Wall clock time and date at job start Wed Apr 1 2020 04:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.46928 * 2 1 4 4 O 1.42901 * 109.47523 * 239.99979 * 2 1 3 5 5 C 1.42903 * 113.99985 * 89.99489 * 4 2 1 6 6 C 1.50699 * 109.47222 * 180.02562 * 5 4 2 7 7 C 1.38648 * 120.78933 * 269.72448 * 6 5 4 8 8 C 1.38208 * 119.16494 * 179.79797 * 7 6 5 9 9 N 1.31869 * 120.75834 * 0.48155 * 8 7 6 10 10 C 1.31870 * 121.73132 * 359.74533 * 9 8 7 11 11 C 1.38202 * 120.75940 * 0.02562 * 10 9 8 12 12 C 1.50699 * 109.47268 * 119.99784 * 2 1 3 13 13 O 1.21280 * 119.99757 * 115.00155 * 12 2 1 14 14 N 1.34770 * 119.99976 * 295.27800 * 12 2 1 15 15 C 1.46501 * 120.00343 * 179.72116 * 14 12 2 16 16 C 1.53000 * 109.47579 * 175.12777 * 15 14 12 17 17 N 1.46501 * 110.01495 * 303.90276 * 16 15 14 18 18 C 1.36928 * 120.00460 * 301.44911 * 17 16 15 19 19 H 1.08008 * 119.99728 * 354.22485 * 18 17 16 20 20 C 1.38817 * 120.00437 * 174.22113 * 18 17 16 21 21 N 1.31620 * 119.99917 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99786 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.46997 * 89.99465 * 22 20 18 24 24 H 1.48496 * 109.47206 * 209.99841 * 22 20 18 25 25 H 1.48502 * 109.47232 * 330.00017 * 22 20 18 26 26 C 1.54266 * 110.03291 * 182.46119 * 16 15 14 27 27 C 1.54885 * 104.19651 * 217.10450 * 26 16 15 28 28 C 1.54893 * 102.74899 * 37.94595 * 27 26 16 29 29 C 1.53868 * 110.02959 * 65.29449 * 16 15 14 30 30 H 1.09003 * 109.47280 * 179.97438 * 1 2 3 31 31 H 1.08990 * 109.47286 * 300.00169 * 1 2 3 32 32 H 1.09007 * 109.47334 * 60.00281 * 1 2 3 33 33 H 1.08999 * 109.47412 * 300.00264 * 5 4 2 34 34 H 1.09002 * 109.46910 * 60.00764 * 5 4 2 35 35 H 1.07998 * 120.41950 * 359.97438 * 7 6 5 36 36 H 1.07998 * 119.62215 * 180.20581 * 8 7 6 37 37 H 1.07996 * 119.61932 * 179.97438 * 10 9 8 38 38 H 1.08007 * 120.42002 * 179.97438 * 11 10 9 39 39 H 0.97005 * 120.00315 * 359.72420 * 14 12 2 40 40 H 1.09001 * 109.47122 * 295.13522 * 15 14 12 41 41 H 1.09000 * 109.46800 * 55.12835 * 15 14 12 42 42 H 0.97003 * 119.99581 * 121.44763 * 17 16 15 43 43 H 0.97001 * 119.99378 * 180.02562 * 21 20 18 44 44 H 1.08996 * 110.48502 * 335.78636 * 26 16 15 45 45 H 1.08997 * 110.48372 * 98.43027 * 26 16 15 46 46 H 1.08996 * 110.75567 * 279.63201 * 27 26 16 47 47 H 1.08998 * 110.75616 * 156.25697 * 27 26 16 48 48 H 1.08999 * 110.48502 * 203.38477 * 28 27 26 49 49 H 1.08995 * 110.48924 * 80.73355 * 28 27 26 50 50 H 1.09004 * 110.03473 * 238.56771 * 29 16 15 51 51 H 1.08994 * 110.03599 * 0.02562 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.2001 0.1829 -2.2941 6 6 2.7003 -0.6284 -3.4614 7 6 4.0592 -0.8075 -3.6708 8 6 4.4808 -1.5614 -4.7497 9 7 3.6078 -2.0988 -5.5792 10 6 2.3085 -1.9456 -5.4137 11 6 1.8129 -1.2086 -4.3548 12 6 2.0323 -0.7103 1.2305 13 8 2.6530 -1.7466 1.1215 14 7 1.7871 -0.1970 2.4522 15 6 2.2702 -0.8907 3.6487 16 6 1.9674 -0.0439 4.8865 17 7 2.5580 1.2887 4.7390 18 6 3.9074 1.4224 4.5487 19 1 4.5486 0.5548 4.6003 20 6 4.4514 2.6730 4.2894 21 7 5.7485 2.8014 4.1070 22 14 3.3425 4.1736 4.2008 23 1 3.2221 4.7805 5.5508 24 1 3.9260 5.1655 3.2623 25 1 1.9977 3.7677 3.7189 26 6 2.5258 -0.7338 6.1483 27 6 1.4676 -0.4412 7.2409 28 6 0.1331 -0.5502 6.4622 29 6 0.4462 0.0729 5.0860 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8901 33 1 1.2538 0.6546 -2.5589 34 1 2.9320 0.9513 -2.0450 35 1 4.7791 -0.3658 -2.9977 36 1 5.5374 -1.7085 -4.9178 37 1 1.6239 -2.4005 -6.1142 38 1 0.7477 -1.0863 -4.2247 39 1 1.2907 0.6318 2.5394 40 1 1.7694 -1.8549 3.7368 41 1 3.3461 -1.0461 3.5691 42 1 1.9931 2.0764 4.7762 43 1 6.1286 3.6754 3.9262 44 1 2.6197 -1.8075 5.9860 45 1 3.4882 -0.3030 6.4243 46 1 1.5978 0.5624 7.6457 47 1 1.5143 -1.1878 8.0336 48 1 -0.6504 0.0147 6.9673 49 1 -0.1593 -1.5942 6.3506 50 1 0.1474 1.1211 5.0741 51 1 -0.0764 -0.4741 4.3014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482230595.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:59 Heat of formation + Delta-G solvation = -37.698056 kcal Electronic energy + Delta-G solvation = -30899.845005 eV Core-core repulsion = 26799.363514 eV Total energy + Delta-G solvation = -4100.481490 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.38196 -39.75458 -38.59823 -37.41561 -34.19017 -33.62994 -33.38317 -31.47689 -31.38906 -30.79085 -28.39904 -28.19576 -27.05999 -25.05107 -23.66480 -23.53647 -22.80790 -22.16347 -20.60977 -19.77663 -18.72845 -17.62974 -17.52680 -17.12964 -16.65796 -16.47654 -15.78429 -15.67862 -15.26596 -15.03476 -14.75215 -14.48560 -14.25098 -14.04651 -13.95226 -13.80381 -13.33251 -13.12774 -12.93772 -12.83047 -12.71370 -12.55731 -12.19481 -11.96881 -11.86680 -11.70424 -11.39354 -11.27349 -10.91481 -10.85351 -10.71211 -10.50502 -10.42919 -10.26783 -10.05914 -10.03454 -9.90974 -9.67985 -9.60621 -9.32608 -9.25035 -8.97077 -8.50429 -7.37189 -5.83401 -3.20751 0.94124 0.96634 2.99195 3.07446 3.24188 3.29268 3.36682 3.64995 4.01561 4.28183 4.49020 4.49501 4.54340 4.78224 4.85902 4.88636 4.93962 4.96465 4.99036 5.01797 5.10936 5.11339 5.19815 5.35713 5.42564 5.44630 5.48105 5.55695 5.60266 5.64930 5.76375 5.80200 5.82405 5.92929 5.95439 6.05458 6.12837 6.14567 6.17331 6.31585 6.42260 6.45038 6.49767 6.65837 6.71851 6.86080 6.92224 7.03463 7.76996 7.92382 7.96202 8.35033 8.64570 9.12110 9.83656 10.02437 11.34572 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011814 B = 0.002709 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.592499 B =10333.117594 C =11504.385535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.069 3.931 3 H 0.088 0.912 4 O -0.348 6.348 5 C 0.096 3.904 6 C -0.041 4.041 7 C -0.147 4.147 8 C 0.096 3.904 9 N -0.484 5.484 10 C 0.093 3.907 11 C -0.153 4.153 12 C 0.513 3.487 13 O -0.530 6.530 14 N -0.700 5.700 15 C 0.123 3.877 16 C 0.195 3.805 17 N -0.736 5.736 18 C -0.238 4.238 19 H 0.091 0.909 20 C 0.008 3.992 21 N -0.930 5.930 22 Si 0.880 3.120 23 H -0.285 1.285 24 H -0.293 1.293 25 H -0.278 1.278 26 C -0.131 4.131 27 C -0.118 4.118 28 C -0.121 4.121 29 C -0.129 4.129 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.139 0.861 36 H 0.158 0.842 37 H 0.156 0.844 38 H 0.135 0.865 39 H 0.397 0.603 40 H 0.053 0.947 41 H 0.073 0.927 42 H 0.360 0.640 43 H 0.259 0.741 44 H 0.056 0.944 45 H 0.084 0.916 46 H 0.066 0.934 47 H 0.057 0.943 48 H 0.058 0.942 49 H 0.061 0.939 50 H 0.064 0.936 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.792 -4.579 -9.932 17.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.007 3.993 3 H 0.106 0.894 4 O -0.266 6.266 5 C 0.020 3.980 6 C -0.049 4.049 7 C -0.167 4.167 8 C -0.060 4.060 9 N -0.194 5.194 10 C -0.064 4.064 11 C -0.173 4.173 12 C 0.297 3.703 13 O -0.406 6.406 14 N -0.351 5.351 15 C -0.003 4.003 16 C 0.103 3.897 17 N -0.379 5.379 18 C -0.368 4.368 19 H 0.109 0.891 20 C -0.188 4.188 21 N -0.577 5.577 22 Si 0.711 3.289 23 H -0.212 1.212 24 H -0.220 1.220 25 H -0.205 1.205 26 C -0.171 4.171 27 C -0.156 4.156 28 C -0.159 4.159 29 C -0.167 4.167 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.157 0.843 36 H 0.175 0.825 37 H 0.173 0.827 38 H 0.153 0.847 39 H 0.232 0.768 40 H 0.072 0.928 41 H 0.092 0.908 42 H 0.194 0.806 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.102 0.898 46 H 0.085 0.915 47 H 0.075 0.925 48 H 0.077 0.923 49 H 0.080 0.920 50 H 0.083 0.917 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.737 -6.045 -10.764 17.737 hybrid contribution -1.165 2.517 0.745 2.872 sum -13.902 -3.528 -10.019 17.495 Atomic orbital electron populations 1.22217 0.93760 1.03630 1.02978 1.21951 0.94846 0.96762 0.85697 0.89399 1.88108 1.86661 1.33382 1.18428 1.21427 1.00117 0.91799 0.84706 1.19984 0.93701 0.96569 0.94678 1.22181 0.96016 0.99562 0.98970 1.22791 0.99731 0.93050 0.90475 1.67659 1.03353 1.19697 1.28647 1.22741 0.92010 0.95560 0.96108 1.22063 1.00912 0.98409 0.95875 1.20092 0.80293 0.85704 0.84220 1.90695 1.39832 1.23638 1.86448 1.45613 1.56999 1.27381 1.05137 1.21870 1.00388 0.93883 0.84149 1.20429 0.90658 0.86581 0.92029 1.42900 1.06090 1.00817 1.88130 1.18943 0.82025 0.95301 1.40530 0.89088 1.24667 0.95390 0.97067 1.01694 1.69701 1.09806 1.23159 1.55055 0.86644 0.80181 0.84406 0.77691 1.21215 1.21970 1.20454 1.22795 1.00030 0.99173 0.95066 1.22405 0.94560 1.01260 0.97362 1.22313 0.97680 1.00159 0.95714 1.22476 0.95964 1.00905 0.97341 0.91125 0.90815 0.91506 0.91840 0.91501 0.84306 0.82460 0.82674 0.84701 0.76843 0.92849 0.90845 0.80620 0.93092 0.92542 0.89766 0.91516 0.92456 0.92336 0.92029 0.91695 0.91702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.70 9.48 37.16 0.35 -1.35 16 2 C 0.07 0.94 3.13 -27.89 -0.09 0.85 16 3 H 0.09 1.09 7.79 -51.93 -0.40 0.69 16 4 O -0.35 -5.16 9.51 -55.09 -0.52 -5.68 16 5 C 0.10 1.08 5.92 36.01 0.21 1.29 16 6 C -0.04 -0.47 5.55 -104.32 -0.58 -1.05 16 7 C -0.15 -1.69 9.82 -39.44 -0.39 -2.08 16 8 C 0.10 1.07 11.18 -17.55 -0.20 0.87 16 9 N -0.48 -5.81 10.36 -13.25 -0.14 -5.94 16 10 C 0.09 0.94 11.18 -17.55 -0.20 0.75 16 11 C -0.15 -1.53 9.82 -39.44 -0.39 -1.92 16 12 C 0.51 9.06 7.18 -10.99 -0.08 8.98 16 13 O -0.53 -11.66 16.50 -14.31 -0.24 -11.90 16 14 N -0.70 -11.55 5.06 -60.29 -0.30 -11.86 16 15 C 0.12 2.17 3.99 -4.04 -0.02 2.15 16 16 C 0.19 3.26 0.68 -130.70 -0.09 3.17 16 17 N -0.74 -15.04 4.55 -46.20 -0.21 -15.25 16 18 C -0.24 -6.07 8.87 -15.06 -0.13 -6.21 16 19 H 0.09 2.59 7.46 -52.48 -0.39 2.19 16 20 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 21 N -0.93 -27.99 13.97 55.49 0.78 -27.21 16 22 Si 0.88 20.47 27.68 -169.99 -4.71 15.77 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 25 H -0.28 -5.84 6.61 56.52 0.37 -5.47 16 26 C -0.13 -2.13 5.94 -25.07 -0.15 -2.28 16 27 C -0.12 -1.63 6.91 -24.74 -0.17 -1.80 16 28 C -0.12 -1.46 6.83 -25.06 -0.17 -1.63 16 29 C -0.13 -1.73 5.80 -25.61 -0.15 -1.88 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.65 7.91 -51.93 -0.41 0.24 16 32 H 0.07 0.54 7.87 -51.93 -0.41 0.13 16 33 H 0.06 0.55 7.83 -51.93 -0.41 0.14 16 34 H 0.07 0.71 8.04 -51.93 -0.42 0.29 16 35 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 36 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 37 H 0.16 1.11 8.06 -52.49 -0.42 0.69 16 38 H 0.14 1.03 8.06 -52.48 -0.42 0.60 16 39 H 0.40 5.90 7.76 -40.82 -0.32 5.59 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 1.57 7.50 -51.93 -0.39 1.18 16 42 H 0.36 7.25 5.20 -40.82 -0.21 7.04 16 43 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 44 H 0.06 0.85 7.85 -51.93 -0.41 0.44 16 45 H 0.08 1.62 7.11 -51.93 -0.37 1.26 16 46 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 50 H 0.06 0.87 7.44 -51.93 -0.39 0.48 16 51 H 0.06 0.79 7.55 -51.93 -0.39 0.40 16 LS Contribution 412.94 15.07 6.22 6.22 Total: -1.00 -34.03 412.94 -9.74 -43.77 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: -8.31 Total: 14.10 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -2.32 Total: -2.01 kcal Atomic # 7 Polarization: -60.39 SS G_CDS: 0.12 Total: -60.27 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.76 Total: -17.58 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.71 Total: 15.77 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.03 -9.74 -43.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482230595.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.073 kcal (2) G-P(sol) polarization free energy of solvation -34.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds