * 11 2 1 14 14 C 1.46933 * 120.62968 * 184.55951 * 13 11 2 15 15 C 1.53621 * 108.53946 * 126.36657 * 14 13 11 16 16 C 1.53037 * 109.24612 * 54.85647 * 15 14 13 17 17 C 1.53046 * 109.53600 * 298.50818 * 16 15 14 18 18 H 1.09000 * 109.52471 * 301.39523 * 17 16 15 19 19 C 1.53001 * 109.49543 * 181.31432 * 17 16 15 20 20 N 1.46503 * 109.47016 * 65.16365 * 19 17 16 21 21 C 1.46499 * 119.99939 * 89.99833 * 20 19 17 22 22 C 1.36936 * 120.00046 * 269.99525 * 20 19 17 23 23 H 1.07993 * 120.00347 * 142.36298 * 22 20 19 24 24 C 1.38813 * 119.99867 * 322.37044 * 22 20 19 25 25 N 1.31616 * 120.00045 * 158.19688 * 24 22 20 26 26 Si 1.86798 * 120.00003 * 338.18669 * 24 22 20 27 27 H 1.48505 * 109.47005 * 95.39076 * 26 24 22 28 28 H 1.48499 * 109.47684 * 215.38996 * 26 24 22 29 29 H 1.48501 * 109.47139 * 335.39290 * 26 24 22 30 30 C 1.46928 * 120.62805 * 4.83327 * 13 11 2 31 31 H 1.09003 * 109.47137 * 64.46605 * 1 2 3 32 32 H 1.09006 * 109.47225 * 184.46719 * 1 2 3 33 33 H 1.08996 * 109.47339 * 304.46257 * 1 2 3 34 34 H 1.07996 * 120.44743 * 359.97438 * 6 5 4 35 35 H 1.07991 * 120.76311 * 180.02562 * 7 6 5 36 36 H 1.08002 * 120.35105 * 180.02562 * 8 7 6 37 37 H 1.07996 * 119.58160 * 180.02562 * 9 8 7 38 38 H 1.08997 * 109.58215 * 246.19833 * 14 13 11 39 39 H 1.08994 * 109.58457 * 6.62226 * 14 13 11 40 40 H 1.09004 * 109.63675 * 294.86313 * 15 14 13 41 41 H 1.09004 * 109.45319 * 174.73994 * 15 14 13 42 42 H 1.09000 * 109.46224 * 178.49021 * 16 15 14 43 43 H 1.09000 * 109.45269 * 58.51647 * 16 15 14 44 44 H 1.08999 * 109.47010 * 185.15675 * 19 17 16 45 45 H 1.08995 * 109.47621 * 305.15975 * 19 17 16 46 46 H 1.08997 * 109.47297 * 85.12753 * 21 20 19 47 47 H 1.09000 * 109.47248 * 205.12193 * 21 20 19 48 48 H 1.09001 * 109.47387 * 325.12004 * 21 20 19 49 49 H 0.97003 * 119.99713 * 179.97438 * 25 24 22 50 50 H 1.08999 * 109.58745 * 353.37380 * 30 13 11 51 51 H 1.08995 * 109.58197 * 113.80242 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.2116 0.0830 -2.2741 6 6 2.6737 -0.5148 -3.4399 7 6 2.8785 0.2680 -4.5625 8 6 2.6120 1.6279 -4.4789 9 6 2.1547 2.1546 -3.2876 10 7 1.9645 1.3817 -2.2351 11 6 2.0323 -0.7105 1.2304 12 8 2.5473 -1.8041 1.1314 13 7 1.9093 -0.1306 2.4408 14 6 2.4824 -0.7643 3.6362 15 6 3.3868 0.2560 4.3439 16 6 2.5849 1.5276 4.6304 17 6 2.1085 2.1403 3.3113 18 1 2.9696 2.3647 2.6818 19 6 1.3348 3.4290 3.5969 20 7 2.2404 4.4237 4.1772 21 6 2.9717 5.3458 3.3048 22 6 2.4032 4.4916 5.5352 23 1 3.3762 4.7047 5.9524 24 6 1.3175 4.2864 6.3755 25 7 1.5123 3.9257 7.6262 26 14 -0.4199 4.5225 5.7313 27 1 -0.9695 3.2126 5.2983 28 1 -1.2744 5.0866 6.8068 29 1 -0.3971 5.4558 4.5764 30 6 1.1943 1.1441 2.5910 31 1 -0.3633 0.4430 -0.9273 32 1 -0.3634 -1.0246 0.0800 33 1 -0.3634 0.5815 0.8473 34 1 2.8704 -1.5763 -3.4697 35 1 3.2366 -0.1691 -5.4828 36 1 2.7608 2.2669 -5.3368 37 1 1.9455 3.2118 -3.2175 38 1 1.6801 -1.0725 4.3066 39 1 3.0702 -1.6339 3.3424 40 1 4.2362 0.4978 3.7049 41 1 3.7461 -0.1667 5.2822 42 1 3.2158 2.2440 5.1565 43 1 1.7219 1.2809 5.2487 44 1 0.9179 3.8161 2.6671 45 1 0.5270 3.2201 4.2981 46 1 2.3430 6.2068 3.0777 47 1 3.8783 5.6808 3.8087 48 1 3.2379 4.8360 2.3789 49 1 0.7536 3.7827 8.2134 50 1 0.9321 1.5341 1.6075 51 1 0.2892 0.9884 3.1779 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480087740.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:10 Heat of formation + Delta-G solvation = -2.627532 kcal Electronic energy + Delta-G solvation = -31961.078035 eV Core-core repulsion = 27862.117316 eV Total energy + Delta-G solvation = -4098.960718 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.06868 -40.12561 -38.28921 -37.38762 -35.60638 -33.26489 -32.74575 -32.12035 -31.51328 -30.93256 -30.08240 -26.54833 -25.99004 -25.56139 -24.48409 -23.75965 -23.00656 -22.05723 -21.05298 -19.98978 -19.03905 -18.75566 -17.34415 -16.84420 -16.58537 -16.18349 -15.98792 -15.84446 -15.31981 -14.86598 -14.75917 -14.35739 -14.26846 -14.02760 -13.71455 -13.58150 -13.40668 -13.29890 -13.01685 -12.77709 -12.71777 -12.43518 -12.32173 -12.28632 -12.14261 -11.95794 -11.71985 -11.36268 -11.24896 -10.99984 -10.85308 -10.49496 -10.38177 -10.25471 -10.23147 -9.99115 -9.88675 -9.79484 -9.57774 -9.47762 -8.76760 -8.55135 -8.46819 -6.84280 -6.03450 -3.43653 0.87688 0.98303 2.36369 2.59522 3.24022 3.31908 3.43052 3.47595 3.51353 4.00499 4.32363 4.47772 4.56132 4.71359 4.78218 4.81130 4.88020 4.93547 4.93680 5.08491 5.24577 5.33280 5.39337 5.40240 5.43695 5.48485 5.51546 5.61436 5.66035 5.68955 5.79437 5.89383 5.90465 5.95043 6.06719 6.13148 6.18374 6.25201 6.27186 6.42936 6.44894 6.51804 6.68735 6.69608 6.78657 6.99427 7.02569 7.33686 7.42911 7.57938 8.01599 8.15053 8.33175 8.94677 9.67317 10.08732 11.11947 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013201 B = 0.003154 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.491239 B = 8876.772842 C = 9933.557207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.073 3.927 3 H 0.115 0.885 4 O -0.277 6.277 5 C 0.324 3.676 6 C -0.190 4.190 7 C -0.041 4.041 8 C -0.216 4.216 9 C 0.142 3.858 10 N -0.540 5.540 11 C 0.518 3.482 12 O -0.532 6.532 13 N -0.599 5.599 14 C 0.114 3.886 15 C -0.133 4.133 16 C -0.104 4.104 17 C -0.114 4.114 18 H 0.066 0.934 19 C 0.144 3.856 20 N -0.610 5.610 21 C 0.125 3.875 22 C -0.265 4.265 23 H 0.078 0.922 24 C 0.039 3.961 25 N -0.898 5.898 26 Si 0.874 3.126 27 H -0.286 1.286 28 H -0.302 1.302 29 H -0.270 1.270 30 C 0.099 3.901 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.137 0.863 37 H 0.161 0.839 38 H 0.068 0.932 39 H 0.086 0.914 40 H 0.059 0.941 41 H 0.072 0.928 42 H 0.099 0.901 43 H 0.057 0.943 44 H 0.039 0.961 45 H 0.055 0.945 46 H 0.006 0.994 47 H 0.045 0.955 48 H 0.025 0.975 49 H 0.263 0.737 50 H 0.082 0.918 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.343 -6.588 -21.431 22.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.013 3.987 3 H 0.133 0.867 4 O -0.183 6.183 5 C 0.145 3.855 6 C -0.211 4.211 7 C -0.066 4.066 8 C -0.236 4.236 9 C -0.013 4.013 10 N -0.264 5.264 11 C 0.304 3.696 12 O -0.409 6.409 13 N -0.332 5.332 14 C -0.008 4.008 15 C -0.171 4.171 16 C -0.141 4.141 17 C -0.136 4.136 18 H 0.085 0.915 19 C 0.017 3.983 20 N -0.334 5.334 21 C -0.020 4.020 22 C -0.393 4.393 23 H 0.096 0.904 24 C -0.162 4.162 25 N -0.539 5.539 26 Si 0.705 3.295 27 H -0.214 1.214 28 H -0.231 1.231 29 H -0.195 1.195 30 C -0.024 4.024 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.103 0.897 34 H 0.160 0.840 35 H 0.158 0.842 36 H 0.155 0.845 37 H 0.178 0.822 38 H 0.086 0.914 39 H 0.104 0.896 40 H 0.078 0.922 41 H 0.090 0.910 42 H 0.118 0.882 43 H 0.076 0.924 44 H 0.057 0.943 45 H 0.073 0.927 46 H 0.024 0.976 47 H 0.063 0.937 48 H 0.044 0.956 49 H 0.073 0.927 50 H 0.100 0.900 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.389 -7.118 -20.469 21.674 hybrid contribution -0.882 0.043 -0.902 1.262 sum -1.271 -7.075 -21.370 22.547 Atomic orbital electron populations 1.22283 0.92370 1.03741 1.04184 1.22096 0.95902 0.98059 0.82599 0.86733 1.86371 1.79753 1.34495 1.17665 1.19931 0.91016 0.87457 0.87064 1.21090 1.06354 1.02233 0.91410 1.21418 0.94142 0.93467 0.97615 1.21992 1.05420 0.96208 1.00001 1.22466 0.92329 0.99284 0.87259 1.67297 1.21752 1.04700 1.32671 1.20119 0.79385 0.85947 0.84111 1.90690 1.44271 1.19997 1.85910 1.48027 1.55254 1.23310 1.06658 1.21784 0.97348 0.96368 0.85316 1.22047 0.98285 0.96807 0.99976 1.21488 1.00639 0.95683 0.96310 1.22127 0.98612 0.95674 0.97195 0.91542 1.21132 0.92803 0.87985 0.96367 1.44001 1.51829 1.34001 1.03543 1.21066 0.95572 0.92207 0.93159 1.18716 0.94762 1.46468 0.79379 0.90416 1.25421 0.97591 0.98340 0.94833 1.69858 1.30948 1.46739 1.06339 0.86994 0.86379 0.77992 0.78166 1.21372 1.23057 1.19536 1.22166 0.95670 0.83106 1.01455 0.90766 0.91272 0.89682 0.84014 0.84170 0.84540 0.82220 0.91395 0.89561 0.92222 0.90981 0.88213 0.92427 0.94258 0.92728 0.97599 0.93663 0.95583 0.92740 0.89967 0.90928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.91 9.16 37.15 0.34 -1.57 16 2 C 0.07 1.01 2.05 -27.89 -0.06 0.95 16 3 H 0.12 1.56 6.14 -51.93 -0.32 1.24 16 4 O -0.28 -4.04 9.32 -38.38 -0.36 -4.40 16 5 C 0.32 4.09 7.45 -17.12 -0.13 3.96 16 6 C -0.19 -1.91 10.04 -39.28 -0.39 -2.30 16 7 C -0.04 -0.31 10.17 -39.31 -0.40 -0.71 16 8 C -0.22 -1.56 10.11 -39.43 -0.40 -1.96 16 9 C 0.14 1.27 11.18 -17.57 -0.20 1.07 16 10 N -0.54 -6.42 8.65 -13.33 -0.12 -6.53 16 11 C 0.52 8.28 7.05 -10.99 -0.08 8.20 16 12 O -0.53 -10.18 15.97 -14.08 -0.22 -10.40 16 13 N -0.60 -9.02 2.97 -172.50 -0.51 -9.53 16 14 C 0.11 1.69 6.45 -3.48 -0.02 1.67 16 15 C -0.13 -2.08 6.10 -26.39 -0.16 -2.24 16 16 C -0.10 -1.93 4.77 -26.69 -0.13 -2.05 16 17 C -0.11 -1.96 2.55 -90.50 -0.23 -2.19 16 18 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 19 C 0.14 2.83 4.03 -4.04 -0.02 2.82 16 20 N -0.61 -13.58 2.36 -181.12 -0.43 -14.00 16 21 C 0.13 2.39 10.70 59.85 0.64 3.03 16 22 C -0.26 -6.90 7.81 -15.06 -0.12 -7.01 16 23 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 24 C 0.04 1.05 5.31 -17.43 -0.09 0.96 16 25 N -0.90 -25.91 13.97 55.49 0.78 -25.13 16 26 Si 0.87 21.18 25.01 -169.99 -4.25 16.93 16 27 H -0.29 -6.60 6.68 56.52 0.38 -6.22 16 28 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 29 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 30 C 0.10 1.43 4.60 -3.71 -0.02 1.41 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 0.88 5.82 -51.93 -0.30 0.58 16 34 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 35 H 0.14 0.63 8.06 -52.49 -0.42 0.20 16 36 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 37 H 0.16 1.01 8.06 -52.49 -0.42 0.59 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.09 1.31 7.03 -51.93 -0.37 0.95 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.10 2.21 6.26 -51.93 -0.33 1.88 16 43 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.04 0.69 8.07 -51.93 -0.42 0.27 16 45 H 0.05 1.19 3.23 -51.93 -0.17 1.02 16 46 H 0.01 0.11 8.14 -51.93 -0.42 -0.31 16 47 H 0.04 0.85 8.00 -51.93 -0.42 0.44 16 48 H 0.03 0.43 8.11 -51.93 -0.42 0.01 16 49 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 50 H 0.08 1.03 4.55 -51.93 -0.24 0.80 16 51 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 397.75 15.07 5.99 5.99 Total: -1.00 -31.99 397.75 -8.62 -40.61 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -8.05 Total: 2.43 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: -1.46 Total: 4.04 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: -0.28 Total: -55.20 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -0.58 Total: -14.80 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.25 Total: 16.93 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.99 -8.62 -40.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480087740.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.983 kcal (2) G-P(sol) polarization free energy of solvation -31.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds