Wall clock time and date at job start Wed Apr 1 2020 04:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47075 * 2 1 4 4 O 1.42903 * 109.47122 * 240.00135 * 2 1 3 5 5 C 1.35678 * 116.99716 * 90.00173 * 4 2 1 6 6 C 1.38917 * 119.68257 * 180.02562 * 5 4 2 7 7 C 1.38384 * 119.11451 * 179.97438 * 6 5 4 8 8 C 1.38836 * 118.47977 * 359.97438 * 7 6 5 9 9 C 1.38046 * 119.29059 * 0.02562 * 8 7 6 10 10 N 1.31963 * 120.83607 * 359.73311 * 9 8 7 11 11 C 1.50700 * 109.47298 * 120.00380 * 2 1 3 12 12 O 1.21281 * 120.00215 * 108.41385 * 11 2 1 13 13 N 1.34778 * 119.99995 * 288.41775 * 11 2 1 14 14 C 1.46933 * 120.62968 * 184.55951 * 13 11 2 15 15 C 1.53621 * 108.53946 * 126.36657 * 14 13 11 16 16 C 1.53037 * 109.24612 * 54.85647 * 15 14 13 17 17 C 1.53046 * 109.53600 * 298.50818 * 16 15 14 18 18 H 1.09000 * 109.52471 * 301.39523 * 17 16 15 19 19 C 1.53001 * 109.49543 * 181.31432 * 17 16 15 20 20 N 1.46503 * 109.47016 * 65.16365 * 19 17 16 21 21 C 1.46499 * 119.99939 * 89.99833 * 20 19 17 22 22 C 1.36936 * 120.00046 * 269.99525 * 20 19 17 23 23 H 1.07993 * 120.00347 * 142.36298 * 22 20 19 24 24 C 1.38813 * 119.99867 * 322.37044 * 22 20 19 25 25 N 1.31616 * 120.00045 * 158.19688 * 24 22 20 26 26 Si 1.86798 * 120.00003 * 338.18669 * 24 22 20 27 27 H 1.48505 * 109.47005 * 95.39076 * 26 24 22 28 28 H 1.48499 * 109.47684 * 215.38996 * 26 24 22 29 29 H 1.48501 * 109.47139 * 335.39290 * 26 24 22 30 30 C 1.46928 * 120.62805 * 4.83327 * 13 11 2 31 31 H 1.09003 * 109.47137 * 64.46605 * 1 2 3 32 32 H 1.09006 * 109.47225 * 184.46719 * 1 2 3 33 33 H 1.08996 * 109.47339 * 304.46257 * 1 2 3 34 34 H 1.07996 * 120.44743 * 359.97438 * 6 5 4 35 35 H 1.07991 * 120.76311 * 180.02562 * 7 6 5 36 36 H 1.08002 * 120.35105 * 180.02562 * 8 7 6 37 37 H 1.07996 * 119.58160 * 180.02562 * 9 8 7 38 38 H 1.08997 * 109.58215 * 246.19833 * 14 13 11 39 39 H 1.08994 * 109.58457 * 6.62226 * 14 13 11 40 40 H 1.09004 * 109.63675 * 294.86313 * 15 14 13 41 41 H 1.09004 * 109.45319 * 174.73994 * 15 14 13 42 42 H 1.09000 * 109.46224 * 178.49021 * 16 15 14 43 43 H 1.09000 * 109.45269 * 58.51647 * 16 15 14 44 44 H 1.08999 * 109.47010 * 185.15675 * 19 17 16 45 45 H 1.08995 * 109.47621 * 305.15975 * 19 17 16 46 46 H 1.08997 * 109.47297 * 85.12753 * 21 20 19 47 47 H 1.09000 * 109.47248 * 205.12193 * 21 20 19 48 48 H 1.09001 * 109.47387 * 325.12004 * 21 20 19 49 49 H 0.97003 * 119.99713 * 179.97438 * 25 24 22 50 50 H 1.08999 * 109.58745 * 353.37380 * 30 13 11 51 51 H 1.08995 * 109.58197 * 113.80242 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.2116 0.0830 -2.2741 6 6 2.6737 -0.5148 -3.4399 7 6 2.8785 0.2680 -4.5625 8 6 2.6120 1.6279 -4.4789 9 6 2.1547 2.1546 -3.2876 10 7 1.9645 1.3817 -2.2351 11 6 2.0323 -0.7105 1.2304 12 8 2.5473 -1.8041 1.1314 13 7 1.9093 -0.1306 2.4408 14 6 2.4824 -0.7643 3.6362 15 6 3.3868 0.2560 4.3439 16 6 2.5849 1.5276 4.6304 17 6 2.1085 2.1403 3.3113 18 1 2.9696 2.3647 2.6818 19 6 1.3348 3.4290 3.5969 20 7 2.2404 4.4237 4.1772 21 6 2.9717 5.3458 3.3048 22 6 2.4032 4.4916 5.5352 23 1 3.3762 4.7047 5.9524 24 6 1.3175 4.2864 6.3755 25 7 1.5123 3.9257 7.6262 26 14 -0.4199 4.5225 5.7313 27 1 -0.9695 3.2126 5.2983 28 1 -1.2744 5.0866 6.8068 29 1 -0.3971 5.4558 4.5764 30 6 1.1943 1.1441 2.5910 31 1 -0.3633 0.4430 -0.9273 32 1 -0.3634 -1.0246 0.0800 33 1 -0.3634 0.5815 0.8473 34 1 2.8704 -1.5763 -3.4697 35 1 3.2366 -0.1691 -5.4828 36 1 2.7608 2.2669 -5.3368 37 1 1.9455 3.2118 -3.2175 38 1 1.6801 -1.0725 4.3066 39 1 3.0702 -1.6339 3.3424 40 1 4.2362 0.4978 3.7049 41 1 3.7461 -0.1667 5.2822 42 1 3.2158 2.2440 5.1565 43 1 1.7219 1.2809 5.2487 44 1 0.9179 3.8161 2.6671 45 1 0.5270 3.2201 4.2981 46 1 2.3430 6.2068 3.0777 47 1 3.8783 5.6808 3.8087 48 1 3.2379 4.8360 2.3789 49 1 0.7536 3.7827 8.2134 50 1 0.9321 1.5341 1.6075 51 1 0.2892 0.9884 3.1779 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480087740.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:09 Heat of formation + Delta-G solvation = -22.366557 kcal Electronic energy + Delta-G solvation = -31961.933983 eV Core-core repulsion = 27862.117316 eV Total energy + Delta-G solvation = -4099.816667 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.00792 -41.16571 -39.41265 -38.61125 -37.19682 -34.45571 -33.86620 -33.42365 -32.99241 -32.13916 -30.89090 -28.17166 -27.46802 -26.96921 -25.44302 -24.50032 -23.99344 -23.46795 -22.57420 -21.40064 -20.27033 -19.63704 -18.77540 -18.15394 -17.79542 -17.29092 -17.00759 -16.80966 -16.71228 -16.04778 -15.83703 -15.57399 -15.45420 -15.42981 -15.26010 -14.69673 -14.49364 -14.39645 -14.37209 -14.00472 -13.98247 -13.83025 -13.70388 -13.43077 -13.30280 -13.09930 -12.80949 -12.72514 -12.57463 -12.41063 -12.22823 -12.21870 -11.98281 -11.77564 -11.62096 -11.44551 -11.19709 -10.90776 -10.79653 -10.56432 -10.54510 -9.77559 -9.49679 -8.68620 -8.12091 -5.48749 0.20930 0.33561 1.28453 1.32555 1.44056 1.46536 1.55897 2.28319 2.47316 2.83295 3.09804 3.22240 3.29540 3.46700 3.75419 3.81900 3.92766 3.97636 4.04673 4.05763 4.11271 4.12951 4.23359 4.32193 4.34885 4.36530 4.47682 4.60242 4.60715 4.65028 4.69812 4.76349 4.79422 4.81530 4.84690 4.96254 5.02408 5.03301 5.07536 5.09501 5.16305 5.22483 5.29900 5.42855 5.52773 5.54936 5.71159 6.01117 6.12789 6.23094 6.25864 6.85106 6.94279 7.05895 7.70296 8.12127 9.07409 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013201 B = 0.003154 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.491239 B = 8876.772842 C = 9933.557207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.079 3.921 3 H 0.117 0.883 4 O -0.302 6.302 5 C 0.291 3.709 6 C -0.204 4.204 7 C -0.036 4.036 8 C -0.203 4.203 9 C 0.126 3.874 10 N -0.560 5.560 11 C 0.516 3.484 12 O -0.569 6.569 13 N -0.596 5.596 14 C 0.116 3.884 15 C -0.122 4.122 16 C -0.096 4.096 17 C -0.105 4.105 18 H 0.067 0.933 19 C 0.139 3.861 20 N -0.623 5.623 21 C 0.124 3.876 22 C -0.245 4.245 23 H 0.037 0.963 24 C -0.012 4.012 25 N -0.946 5.946 26 Si 0.932 3.068 27 H -0.266 1.266 28 H -0.316 1.316 29 H -0.260 1.260 30 C 0.105 3.895 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.098 0.902 34 H 0.144 0.856 35 H 0.174 0.826 36 H 0.171 0.829 37 H 0.184 0.816 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.057 0.943 41 H 0.078 0.922 42 H 0.057 0.943 43 H 0.039 0.961 44 H 0.071 0.929 45 H 0.037 0.963 46 H 0.016 0.984 47 H 0.037 0.963 48 H 0.055 0.945 49 H 0.260 0.740 50 H 0.108 0.892 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.472 -6.108 -25.306 26.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.019 3.981 3 H 0.134 0.866 4 O -0.209 6.209 5 C 0.113 3.887 6 C -0.224 4.224 7 C -0.062 4.062 8 C -0.223 4.223 9 C -0.029 4.029 10 N -0.284 5.284 11 C 0.304 3.696 12 O -0.448 6.448 13 N -0.329 5.329 14 C -0.006 4.006 15 C -0.160 4.160 16 C -0.134 4.134 17 C -0.126 4.126 18 H 0.085 0.915 19 C 0.013 3.987 20 N -0.348 5.348 21 C -0.020 4.020 22 C -0.375 4.375 23 H 0.055 0.945 24 C -0.208 4.208 25 N -0.590 5.590 26 Si 0.761 3.239 27 H -0.193 1.193 28 H -0.246 1.246 29 H -0.185 1.185 30 C -0.017 4.017 31 H 0.100 0.900 32 H 0.083 0.917 33 H 0.116 0.884 34 H 0.162 0.838 35 H 0.191 0.809 36 H 0.188 0.812 37 H 0.201 0.799 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.075 0.925 41 H 0.097 0.903 42 H 0.076 0.924 43 H 0.058 0.942 44 H 0.089 0.911 45 H 0.055 0.945 46 H 0.034 0.966 47 H 0.055 0.945 48 H 0.074 0.926 49 H 0.069 0.931 50 H 0.126 0.874 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.520 -6.619 -24.398 25.326 hybrid contribution -0.366 -0.049 0.195 0.417 sum -1.886 -6.668 -24.204 25.176 Atomic orbital electron populations 1.22251 0.90623 1.03818 1.05105 1.22046 0.97075 0.97363 0.81616 0.86554 1.86327 1.80610 1.35626 1.18350 1.20197 0.93248 0.88118 0.87125 1.21343 1.06593 1.02877 0.91635 1.21862 0.92883 0.93576 0.97853 1.22413 1.03089 0.96450 1.00350 1.23017 0.92331 1.00215 0.87326 1.67232 1.22458 1.04587 1.34153 1.20609 0.78554 0.85563 0.84835 1.90667 1.45966 1.21742 1.86445 1.48053 1.54964 1.23335 1.06552 1.21747 0.97517 0.95853 0.85474 1.21924 0.97915 0.95742 1.00459 1.21302 0.99416 0.96034 0.96625 1.21945 0.98867 0.95365 0.96449 0.91475 1.21242 0.92041 0.88443 0.96947 1.44142 1.52535 1.35616 1.02463 1.21153 0.95026 0.92280 0.93584 1.18487 0.92994 1.44538 0.81482 0.94519 1.25919 1.01102 0.98884 0.94918 1.69989 1.31723 1.49356 1.07937 0.86045 0.81796 0.78758 0.77283 1.19301 1.24578 1.18451 1.22162 0.94907 0.82038 1.02634 0.89994 0.91705 0.88383 0.83777 0.80852 0.81168 0.79902 0.90310 0.89790 0.92460 0.90309 0.92406 0.94212 0.91058 0.94538 0.96611 0.94454 0.92625 0.93089 0.87359 0.90038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.31 9.16 71.98 0.66 -2.65 16 2 C 0.08 2.06 2.05 29.85 0.06 2.12 16 3 H 0.12 2.94 6.14 -2.39 -0.01 2.93 16 4 O -0.30 -8.71 9.32 -71.18 -0.66 -9.38 16 5 C 0.29 7.05 7.45 84.79 0.63 7.68 16 6 C -0.20 -3.81 10.04 22.47 0.23 -3.59 16 7 C -0.04 -0.43 10.17 22.45 0.23 -0.20 16 8 C -0.20 -2.16 10.11 22.37 0.23 -1.94 16 9 C 0.13 1.88 11.18 84.63 0.95 2.83 16 10 N -0.56 -12.25 8.65 -308.95 -2.67 -14.92 16 11 C 0.52 16.03 7.05 87.66 0.62 16.65 16 12 O -0.57 -21.76 15.97 15.75 0.25 -21.51 16 13 N -0.60 -17.09 2.97 -818.07 -2.43 -19.51 16 14 C 0.12 3.36 6.45 86.51 0.56 3.92 16 15 C -0.12 -3.81 6.10 30.82 0.19 -3.62 16 16 C -0.10 -3.59 4.77 30.62 0.15 -3.44 16 17 C -0.10 -3.42 2.55 -10.71 -0.03 -3.45 16 18 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 19 C 0.14 5.14 4.03 86.38 0.35 5.49 16 20 N -0.62 -27.11 2.36 -726.95 -1.72 -28.82 16 21 C 0.12 4.49 10.70 127.77 1.37 5.86 16 22 C -0.25 -13.05 7.81 84.03 0.66 -12.39 16 23 H 0.04 2.22 8.06 -2.91 -0.02 2.20 16 24 C -0.01 -0.64 5.31 84.86 0.45 -0.19 16 25 N -0.95 -56.57 13.97 21.65 0.30 -56.27 16 26 Si 0.93 43.51 25.01 68.60 1.72 45.22 16 27 H -0.27 -11.47 6.68 99.48 0.66 -10.81 16 28 H -0.32 -15.41 7.11 99.48 0.71 -14.70 16 29 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 30 C 0.11 2.77 4.60 86.36 0.40 3.17 16 31 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 33 H 0.10 1.71 5.82 -2.39 -0.01 1.70 16 34 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 35 H 0.17 0.81 8.06 -2.91 -0.02 0.79 16 36 H 0.17 0.64 8.06 -2.91 -0.02 0.62 16 37 H 0.18 1.67 8.06 -2.91 -0.02 1.65 16 38 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.08 2.52 7.03 -2.39 -0.02 2.50 16 40 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 41 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 42 H 0.06 2.65 6.26 -2.39 -0.01 2.64 16 43 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.07 2.21 8.07 -2.39 -0.02 2.19 16 45 H 0.04 1.51 3.23 -2.39 -0.01 1.50 16 46 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 47 H 0.04 1.38 8.00 -2.39 -0.02 1.36 16 48 H 0.06 1.68 8.11 -2.39 -0.02 1.66 16 49 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 50 H 0.11 2.33 4.55 -2.39 -0.01 2.32 16 51 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -72.61 397.75 3.35 -69.26 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: 0.88 Total: 19.69 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: 7.68 Total: 16.23 kcal Atomic # 7 Polarization: -113.01 SS G_CDS: -6.51 Total: -119.52 kcal Atomic # 8 Polarization: -30.47 SS G_CDS: -0.41 Total: -30.88 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.72 Total: 45.22 kcal Total: -72.61 3.35 -69.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480087740.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.893 kcal (2) G-P(sol) polarization free energy of solvation -72.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds