Wall clock time and date at job start Wed Apr 1 2020 06:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47035 * 97.28816 * 3 2 1 5 5 C 1.34767 * 120.00275 * 85.00747 * 4 3 2 6 6 O 1.21285 * 119.99664 * 354.67162 * 5 4 3 7 7 C 1.50695 * 120.00468 * 174.94860 * 5 4 3 8 8 H 1.08999 * 110.85710 * 324.78724 * 7 5 4 9 9 C 1.54625 * 110.97292 * 88.58011 * 7 5 4 10 10 C 1.51273 * 104.20008 * 142.91893 * 9 7 5 11 11 O 1.21286 * 124.94735 * 163.78726 * 10 9 7 12 12 N 1.34418 * 110.11637 * 343.74507 * 10 9 7 13 13 C 1.46505 * 124.35152 * 179.56905 * 12 10 9 14 14 C 1.52998 * 109.46738 * 89.97954 * 13 12 10 15 15 C 1.46764 * 111.30083 * 359.59742 * 12 10 9 16 16 C 1.46505 * 120.00017 * 265.00766 * 4 3 2 17 17 C 1.53041 * 109.45775 * 60.02715 * 16 4 3 18 18 C 1.53199 * 109.31113 * 178.60245 * 17 16 4 19 19 N 1.46928 * 108.76270 * 54.65547 * 18 17 16 20 20 C 1.36934 * 120.63035 * 126.40838 * 19 18 17 21 21 H 1.07998 * 120.00365 * 327.95523 * 20 19 18 22 22 C 1.38815 * 120.00089 * 147.95725 * 20 19 18 23 23 N 1.31615 * 120.00165 * 162.86861 * 22 20 19 24 24 Si 1.86804 * 120.00043 * 342.86439 * 22 20 19 25 25 H 1.48498 * 109.47067 * 93.39433 * 24 22 20 26 26 H 1.48495 * 109.47307 * 213.39893 * 24 22 20 27 27 H 1.48505 * 109.46812 * 333.39360 * 24 22 20 28 28 C 1.46933 * 118.74016 * 306.38223 * 19 18 17 29 29 C 1.53045 * 109.45684 * 299.97604 * 16 4 3 30 30 H 4.40642 * 5.51396 * 180.02562 * 4 1 2 31 31 H 1.09007 * 109.47161 * 337.28980 * 3 2 1 32 32 H 1.08994 * 109.46770 * 217.28819 * 3 2 1 33 33 H 1.09003 * 110.49042 * 261.60160 * 9 7 5 34 34 H 1.09002 * 110.48838 * 24.23805 * 9 7 5 35 35 H 1.09005 * 109.46647 * 209.98040 * 13 12 10 36 36 H 1.08993 * 109.47223 * 329.97820 * 13 12 10 37 37 H 1.08996 * 109.47387 * 299.99601 * 14 13 12 38 38 H 1.09004 * 109.47117 * 60.00315 * 14 13 12 39 39 H 1.09000 * 109.46630 * 179.97438 * 14 13 12 40 40 H 1.08996 * 110.24562 * 258.01720 * 15 12 10 41 41 H 1.08994 * 110.24889 * 136.01354 * 15 12 10 42 42 H 1.08999 * 109.46149 * 179.97438 * 16 4 3 43 43 H 1.08999 * 109.49749 * 298.56453 * 17 16 4 44 44 H 1.08998 * 109.49881 * 58.66411 * 17 16 4 45 45 H 1.08994 * 109.59710 * 294.87234 * 18 17 16 46 46 H 1.08991 * 109.58745 * 174.43192 * 18 17 16 47 47 H 0.97003 * 120.00377 * 180.02562 * 23 22 20 48 48 H 1.08997 * 109.58421 * 293.82510 * 28 19 18 49 49 H 1.08997 * 109.58317 * 173.40086 * 28 19 18 50 50 H 1.09002 * 109.49256 * 301.33358 * 29 16 4 51 51 H 1.08997 * 109.50195 * 61.43481 * 29 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.1761 -1.3701 5 6 3.2626 1.4143 -1.8864 6 8 2.8837 2.3773 -1.2538 7 6 3.8710 1.6019 -3.2522 8 1 4.6627 0.8736 -3.4278 9 6 2.7905 1.5215 -4.3553 10 6 3.2217 2.5541 -5.3732 11 8 2.8122 2.6193 -6.5130 12 7 4.1241 3.3895 -4.8305 13 6 4.7556 4.5017 -5.5451 14 6 3.9099 5.7649 -5.3717 15 6 4.3961 3.0439 -3.4303 16 6 3.4831 -0.9945 -2.1790 17 6 2.2521 -1.8899 -2.3373 18 6 2.6112 -3.0949 -3.2125 19 7 3.7782 -3.7712 -2.6297 20 6 3.7409 -5.1115 -2.3515 21 1 2.8118 -5.5762 -2.0565 22 6 4.8975 -5.8730 -2.4489 23 7 4.9574 -7.0552 -1.8735 24 14 6.3688 -5.2198 -3.3965 25 1 7.2894 -4.5230 -2.4626 26 1 7.0823 -6.3500 -4.0436 27 1 5.9043 -4.2672 -4.4367 28 6 4.9860 -2.9822 -2.3514 29 6 4.6001 -1.7784 -1.4862 30 1 -1.0500 0.0002 0.0001 31 1 3.0098 -0.9472 0.3968 32 1 3.0089 0.8184 0.6226 33 1 2.7754 0.5277 -4.8028 34 1 1.8108 1.7725 -3.9487 35 1 5.7531 4.6737 -5.1405 36 1 4.8304 4.2571 -6.6046 37 1 2.9125 5.5927 -5.7762 38 1 3.8351 6.0095 -4.3121 39 1 4.3800 6.5924 -5.9030 40 1 3.8649 3.7236 -2.7640 41 1 5.4674 3.0822 -3.2335 42 1 3.8233 -0.6685 -3.1618 43 1 1.9258 -2.2366 -1.3567 44 1 1.4489 -1.3241 -2.8094 45 1 2.8509 -2.7562 -4.2203 46 1 1.7686 -3.7853 -3.2474 47 1 5.7657 -7.5872 -1.9412 48 1 5.4192 -2.6344 -3.2892 49 1 5.7101 -3.5984 -1.8184 50 1 5.4684 -1.1332 -1.3525 51 1 4.2515 -2.1262 -0.5138 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483985112.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:14:53 Heat of formation + Delta-G solvation = 0.284684 kcal Electronic energy + Delta-G solvation = -32115.763505 eV Core-core repulsion = 28016.929070 eV Total energy + Delta-G solvation = -4098.834435 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.15009 -40.82190 -39.31910 -37.53431 -36.86506 -35.10743 -34.46568 -33.67713 -31.91445 -31.79210 -30.92295 -28.99657 -28.29215 -26.83883 -24.80943 -24.37385 -23.86212 -23.33116 -21.19194 -20.71913 -20.16826 -19.18841 -18.83024 -18.58232 -17.81120 -17.27927 -17.01250 -16.80001 -16.34223 -16.27426 -15.86967 -15.28283 -15.23428 -15.01065 -14.90877 -14.77825 -14.62578 -14.58207 -14.44763 -14.16288 -14.13960 -13.81437 -13.68186 -13.38555 -13.27042 -12.94428 -12.68923 -12.56672 -12.53556 -12.30420 -12.17618 -12.00811 -11.97428 -11.75259 -11.57127 -11.46568 -11.43644 -11.11985 -11.03299 -10.73658 -10.66486 -9.87912 -9.79351 -8.83109 -8.12157 -5.50014 1.31127 1.35214 1.41641 1.47491 1.48328 1.56498 1.94024 1.97492 2.34473 2.46523 3.05208 3.13454 3.31652 3.37524 3.47463 3.55391 3.69620 3.81163 3.97378 4.01344 4.11004 4.20094 4.24069 4.34848 4.37822 4.45847 4.49094 4.51430 4.55341 4.57890 4.65615 4.71099 4.79669 4.81734 4.86483 4.88795 4.92922 5.00543 5.03802 5.10674 5.12312 5.24850 5.26518 5.33784 5.51513 5.54558 5.94680 6.00165 6.18379 6.28156 6.70229 6.98453 6.99743 7.04520 7.66549 8.06576 9.07993 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011145 B = 0.003457 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.784613 B = 8096.855579 C = 9554.057903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.226 4.226 3 C 0.222 3.778 4 N -0.591 5.591 5 C 0.535 3.465 6 O -0.560 6.560 7 C -0.121 4.121 8 H 0.140 0.860 9 C -0.137 4.137 10 C 0.515 3.485 11 O -0.574 6.574 12 N -0.614 5.614 13 C 0.115 3.885 14 C -0.166 4.166 15 C 0.119 3.881 16 C 0.147 3.853 17 C -0.128 4.128 18 C 0.146 3.854 19 N -0.619 5.619 20 C -0.247 4.247 21 H 0.044 0.956 22 C -0.035 4.035 23 N -0.963 5.963 24 Si 0.950 3.050 25 H -0.269 1.269 26 H -0.318 1.318 27 H -0.250 1.250 28 C 0.121 3.879 29 C -0.135 4.135 30 H 0.240 0.760 31 H 0.111 0.889 32 H 0.106 0.894 33 H 0.122 0.878 34 H 0.104 0.896 35 H 0.111 0.889 36 H 0.072 0.928 37 H 0.034 0.966 38 H 0.061 0.939 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.053 0.947 44 H 0.075 0.925 45 H 0.044 0.956 46 H 0.051 0.949 47 H 0.260 0.740 48 H 0.045 0.955 49 H 0.051 0.949 50 H 0.093 0.907 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.587 24.453 -1.046 24.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.227 4.227 3 C 0.100 3.900 4 N -0.321 5.321 5 C 0.323 3.677 6 O -0.438 6.438 7 C -0.142 4.142 8 H 0.158 0.842 9 C -0.177 4.177 10 C 0.303 3.697 11 O -0.455 6.455 12 N -0.347 5.347 13 C -0.005 4.005 14 C -0.224 4.224 15 C -0.004 4.004 16 C 0.044 3.956 17 C -0.168 4.168 18 C 0.021 3.979 19 N -0.344 5.344 20 C -0.377 4.377 21 H 0.061 0.939 22 C -0.230 4.230 23 N -0.609 5.609 24 Si 0.778 3.222 25 H -0.196 1.196 26 H -0.248 1.248 27 H -0.174 1.174 28 C -0.004 4.004 29 C -0.175 4.175 30 H 0.256 0.744 31 H 0.129 0.871 32 H 0.124 0.876 33 H 0.141 0.859 34 H 0.122 0.878 35 H 0.129 0.871 36 H 0.090 0.910 37 H 0.053 0.947 38 H 0.081 0.919 39 H 0.106 0.894 40 H 0.101 0.899 41 H 0.133 0.867 42 H 0.131 0.869 43 H 0.072 0.928 44 H 0.093 0.907 45 H 0.062 0.938 46 H 0.070 0.930 47 H 0.069 0.931 48 H 0.063 0.937 49 H 0.069 0.931 50 H 0.111 0.889 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.330 24.962 -1.309 24.999 hybrid contribution 0.104 -0.768 -0.129 0.786 sum 0.434 24.194 -1.438 24.240 Atomic orbital electron populations 1.25639 0.96852 1.00716 0.97817 1.23871 0.95658 1.00821 1.02358 1.18343 0.83584 1.04318 0.83764 1.48109 1.63804 1.05993 1.14184 1.20336 0.77751 0.82116 0.87469 1.90705 1.50416 1.40223 1.62491 1.22311 0.99847 1.00644 0.91407 0.84209 1.22286 0.99838 1.01196 0.94408 1.21051 0.78429 0.82941 0.87254 1.90710 1.59221 1.75107 1.20417 1.48479 1.42358 1.30605 1.13220 1.21576 0.97330 0.84521 0.97103 1.22125 0.99790 0.97854 1.02615 1.22109 1.03466 0.93497 0.81302 1.21281 0.94858 0.84330 0.95119 1.22209 0.97234 0.96450 1.00867 1.21054 0.89267 0.92905 0.94661 1.44458 1.12662 1.04588 1.72687 1.18774 0.95995 0.84371 1.38575 0.93869 1.26077 1.01507 0.95515 0.99898 1.69956 1.29443 1.14577 1.46893 0.85846 0.79562 0.76684 0.80124 1.19558 1.24776 1.17409 1.21421 0.89195 0.92434 0.97332 1.22324 0.98821 0.96783 0.99576 0.74379 0.87142 0.87645 0.85941 0.87814 0.87070 0.90950 0.94713 0.91943 0.89441 0.89859 0.86712 0.86879 0.92829 0.90661 0.93778 0.92995 0.93067 0.93746 0.93098 0.88859 0.91988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.26 19.25 74.32 1.43 -2.83 16 2 C -0.23 -5.51 12.51 31.13 0.39 -5.12 16 3 C 0.22 4.78 5.10 84.57 0.43 5.22 16 4 N -0.59 -12.04 2.36 -808.14 -1.91 -13.94 16 5 C 0.53 10.79 6.74 87.66 0.59 11.38 16 6 O -0.56 -14.64 15.33 -3.05 -0.05 -14.68 16 7 C -0.12 -1.82 2.48 -10.48 -0.03 -1.85 16 8 H 0.14 1.55 6.67 -2.39 -0.02 1.53 16 9 C -0.14 -2.47 6.22 30.58 0.19 -2.28 16 10 C 0.51 11.81 8.02 87.90 0.71 12.51 16 11 O -0.57 -18.07 17.60 -3.05 -0.05 -18.12 16 12 N -0.61 -10.51 2.93 -817.99 -2.40 -12.91 16 13 C 0.12 1.55 6.65 86.38 0.57 2.13 16 14 C -0.17 -2.18 10.24 71.98 0.74 -1.44 16 15 C 0.12 1.62 6.84 86.83 0.59 2.22 16 16 C 0.15 3.17 2.30 45.02 0.10 3.28 16 17 C -0.13 -3.35 4.86 30.67 0.15 -3.20 16 18 C 0.15 4.89 6.52 86.36 0.56 5.45 16 19 N -0.62 -25.81 2.71 -699.09 -1.89 -27.71 16 20 C -0.25 -13.24 10.01 84.03 0.84 -12.40 16 21 H 0.04 2.60 8.06 -2.91 -0.02 2.58 16 22 C -0.04 -1.98 5.26 84.86 0.45 -1.53 16 23 N -0.96 -58.98 13.97 21.65 0.30 -58.68 16 24 Si 0.95 43.40 24.37 68.60 1.67 45.07 16 25 H -0.27 -11.38 6.73 99.48 0.67 -10.71 16 26 H -0.32 -15.28 7.11 99.48 0.71 -14.57 16 27 H -0.25 -10.55 6.50 99.48 0.65 -9.90 16 28 C 0.12 4.25 4.19 86.36 0.36 4.61 16 29 C -0.14 -3.42 5.32 30.67 0.16 -3.25 16 30 H 0.24 3.59 7.80 -4.42 -0.03 3.55 16 31 H 0.11 2.31 6.47 -2.38 -0.02 2.29 16 32 H 0.11 2.16 7.66 -2.39 -0.02 2.14 16 33 H 0.12 1.99 7.86 -2.39 -0.02 1.97 16 34 H 0.10 2.01 7.89 -2.39 -0.02 1.99 16 35 H 0.11 0.82 8.14 -2.38 -0.02 0.80 16 36 H 0.07 1.16 7.93 -2.39 -0.02 1.14 16 37 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 39 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.08 1.38 6.87 -2.39 -0.02 1.36 16 41 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.11 2.02 5.11 -2.39 -0.01 2.00 16 43 H 0.05 1.60 7.27 -2.39 -0.02 1.59 16 44 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.05 1.87 7.93 -2.39 -0.02 1.85 16 47 H 0.26 15.21 8.31 -92.71 -0.77 14.43 16 48 H 0.04 1.43 6.90 -2.39 -0.02 1.41 16 49 H 0.05 2.05 4.90 -2.39 -0.01 2.04 16 50 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 51 H 0.06 1.72 6.72 -2.39 -0.02 1.71 16 Total: -1.00 -75.69 401.59 4.74 -70.94 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: 0.82 Total: 17.14 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: 8.25 Total: 12.89 kcal Atomic # 7 Polarization: -107.34 SS G_CDS: -5.90 Total: -113.24 kcal Atomic # 8 Polarization: -32.70 SS G_CDS: -0.10 Total: -32.80 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 1.67 Total: 45.07 kcal Total: -75.69 4.74 -70.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483985112.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.227 kcal (2) G-P(sol) polarization free energy of solvation -75.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds