Wall clock time and date at job start Wed Apr 1 2020 04:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46949 * 2 1 4 4 O 1.42906 * 109.47128 * 119.99676 * 2 1 3 5 5 C 1.42901 * 113.99785 * 270.00284 * 4 2 1 6 6 C 1.50700 * 109.46642 * 179.97438 * 5 4 2 7 7 C 1.38657 * 120.79170 * 269.71929 * 6 5 4 8 8 C 1.38200 * 119.16401 * 179.80062 * 7 6 5 9 9 N 1.31872 * 120.76231 * 0.48698 * 8 7 6 10 10 C 1.31870 * 121.73052 * 359.74290 * 9 8 7 11 11 C 1.38205 * 120.76114 * 0.02562 * 10 9 8 12 12 C 1.50699 * 109.47216 * 239.99753 * 2 1 3 13 13 O 1.21277 * 119.99965 * 244.99605 * 12 2 1 14 14 N 1.34774 * 119.99731 * 65.00420 * 12 2 1 15 15 C 1.46504 * 119.99844 * 179.97438 * 14 12 2 16 16 C 1.52998 * 109.47225 * 175.53634 * 15 14 12 17 17 N 1.46506 * 110.53641 * 57.61931 * 16 15 14 18 18 C 1.36933 * 120.00401 * 58.62243 * 17 16 15 19 19 H 1.08006 * 119.99300 * 6.53639 * 18 17 16 20 20 C 1.38803 * 120.00453 * 186.53837 * 18 17 16 21 21 N 1.31626 * 119.99874 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00359 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46959 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47222 * 119.99711 * 22 20 18 25 25 H 1.48500 * 109.47020 * 240.00051 * 22 20 18 26 26 C 1.54889 * 110.48686 * 180.22825 * 16 15 14 27 27 C 1.54895 * 102.74848 * 156.62225 * 26 16 15 28 28 C 1.54272 * 104.19256 * 322.05887 * 27 26 16 29 29 C 1.53871 * 106.60145 * 23.60982 * 28 27 26 30 30 H 1.09000 * 109.46832 * 60.00381 * 1 2 3 31 31 H 1.09004 * 109.46949 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47092 * 300.00233 * 1 2 3 33 33 H 1.08995 * 109.47277 * 299.99390 * 5 4 2 34 34 H 1.08999 * 109.46912 * 60.00308 * 5 4 2 35 35 H 1.07997 * 120.41395 * 0.02562 * 7 6 5 36 36 H 1.07997 * 119.62352 * 180.20556 * 8 7 6 37 37 H 1.07991 * 119.62111 * 180.02562 * 10 9 8 38 38 H 1.07997 * 120.42295 * 179.97438 * 11 10 9 39 39 H 0.97003 * 120.00165 * 359.97438 * 14 12 2 40 40 H 1.08997 * 109.46833 * 55.53835 * 15 14 12 41 41 H 1.09005 * 109.47165 * 295.53940 * 15 14 12 42 42 H 0.96999 * 119.99526 * 238.62385 * 17 16 15 43 43 H 0.96999 * 119.99774 * 179.97438 * 21 20 18 44 44 H 1.08995 * 110.75801 * 274.93614 * 26 16 15 45 45 H 1.09001 * 110.75426 * 38.30728 * 26 16 15 46 46 H 1.08994 * 110.48349 * 203.38368 * 27 26 16 47 47 H 1.08994 * 110.48252 * 80.73645 * 27 26 16 48 48 H 1.09001 * 110.03304 * 264.32241 * 28 27 26 49 49 H 1.09006 * 110.03030 * 142.89386 * 28 27 26 50 50 H 1.08998 * 110.03485 * 240.71240 * 29 28 27 51 51 H 1.08996 * 110.03357 * 119.27899 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 1.1669 5 6 2.2000 0.1831 2.2941 6 6 2.7002 -0.6283 3.4614 7 6 1.8128 -1.2037 4.3580 8 6 2.3082 -1.9446 5.4143 9 7 3.6074 -2.0986 5.5794 10 6 4.4805 -1.5621 4.7494 11 6 4.0590 -0.8121 3.6678 12 6 2.0324 -0.7105 -1.2304 13 8 2.6531 -1.7466 -1.1214 14 7 1.7920 -0.1942 -2.4519 15 6 2.2808 -0.8845 -3.6481 16 6 1.7819 -0.1557 -4.8973 17 7 2.2204 1.2422 -4.8863 18 6 3.5557 1.5406 -4.8316 19 1 4.2888 0.7506 -4.9030 20 6 3.9671 2.8580 -4.6843 21 7 3.0736 3.8207 -4.5977 22 14 5.7887 3.2651 -4.6103 23 1 6.5806 2.0145 -4.7297 24 1 6.1371 4.1805 -5.7265 25 1 6.0966 3.9236 -3.3154 26 6 2.2812 -0.8703 -6.1776 27 6 1.2485 -0.4246 -7.2426 28 6 -0.0947 -0.4095 -6.4840 29 6 0.2444 -0.2385 -4.9929 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 2.9319 0.9514 2.0451 34 1 1.2537 0.6547 2.5588 35 1 0.7479 -1.0776 4.2305 36 1 1.6236 -2.3988 6.1152 37 1 5.5370 -1.7104 4.9168 38 1 4.7787 -0.3749 2.9917 39 1 1.2953 0.6345 -2.5391 40 1 1.9100 -1.9095 -3.6530 41 1 3.3709 -0.8926 -3.6430 42 1 1.5648 1.9564 -4.9177 43 1 3.3612 4.7413 -4.4943 44 1 3.2820 -0.5307 -6.4442 45 1 2.2608 -1.9525 -6.0488 46 1 1.2147 -1.1402 -8.0640 47 1 1.4886 0.5719 -7.6131 48 1 -0.6229 -1.3499 -6.6413 49 1 -0.7071 0.4250 -6.8257 50 1 -0.1192 -1.0959 -4.4265 51 1 -0.2033 0.6789 -4.6110 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482230596.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:03 Heat of formation + Delta-G solvation = -44.302025 kcal Electronic energy + Delta-G solvation = -30775.431672 eV Core-core repulsion = 26674.663812 eV Total energy + Delta-G solvation = -4100.767860 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.39902 -39.69817 -38.46224 -37.39604 -34.11088 -33.61983 -33.31375 -31.43277 -31.40225 -30.38930 -28.27421 -27.92250 -27.06400 -24.97959 -23.74178 -23.65862 -23.02353 -22.17712 -20.35339 -19.64386 -18.75566 -17.52474 -17.19717 -16.93244 -16.66398 -16.44857 -15.80175 -15.70869 -15.24368 -14.97295 -14.67042 -14.41644 -14.19416 -13.98221 -13.90438 -13.79820 -13.45043 -13.30255 -12.87187 -12.81132 -12.64287 -12.44545 -12.13869 -11.84717 -11.67871 -11.40474 -11.33615 -11.11910 -10.87758 -10.79156 -10.67894 -10.52158 -10.32949 -10.05742 -10.02869 -9.91697 -9.85779 -9.70967 -9.70300 -9.35112 -9.23907 -8.94913 -8.45887 -7.07283 -5.87062 -3.16174 0.92147 0.94109 3.00193 3.08575 3.36457 3.44797 3.45542 3.64352 4.03151 4.25781 4.47512 4.50750 4.55138 4.82340 4.84899 4.91203 4.96058 5.06718 5.10376 5.11438 5.16180 5.18792 5.21461 5.40754 5.49998 5.52139 5.57564 5.60993 5.62755 5.74226 5.76978 5.90729 5.95238 5.98965 6.10716 6.11414 6.19802 6.23909 6.32819 6.42792 6.47267 6.52173 6.61174 6.75629 6.78911 6.88718 6.97332 7.07379 7.66167 7.74576 8.02454 8.31757 8.66946 9.43881 9.97313 10.33265 11.34873 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011141 B = 0.002657 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2512.525992 B =10537.210587 C =12044.344992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.069 3.931 3 H 0.089 0.911 4 O -0.349 6.349 5 C 0.096 3.904 6 C -0.041 4.041 7 C -0.152 4.152 8 C 0.093 3.907 9 N -0.484 5.484 10 C 0.096 3.904 11 C -0.148 4.148 12 C 0.511 3.489 13 O -0.536 6.536 14 N -0.697 5.697 15 C 0.122 3.878 16 C 0.188 3.812 17 N -0.708 5.708 18 C -0.231 4.231 19 H 0.070 0.930 20 C -0.009 4.009 21 N -0.931 5.931 22 Si 0.900 3.100 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.293 1.293 26 C -0.131 4.131 27 C -0.113 4.113 28 C -0.119 4.119 29 C -0.123 4.123 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.136 0.864 36 H 0.156 0.844 37 H 0.157 0.843 38 H 0.138 0.862 39 H 0.403 0.597 40 H 0.055 0.945 41 H 0.065 0.935 42 H 0.384 0.616 43 H 0.254 0.746 44 H 0.074 0.926 45 H 0.053 0.947 46 H 0.051 0.949 47 H 0.069 0.931 48 H 0.053 0.947 49 H 0.057 0.943 50 H 0.062 0.938 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.821 -6.750 11.418 15.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.008 3.992 3 H 0.107 0.893 4 O -0.267 6.267 5 C 0.020 3.980 6 C -0.049 4.049 7 C -0.172 4.172 8 C -0.064 4.064 9 N -0.194 5.194 10 C -0.061 4.061 11 C -0.168 4.168 12 C 0.295 3.705 13 O -0.413 6.413 14 N -0.349 5.349 15 C -0.003 4.003 16 C 0.096 3.904 17 N -0.349 5.349 18 C -0.362 4.362 19 H 0.088 0.912 20 C -0.205 4.205 21 N -0.579 5.579 22 Si 0.731 3.269 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.220 1.220 26 C -0.171 4.171 27 C -0.151 4.151 28 C -0.156 4.156 29 C -0.161 4.161 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.154 0.846 36 H 0.174 0.826 37 H 0.175 0.825 38 H 0.156 0.844 39 H 0.239 0.761 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.219 0.781 43 H 0.064 0.936 44 H 0.093 0.907 45 H 0.072 0.928 46 H 0.070 0.930 47 H 0.088 0.912 48 H 0.072 0.928 49 H 0.076 0.924 50 H 0.080 0.920 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.853 -8.160 12.212 16.207 hybrid contribution 0.309 1.850 -0.801 2.040 sum -6.544 -6.310 11.411 14.589 Atomic orbital electron populations 1.22213 0.93652 1.03562 1.03149 1.21959 0.95004 0.96726 0.85521 0.89305 1.88102 1.86689 1.33445 1.18478 1.21420 1.00171 0.91744 0.84713 1.20001 0.93677 0.96513 0.94685 1.22076 1.00969 0.98343 0.95823 1.22749 0.91994 0.95498 0.96121 1.67659 1.03365 1.19710 1.28641 1.22777 0.99703 0.93137 0.90490 1.22158 0.96006 0.99670 0.98994 1.20136 0.80388 0.85649 0.84357 1.90681 1.40328 1.23743 1.86565 1.45672 1.56752 1.27559 1.04909 1.21820 0.99725 0.94322 0.84480 1.20639 0.91338 0.87054 0.91370 1.42411 1.05217 0.99463 1.87847 1.19137 0.83588 0.91980 1.41506 0.91206 1.24681 0.97167 0.95899 1.02722 1.69661 1.31715 0.99402 1.57167 0.86221 0.85473 0.78004 0.77153 1.20541 1.21944 1.21999 1.22883 0.99899 0.98195 0.96150 1.22196 0.94467 1.01291 0.97126 1.22058 0.97694 1.00480 0.95407 1.22379 0.96074 1.01315 0.96372 0.90587 0.91227 0.91521 0.91580 0.91756 0.84635 0.82644 0.82527 0.84423 0.76128 0.92695 0.91700 0.78093 0.93636 0.90741 0.92811 0.93045 0.91195 0.92781 0.92428 0.91959 0.91700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.77 9.48 37.16 0.35 -1.42 16 2 C 0.07 0.95 3.13 -27.88 -0.09 0.86 16 3 H 0.09 1.11 7.79 -51.93 -0.40 0.71 16 4 O -0.35 -5.11 9.51 -55.09 -0.52 -5.63 16 5 C 0.10 1.05 5.92 36.01 0.21 1.27 16 6 C -0.04 -0.45 5.55 -104.31 -0.58 -1.03 16 7 C -0.15 -1.50 9.82 -39.44 -0.39 -1.88 16 8 C 0.09 0.93 11.18 -17.55 -0.20 0.73 16 9 N -0.48 -5.67 10.36 -13.26 -0.14 -5.81 16 10 C 0.10 1.02 11.18 -17.55 -0.20 0.83 16 11 C -0.15 -1.63 9.82 -39.44 -0.39 -2.02 16 12 C 0.51 8.97 7.18 -10.99 -0.08 8.89 16 13 O -0.54 -11.57 16.51 -14.30 -0.24 -11.81 16 14 N -0.70 -11.76 5.21 -60.29 -0.31 -12.08 16 15 C 0.12 2.20 4.29 -4.04 -0.02 2.18 16 16 C 0.19 3.27 0.52 -130.16 -0.07 3.20 16 17 N -0.71 -15.14 4.70 -45.70 -0.21 -15.36 16 18 C -0.23 -5.74 8.59 -15.06 -0.13 -5.87 16 19 H 0.07 1.77 7.13 -52.48 -0.37 1.39 16 20 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 21 N -0.93 -25.76 13.07 55.49 0.73 -25.03 16 22 Si 0.90 21.53 29.55 -169.99 -5.02 16.50 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 C -0.13 -2.18 5.90 -24.74 -0.15 -2.33 16 27 C -0.11 -1.72 6.79 -25.07 -0.17 -1.89 16 28 C -0.12 -1.62 6.80 -25.61 -0.17 -1.80 16 29 C -0.12 -1.80 5.70 -25.61 -0.15 -1.94 16 30 H 0.08 0.73 7.92 -51.93 -0.41 0.32 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.57 7.87 -51.93 -0.41 0.16 16 33 H 0.07 0.68 8.05 -51.93 -0.42 0.26 16 34 H 0.06 0.55 7.83 -51.93 -0.41 0.15 16 35 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 36 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 38 H 0.14 1.36 8.06 -52.49 -0.42 0.93 16 39 H 0.40 6.47 7.85 -40.82 -0.32 6.15 16 40 H 0.05 0.94 8.08 -51.93 -0.42 0.53 16 41 H 0.06 1.34 7.52 -51.93 -0.39 0.95 16 42 H 0.38 8.84 7.50 -40.82 -0.31 8.53 16 43 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 44 H 0.07 1.40 7.20 -51.93 -0.37 1.03 16 45 H 0.05 0.81 8.06 -51.93 -0.42 0.39 16 46 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 48 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.06 0.84 7.80 -51.93 -0.40 0.43 16 51 H 0.06 0.95 7.76 -51.93 -0.40 0.55 16 LS Contribution 417.16 15.07 6.29 6.29 Total: -1.00 -31.84 417.16 -10.13 -41.97 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: -8.40 Total: 13.50 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -2.29 Total: -2.56 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: 0.06 Total: -58.27 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.76 Total: -17.44 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -31.84 -10.13 -41.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482230596.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.328 kcal (2) G-P(sol) polarization free energy of solvation -31.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds