Wall clock time and date at job start Wed Apr 1 2020 04:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46949 * 2 1 4 4 O 1.42906 * 109.47128 * 119.99676 * 2 1 3 5 5 C 1.42901 * 113.99785 * 270.00284 * 4 2 1 6 6 C 1.50700 * 109.46642 * 179.97438 * 5 4 2 7 7 C 1.38657 * 120.79170 * 269.71929 * 6 5 4 8 8 C 1.38200 * 119.16401 * 179.80062 * 7 6 5 9 9 N 1.31872 * 120.76231 * 0.48698 * 8 7 6 10 10 C 1.31870 * 121.73052 * 359.74290 * 9 8 7 11 11 C 1.38205 * 120.76114 * 0.02562 * 10 9 8 12 12 C 1.50699 * 109.47216 * 239.99753 * 2 1 3 13 13 O 1.21277 * 119.99965 * 244.99605 * 12 2 1 14 14 N 1.34774 * 119.99731 * 65.00420 * 12 2 1 15 15 C 1.46504 * 119.99844 * 179.97438 * 14 12 2 16 16 C 1.52998 * 109.47225 * 175.53634 * 15 14 12 17 17 N 1.46506 * 110.53641 * 57.61931 * 16 15 14 18 18 C 1.36933 * 120.00401 * 58.62243 * 17 16 15 19 19 H 1.08006 * 119.99300 * 6.53639 * 18 17 16 20 20 C 1.38803 * 120.00453 * 186.53837 * 18 17 16 21 21 N 1.31626 * 119.99874 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00359 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46959 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47222 * 119.99711 * 22 20 18 25 25 H 1.48500 * 109.47020 * 240.00051 * 22 20 18 26 26 C 1.54889 * 110.48686 * 180.22825 * 16 15 14 27 27 C 1.54895 * 102.74848 * 156.62225 * 26 16 15 28 28 C 1.54272 * 104.19256 * 322.05887 * 27 26 16 29 29 C 1.53871 * 106.60145 * 23.60982 * 28 27 26 30 30 H 1.09000 * 109.46832 * 60.00381 * 1 2 3 31 31 H 1.09004 * 109.46949 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47092 * 300.00233 * 1 2 3 33 33 H 1.08995 * 109.47277 * 299.99390 * 5 4 2 34 34 H 1.08999 * 109.46912 * 60.00308 * 5 4 2 35 35 H 1.07997 * 120.41395 * 0.02562 * 7 6 5 36 36 H 1.07997 * 119.62352 * 180.20556 * 8 7 6 37 37 H 1.07991 * 119.62111 * 180.02562 * 10 9 8 38 38 H 1.07997 * 120.42295 * 179.97438 * 11 10 9 39 39 H 0.97003 * 120.00165 * 359.97438 * 14 12 2 40 40 H 1.08997 * 109.46833 * 55.53835 * 15 14 12 41 41 H 1.09005 * 109.47165 * 295.53940 * 15 14 12 42 42 H 0.96999 * 119.99526 * 238.62385 * 17 16 15 43 43 H 0.96999 * 119.99774 * 179.97438 * 21 20 18 44 44 H 1.08995 * 110.75801 * 274.93614 * 26 16 15 45 45 H 1.09001 * 110.75426 * 38.30728 * 26 16 15 46 46 H 1.08994 * 110.48349 * 203.38368 * 27 26 16 47 47 H 1.08994 * 110.48252 * 80.73645 * 27 26 16 48 48 H 1.09001 * 110.03304 * 264.32241 * 28 27 26 49 49 H 1.09006 * 110.03030 * 142.89386 * 28 27 26 50 50 H 1.08998 * 110.03485 * 240.71240 * 29 28 27 51 51 H 1.08996 * 110.03357 * 119.27899 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 1.1669 5 6 2.2000 0.1831 2.2941 6 6 2.7002 -0.6283 3.4614 7 6 1.8128 -1.2037 4.3580 8 6 2.3082 -1.9446 5.4143 9 7 3.6074 -2.0986 5.5794 10 6 4.4805 -1.5621 4.7494 11 6 4.0590 -0.8121 3.6678 12 6 2.0324 -0.7105 -1.2304 13 8 2.6531 -1.7466 -1.1214 14 7 1.7920 -0.1942 -2.4519 15 6 2.2808 -0.8845 -3.6481 16 6 1.7819 -0.1557 -4.8973 17 7 2.2204 1.2422 -4.8863 18 6 3.5557 1.5406 -4.8316 19 1 4.2888 0.7506 -4.9030 20 6 3.9671 2.8580 -4.6843 21 7 3.0736 3.8207 -4.5977 22 14 5.7887 3.2651 -4.6103 23 1 6.5806 2.0145 -4.7297 24 1 6.1371 4.1805 -5.7265 25 1 6.0966 3.9236 -3.3154 26 6 2.2812 -0.8703 -6.1776 27 6 1.2485 -0.4246 -7.2426 28 6 -0.0947 -0.4095 -6.4840 29 6 0.2444 -0.2385 -4.9929 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 2.9319 0.9514 2.0451 34 1 1.2537 0.6547 2.5588 35 1 0.7479 -1.0776 4.2305 36 1 1.6236 -2.3988 6.1152 37 1 5.5370 -1.7104 4.9168 38 1 4.7787 -0.3749 2.9917 39 1 1.2953 0.6345 -2.5391 40 1 1.9100 -1.9095 -3.6530 41 1 3.3709 -0.8926 -3.6430 42 1 1.5648 1.9564 -4.9177 43 1 3.3612 4.7413 -4.4943 44 1 3.2820 -0.5307 -6.4442 45 1 2.2608 -1.9525 -6.0488 46 1 1.2147 -1.1402 -8.0640 47 1 1.4886 0.5719 -7.6131 48 1 -0.6229 -1.3499 -6.6413 49 1 -0.7071 0.4250 -6.8257 50 1 -0.1192 -1.0959 -4.4265 51 1 -0.2033 0.6789 -4.6110 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482230596.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:02 Heat of formation + Delta-G solvation = -63.983569 kcal Electronic energy + Delta-G solvation = -30776.285128 eV Core-core repulsion = 26674.663812 eV Total energy + Delta-G solvation = -4101.621316 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.26918 -40.95147 -39.75885 -38.57333 -35.55850 -35.12645 -34.44962 -32.65151 -32.17377 -31.88217 -29.53762 -29.42748 -27.90129 -26.38176 -25.36710 -24.44957 -24.27289 -22.98593 -21.65491 -20.94832 -20.18565 -18.96346 -18.56907 -18.16426 -17.52611 -17.43013 -17.12744 -16.60260 -16.43705 -16.21586 -16.10038 -15.83231 -15.46220 -15.26406 -15.15497 -14.80619 -14.57576 -14.46752 -14.11727 -14.02607 -13.73886 -13.46150 -13.28133 -13.11846 -12.97908 -12.92809 -12.51854 -12.43014 -12.30818 -12.27696 -12.22656 -11.92751 -11.72457 -11.58633 -11.39709 -11.16171 -11.11042 -10.89295 -10.77727 -10.50127 -10.46802 -10.11395 -9.93524 -8.93837 -7.90453 -5.15491 0.10798 0.17294 1.42795 1.47377 1.53028 1.63211 1.96979 2.56335 2.72390 3.08381 3.40973 3.55453 3.64041 3.73606 3.77422 3.79683 3.84992 3.94123 3.98842 4.07756 4.09697 4.14387 4.17532 4.37080 4.39926 4.46330 4.61741 4.66872 4.68654 4.71148 4.77626 4.82508 4.86078 4.88960 4.96240 4.99748 5.07067 5.14821 5.18803 5.22855 5.24218 5.32867 5.41681 5.49239 5.56580 5.63680 5.70113 5.72683 5.98326 6.33684 6.65982 6.96925 7.29338 7.41741 8.14339 8.40264 9.31762 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011141 B = 0.002657 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2512.525992 B =10537.210587 C =12044.344992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.073 3.927 3 H 0.101 0.899 4 O -0.377 6.377 5 C 0.093 3.907 6 C -0.059 4.059 7 C -0.151 4.151 8 C 0.086 3.914 9 N -0.508 5.508 10 C 0.085 3.915 11 C -0.164 4.164 12 C 0.504 3.496 13 O -0.583 6.583 14 N -0.691 5.691 15 C 0.129 3.871 16 C 0.184 3.816 17 N -0.709 5.709 18 C -0.212 4.212 19 H 0.061 0.939 20 C -0.060 4.060 21 N -0.957 5.957 22 Si 0.945 3.055 23 H -0.279 1.279 24 H -0.297 1.297 25 H -0.298 1.298 26 C -0.132 4.132 27 C -0.110 4.110 28 C -0.113 4.113 29 C -0.116 4.116 30 H 0.085 0.915 31 H 0.062 0.938 32 H 0.094 0.906 33 H 0.067 0.933 34 H 0.094 0.906 35 H 0.161 0.839 36 H 0.184 0.816 37 H 0.175 0.825 38 H 0.140 0.860 39 H 0.409 0.591 40 H 0.066 0.934 41 H 0.029 0.971 42 H 0.378 0.622 43 H 0.248 0.752 44 H 0.045 0.955 45 H 0.074 0.926 46 H 0.073 0.927 47 H 0.043 0.957 48 H 0.080 0.920 49 H 0.062 0.938 50 H 0.080 0.920 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.017 -7.363 11.923 17.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.013 3.987 3 H 0.118 0.882 4 O -0.296 6.296 5 C 0.018 3.982 6 C -0.067 4.067 7 C -0.171 4.171 8 C -0.070 4.070 9 N -0.218 5.218 10 C -0.071 4.071 11 C -0.184 4.184 12 C 0.290 3.710 13 O -0.463 6.463 14 N -0.342 5.342 15 C 0.002 3.998 16 C 0.093 3.907 17 N -0.349 5.349 18 C -0.344 4.344 19 H 0.079 0.921 20 C -0.253 4.253 21 N -0.608 5.608 22 Si 0.777 3.223 23 H -0.204 1.204 24 H -0.224 1.224 25 H -0.225 1.225 26 C -0.172 4.172 27 C -0.148 4.148 28 C -0.151 4.151 29 C -0.154 4.154 30 H 0.104 0.896 31 H 0.081 0.919 32 H 0.112 0.888 33 H 0.086 0.914 34 H 0.112 0.888 35 H 0.179 0.821 36 H 0.201 0.799 37 H 0.192 0.808 38 H 0.158 0.842 39 H 0.245 0.755 40 H 0.084 0.916 41 H 0.048 0.952 42 H 0.211 0.789 43 H 0.057 0.943 44 H 0.064 0.936 45 H 0.092 0.908 46 H 0.092 0.908 47 H 0.062 0.938 48 H 0.098 0.902 49 H 0.081 0.919 50 H 0.099 0.901 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.060 -8.791 12.708 17.912 hybrid contribution 1.009 1.930 -0.957 2.379 sum -8.051 -6.861 11.751 15.810 Atomic orbital electron populations 1.22194 0.90818 1.03709 1.05033 1.21983 0.96972 0.96161 0.83625 0.88155 1.88062 1.87093 1.35034 1.19381 1.21606 1.01748 0.91348 0.83530 1.20234 0.94031 0.97172 0.95248 1.22369 1.02101 0.97478 0.95147 1.23271 0.91893 0.95214 0.96628 1.67699 1.04362 1.20450 1.29277 1.23095 1.00659 0.92977 0.90346 1.22326 0.96482 1.00197 0.99413 1.20955 0.79339 0.85167 0.85509 1.90651 1.42450 1.25962 1.87281 1.45653 1.56342 1.27522 1.04719 1.21686 0.97632 0.95228 0.85221 1.20857 0.93762 0.84780 0.91282 1.42437 1.03742 1.01142 1.87560 1.19237 0.85077 0.91402 1.38689 0.92122 1.25153 0.99524 0.96262 1.04400 1.69749 1.32527 0.99183 1.59370 0.85488 0.82848 0.77449 0.76490 1.20399 1.22448 1.22522 1.22865 0.98838 0.99304 0.96155 1.22158 0.94804 1.00345 0.97469 1.22051 0.96860 1.02133 0.94037 1.22333 0.93192 1.02223 0.97649 0.89578 0.91906 0.88765 0.91439 0.88847 0.82120 0.79917 0.80803 0.84209 0.75452 0.91607 0.95220 0.78878 0.94302 0.93650 0.90751 0.90789 0.93800 0.90168 0.91950 0.90113 0.91580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 9.48 71.98 0.68 -2.26 16 2 C 0.07 1.91 3.13 29.85 0.09 2.01 16 3 H 0.10 2.35 7.79 -2.38 -0.02 2.33 16 4 O -0.38 -10.64 9.51 -129.99 -1.24 -11.88 16 5 C 0.09 1.91 5.92 71.24 0.42 2.33 16 6 C -0.06 -1.25 5.55 -19.66 -0.11 -1.36 16 7 C -0.15 -2.70 9.82 22.36 0.22 -2.48 16 8 C 0.09 1.59 11.18 84.68 0.95 2.53 16 9 N -0.51 -11.53 10.36 -195.85 -2.03 -13.56 16 10 C 0.09 1.81 11.18 84.68 0.95 2.76 16 11 C -0.16 -3.61 9.82 22.36 0.22 -3.39 16 12 C 0.50 17.56 7.18 87.66 0.63 18.19 16 13 O -0.58 -25.56 16.51 15.97 0.26 -25.30 16 14 N -0.69 -22.94 5.21 -463.06 -2.41 -25.35 16 15 C 0.13 4.58 4.29 86.38 0.37 4.95 16 16 C 0.18 6.23 0.52 4.68 0.00 6.24 16 17 N -0.71 -30.28 4.70 -298.49 -1.40 -31.68 16 18 C -0.21 -10.65 8.59 84.03 0.72 -9.92 16 19 H 0.06 3.14 7.13 -2.91 -0.02 3.12 16 20 C -0.06 -3.23 5.50 84.86 0.47 -2.76 16 21 N -0.96 -53.47 13.07 21.65 0.28 -53.18 16 22 Si 0.95 44.94 29.55 68.60 2.03 46.97 16 23 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 24 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 25 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 26 C -0.13 -4.26 5.90 31.89 0.19 -4.07 16 27 C -0.11 -3.13 6.79 31.67 0.22 -2.92 16 28 C -0.11 -2.74 6.80 31.32 0.21 -2.53 16 29 C -0.12 -3.09 5.70 31.32 0.18 -2.91 16 30 H 0.09 1.41 7.92 -2.39 -0.02 1.39 16 31 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.09 1.23 7.87 -2.39 -0.02 1.22 16 33 H 0.07 1.32 8.05 -2.39 -0.02 1.30 16 34 H 0.09 1.32 7.83 -2.39 -0.02 1.30 16 35 H 0.16 1.93 8.06 -2.91 -0.02 1.90 16 36 H 0.18 2.13 8.06 -2.91 -0.02 2.11 16 37 H 0.17 2.79 8.06 -2.92 -0.02 2.76 16 38 H 0.14 2.85 8.06 -2.91 -0.02 2.82 16 39 H 0.41 12.69 7.85 -92.71 -0.73 11.96 16 40 H 0.07 2.21 8.08 -2.39 -0.02 2.19 16 41 H 0.03 1.26 7.52 -2.38 -0.02 1.24 16 42 H 0.38 17.30 7.50 -92.71 -0.69 16.60 16 43 H 0.25 13.70 8.31 -92.71 -0.77 12.93 16 44 H 0.04 1.72 7.20 -2.39 -0.02 1.70 16 45 H 0.07 2.10 8.06 -2.39 -0.02 2.08 16 46 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 47 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 48 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 49 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 50 H 0.08 1.89 7.80 -2.39 -0.02 1.87 16 51 H 0.07 1.77 7.76 -2.39 -0.02 1.75 16 Total: -1.00 -70.33 417.16 1.41 -68.91 By element: Atomic # 1 Polarization: 41.16 SS G_CDS: -0.49 Total: 40.67 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: 6.41 Total: 4.40 kcal Atomic # 7 Polarization: -118.21 SS G_CDS: -5.56 Total: -123.77 kcal Atomic # 8 Polarization: -36.21 SS G_CDS: -0.97 Total: -37.18 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -70.33 1.41 -68.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482230596.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.931 kcal (2) G-P(sol) polarization free energy of solvation -70.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds