Wall clock time and date at job start Wed Apr 1 2020 04:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.46928 * 2 1 4 4 O 1.42901 * 109.47523 * 239.99979 * 2 1 3 5 5 C 1.42903 * 113.99985 * 89.99489 * 4 2 1 6 6 C 1.50699 * 109.47222 * 180.02562 * 5 4 2 7 7 C 1.38648 * 120.78933 * 269.72448 * 6 5 4 8 8 C 1.38208 * 119.16494 * 179.79797 * 7 6 5 9 9 N 1.31869 * 120.75834 * 0.48155 * 8 7 6 10 10 C 1.31870 * 121.73132 * 359.74533 * 9 8 7 11 11 C 1.38202 * 120.75940 * 0.02562 * 10 9 8 12 12 C 1.50699 * 109.47268 * 119.99784 * 2 1 3 13 13 O 1.21280 * 119.99757 * 115.00155 * 12 2 1 14 14 N 1.34770 * 119.99976 * 295.27800 * 12 2 1 15 15 C 1.46501 * 120.00343 * 179.72116 * 14 12 2 16 16 C 1.53000 * 109.47579 * 175.12777 * 15 14 12 17 17 N 1.46501 * 110.01495 * 303.90276 * 16 15 14 18 18 C 1.36928 * 120.00460 * 301.44911 * 17 16 15 19 19 H 1.08008 * 119.99728 * 354.22485 * 18 17 16 20 20 C 1.38817 * 120.00437 * 174.22113 * 18 17 16 21 21 N 1.31620 * 119.99917 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99786 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.46997 * 89.99465 * 22 20 18 24 24 H 1.48496 * 109.47206 * 209.99841 * 22 20 18 25 25 H 1.48502 * 109.47232 * 330.00017 * 22 20 18 26 26 C 1.54266 * 110.03291 * 182.46119 * 16 15 14 27 27 C 1.54885 * 104.19651 * 217.10450 * 26 16 15 28 28 C 1.54893 * 102.74899 * 37.94595 * 27 26 16 29 29 C 1.53868 * 110.02959 * 65.29449 * 16 15 14 30 30 H 1.09003 * 109.47280 * 179.97438 * 1 2 3 31 31 H 1.08990 * 109.47286 * 300.00169 * 1 2 3 32 32 H 1.09007 * 109.47334 * 60.00281 * 1 2 3 33 33 H 1.08999 * 109.47412 * 300.00264 * 5 4 2 34 34 H 1.09002 * 109.46910 * 60.00764 * 5 4 2 35 35 H 1.07998 * 120.41950 * 359.97438 * 7 6 5 36 36 H 1.07998 * 119.62215 * 180.20581 * 8 7 6 37 37 H 1.07996 * 119.61932 * 179.97438 * 10 9 8 38 38 H 1.08007 * 120.42002 * 179.97438 * 11 10 9 39 39 H 0.97005 * 120.00315 * 359.72420 * 14 12 2 40 40 H 1.09001 * 109.47122 * 295.13522 * 15 14 12 41 41 H 1.09000 * 109.46800 * 55.12835 * 15 14 12 42 42 H 0.97003 * 119.99581 * 121.44763 * 17 16 15 43 43 H 0.97001 * 119.99378 * 180.02562 * 21 20 18 44 44 H 1.08996 * 110.48502 * 335.78636 * 26 16 15 45 45 H 1.08997 * 110.48372 * 98.43027 * 26 16 15 46 46 H 1.08996 * 110.75567 * 279.63201 * 27 26 16 47 47 H 1.08998 * 110.75616 * 156.25697 * 27 26 16 48 48 H 1.08999 * 110.48502 * 203.38477 * 28 27 26 49 49 H 1.08995 * 110.48924 * 80.73355 * 28 27 26 50 50 H 1.09004 * 110.03473 * 238.56771 * 29 16 15 51 51 H 1.08994 * 110.03599 * 0.02562 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.2001 0.1829 -2.2941 6 6 2.7003 -0.6284 -3.4614 7 6 4.0592 -0.8075 -3.6708 8 6 4.4808 -1.5614 -4.7497 9 7 3.6078 -2.0988 -5.5792 10 6 2.3085 -1.9456 -5.4137 11 6 1.8129 -1.2086 -4.3548 12 6 2.0323 -0.7103 1.2305 13 8 2.6530 -1.7466 1.1215 14 7 1.7871 -0.1970 2.4522 15 6 2.2702 -0.8907 3.6487 16 6 1.9674 -0.0439 4.8865 17 7 2.5580 1.2887 4.7390 18 6 3.9074 1.4224 4.5487 19 1 4.5486 0.5548 4.6003 20 6 4.4514 2.6730 4.2894 21 7 5.7485 2.8014 4.1070 22 14 3.3425 4.1736 4.2008 23 1 3.2221 4.7805 5.5508 24 1 3.9260 5.1655 3.2623 25 1 1.9977 3.7677 3.7189 26 6 2.5258 -0.7338 6.1483 27 6 1.4676 -0.4412 7.2409 28 6 0.1331 -0.5502 6.4622 29 6 0.4462 0.0729 5.0860 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8901 33 1 1.2538 0.6546 -2.5589 34 1 2.9320 0.9513 -2.0450 35 1 4.7791 -0.3658 -2.9977 36 1 5.5374 -1.7085 -4.9178 37 1 1.6239 -2.4005 -6.1142 38 1 0.7477 -1.0863 -4.2247 39 1 1.2907 0.6318 2.5394 40 1 1.7694 -1.8549 3.7368 41 1 3.3461 -1.0461 3.5691 42 1 1.9931 2.0764 4.7762 43 1 6.1286 3.6754 3.9262 44 1 2.6197 -1.8075 5.9860 45 1 3.4882 -0.3030 6.4243 46 1 1.5978 0.5624 7.6457 47 1 1.5143 -1.1878 8.0336 48 1 -0.6504 0.0147 6.9673 49 1 -0.1593 -1.5942 6.3506 50 1 0.1474 1.1211 5.0741 51 1 -0.0764 -0.4741 4.3014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482230595.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:58 Heat of formation + Delta-G solvation = -60.780810 kcal Electronic energy + Delta-G solvation = -30900.845948 eV Core-core repulsion = 26799.363514 eV Total energy + Delta-G solvation = -4101.482434 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.29532 -40.99585 -39.86219 -38.58933 -35.62808 -35.20164 -34.45595 -32.97014 -32.18276 -32.14851 -29.64198 -29.58123 -27.90910 -26.41324 -25.06402 -24.45065 -24.20289 -22.99564 -21.83357 -21.08645 -20.16832 -19.50036 -18.66352 -18.20003 -17.53309 -17.46349 -17.05866 -16.61371 -16.41262 -16.33891 -16.15842 -15.95394 -15.53252 -15.23095 -14.81436 -14.78294 -14.58849 -14.49624 -14.25475 -14.13317 -13.79790 -13.63560 -13.44473 -13.28589 -13.02008 -12.97516 -12.52645 -12.48907 -12.29382 -12.25153 -11.94487 -11.91064 -11.85700 -11.60856 -11.43351 -11.31665 -11.12054 -10.91906 -10.78647 -10.51038 -10.48458 -10.12079 -9.98411 -9.27478 -7.95129 -5.29968 0.10072 0.16551 1.38192 1.44552 1.51873 1.62289 1.95136 2.53162 2.70464 3.07231 3.33649 3.52621 3.55009 3.62885 3.72905 3.75532 3.79111 3.90891 3.95054 4.06965 4.07979 4.09414 4.16874 4.35690 4.39383 4.43029 4.54996 4.65274 4.66344 4.70593 4.71652 4.80316 4.85256 4.86209 4.93663 4.95703 5.03456 5.10924 5.18672 5.19539 5.27104 5.32181 5.37959 5.46553 5.55182 5.63075 5.72086 5.87809 5.97490 6.27565 6.63162 6.96212 7.14919 7.29187 7.87741 8.08938 9.26843 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011814 B = 0.002709 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.592499 B =10333.117594 C =11504.385535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.072 3.928 3 H 0.102 0.898 4 O -0.379 6.379 5 C 0.094 3.906 6 C -0.059 4.059 7 C -0.166 4.166 8 C 0.085 3.915 9 N -0.508 5.508 10 C 0.087 3.913 11 C -0.150 4.150 12 C 0.503 3.497 13 O -0.585 6.585 14 N -0.691 5.691 15 C 0.130 3.870 16 C 0.190 3.810 17 N -0.731 5.731 18 C -0.207 4.207 19 H 0.044 0.956 20 C -0.068 4.068 21 N -0.990 5.990 22 Si 0.952 3.048 23 H -0.286 1.286 24 H -0.307 1.307 25 H -0.233 1.233 26 C -0.134 4.134 27 C -0.114 4.114 28 C -0.112 4.112 29 C -0.121 4.121 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.065 0.935 35 H 0.137 0.863 36 H 0.174 0.826 37 H 0.185 0.815 38 H 0.163 0.837 39 H 0.409 0.591 40 H 0.068 0.932 41 H 0.022 0.978 42 H 0.368 0.632 43 H 0.253 0.747 44 H 0.064 0.936 45 H 0.041 0.959 46 H 0.055 0.945 47 H 0.074 0.926 48 H 0.081 0.919 49 H 0.077 0.923 50 H 0.075 0.925 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.827 -3.700 -10.262 21.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.011 3.989 3 H 0.120 0.880 4 O -0.298 6.298 5 C 0.018 3.982 6 C -0.067 4.067 7 C -0.186 4.186 8 C -0.071 4.071 9 N -0.217 5.217 10 C -0.070 4.070 11 C -0.170 4.170 12 C 0.289 3.711 13 O -0.464 6.464 14 N -0.342 5.342 15 C 0.003 3.997 16 C 0.099 3.901 17 N -0.375 5.375 18 C -0.338 4.338 19 H 0.062 0.938 20 C -0.259 4.259 21 N -0.641 5.641 22 Si 0.780 3.220 23 H -0.213 1.213 24 H -0.234 1.234 25 H -0.156 1.156 26 C -0.174 4.174 27 C -0.152 4.152 28 C -0.149 4.149 29 C -0.159 4.159 30 H 0.080 0.920 31 H 0.110 0.890 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.083 0.917 35 H 0.155 0.845 36 H 0.191 0.809 37 H 0.202 0.798 38 H 0.181 0.819 39 H 0.246 0.754 40 H 0.086 0.914 41 H 0.040 0.960 42 H 0.203 0.797 43 H 0.062 0.938 44 H 0.083 0.917 45 H 0.060 0.940 46 H 0.074 0.926 47 H 0.093 0.907 48 H 0.100 0.900 49 H 0.096 0.904 50 H 0.094 0.906 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -17.857 -5.175 -11.076 21.641 hybrid contribution 0.494 2.078 0.872 2.307 sum -17.363 -3.098 -10.204 20.376 Atomic orbital electron populations 1.22208 0.90340 1.03834 1.05287 1.22029 0.97228 0.96149 0.83477 0.88047 1.88066 1.87156 1.35089 1.19452 1.21611 1.01793 0.91304 0.83486 1.20237 0.93940 0.97220 0.95331 1.22326 0.96597 1.00272 0.99416 1.23075 1.00653 0.92967 0.90385 1.67699 1.04410 1.20410 1.29225 1.23296 0.91858 0.95208 0.96635 1.22372 1.02125 0.97389 0.95066 1.21034 0.79190 0.85213 0.85638 1.90664 1.42253 1.26239 1.87290 1.45557 1.56490 1.27543 1.04659 1.21711 0.97473 0.95209 0.85270 1.20694 0.93540 0.84462 0.91356 1.42798 1.04044 1.02835 1.87836 1.18722 0.83941 0.93487 1.37660 0.93750 1.25510 0.96845 1.00778 1.02732 1.69927 1.12572 1.23563 1.58070 0.85458 0.79993 0.79307 0.77244 1.21293 1.23418 1.15616 1.22763 0.99065 0.99383 0.96200 1.22379 0.94595 1.01165 0.97010 1.22305 0.96845 1.01519 0.94267 1.22441 0.92235 1.02193 0.99068 0.91960 0.89036 0.88639 0.88483 0.91667 0.84519 0.80928 0.79785 0.81906 0.75433 0.91370 0.95985 0.79699 0.93822 0.91694 0.94004 0.92614 0.90687 0.90020 0.90404 0.90618 0.89743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 9.48 71.98 0.68 -1.94 16 2 C 0.07 1.84 3.13 29.85 0.09 1.94 16 3 H 0.10 2.29 7.79 -2.39 -0.02 2.27 16 4 O -0.38 -10.90 9.51 -129.99 -1.24 -12.13 16 5 C 0.09 1.95 5.92 71.24 0.42 2.38 16 6 C -0.06 -1.31 5.55 -19.67 -0.11 -1.42 16 7 C -0.17 -3.91 9.82 22.36 0.22 -3.69 16 8 C 0.09 1.92 11.18 84.68 0.95 2.87 16 9 N -0.51 -11.94 10.36 -195.85 -2.03 -13.97 16 10 C 0.09 1.63 11.18 84.68 0.95 2.57 16 11 C -0.15 -2.71 9.82 22.36 0.22 -2.49 16 12 C 0.50 17.72 7.18 87.66 0.63 18.35 16 13 O -0.58 -26.71 16.50 15.96 0.26 -26.44 16 14 N -0.69 -22.18 5.06 -463.07 -2.34 -24.52 16 15 C 0.13 4.63 3.99 86.38 0.34 4.97 16 16 C 0.19 6.16 0.68 4.33 0.00 6.17 16 17 N -0.73 -29.33 4.55 -300.08 -1.37 -30.70 16 18 C -0.21 -10.94 8.87 84.04 0.75 -10.20 16 19 H 0.04 2.73 7.46 -2.91 -0.02 2.71 16 20 C -0.07 -3.82 5.50 84.86 0.47 -3.36 16 21 N -0.99 -62.65 13.97 21.65 0.30 -62.34 16 22 Si 0.95 42.01 27.68 68.60 1.90 43.91 16 23 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 24 H -0.31 -14.20 7.11 99.48 0.71 -13.49 16 25 H -0.23 -8.41 6.61 99.48 0.66 -7.75 16 26 C -0.13 -4.39 5.94 31.67 0.19 -4.20 16 27 C -0.11 -2.86 6.91 31.89 0.22 -2.64 16 28 C -0.11 -2.20 6.83 31.67 0.22 -1.98 16 29 C -0.12 -2.77 5.80 31.32 0.18 -2.58 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.09 1.18 7.91 -2.39 -0.02 1.16 16 32 H 0.09 1.06 7.87 -2.38 -0.02 1.04 16 33 H 0.10 1.33 7.83 -2.39 -0.02 1.31 16 34 H 0.07 1.34 8.04 -2.39 -0.02 1.32 16 35 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 36 H 0.17 3.05 8.06 -2.91 -0.02 3.03 16 37 H 0.19 2.18 8.06 -2.91 -0.02 2.15 16 38 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 39 H 0.41 11.05 7.76 -92.70 -0.72 10.33 16 40 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.02 1.00 7.50 -2.39 -0.02 0.98 16 42 H 0.37 13.74 5.20 -92.71 -0.48 13.25 16 43 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 44 H 0.06 1.98 7.85 -2.39 -0.02 1.96 16 45 H 0.04 1.70 7.11 -2.39 -0.02 1.69 16 46 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 48 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 49 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 50 H 0.08 1.62 7.44 -2.38 -0.02 1.61 16 51 H 0.08 1.65 7.55 -2.39 -0.02 1.63 16 Total: -1.00 -81.11 412.94 1.59 -79.51 By element: Atomic # 1 Polarization: 42.27 SS G_CDS: -0.32 Total: 41.95 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: 6.42 Total: 4.73 kcal Atomic # 7 Polarization: -126.09 SS G_CDS: -5.43 Total: -131.53 kcal Atomic # 8 Polarization: -37.60 SS G_CDS: -0.97 Total: -38.58 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 1.90 Total: 43.91 kcal Total: -81.11 1.59 -79.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482230595.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.734 kcal (2) G-P(sol) polarization free energy of solvation -81.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds