Wall clock time and date at job start Wed Apr 1 2020 06:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47289 * 336.95835 * 3 2 1 5 5 C 1.34772 * 120.00114 * 275.50086 * 4 3 2 6 6 O 1.21284 * 119.99967 * 5.65584 * 5 4 3 7 7 C 1.50699 * 120.00243 * 185.65695 * 5 4 3 8 8 H 1.09005 * 110.85592 * 46.53466 * 7 5 4 9 9 C 1.54623 * 110.96890 * 282.74668 * 7 5 4 10 10 C 1.51341 * 104.16941 * 217.10548 * 9 7 5 11 11 O 1.21282 * 124.93376 * 196.22000 * 10 9 7 12 12 N 1.34418 * 110.12989 * 16.20747 * 10 9 7 13 13 C 1.46501 * 124.35384 * 180.46060 * 12 10 9 14 14 C 1.53001 * 109.46708 * 269.97393 * 13 12 10 15 15 C 1.46770 * 111.30062 * 0.43313 * 12 10 9 16 16 C 1.46499 * 119.99957 * 95.50310 * 4 3 2 17 17 C 1.53032 * 109.46017 * 60.02558 * 16 4 3 18 18 C 1.53197 * 109.31233 * 178.59987 * 17 16 4 19 19 N 1.46934 * 108.76256 * 54.65740 * 18 17 16 20 20 C 1.36939 * 120.62786 * 126.40675 * 19 18 17 21 21 H 1.07999 * 120.00388 * 332.14256 * 20 19 18 22 22 C 1.38810 * 119.99550 * 152.14596 * 20 19 18 23 23 N 1.31615 * 119.99891 * 166.32002 * 22 20 19 24 24 Si 1.86805 * 120.00224 * 346.31373 * 22 20 19 25 25 H 1.48507 * 109.46612 * 95.12110 * 24 22 20 26 26 H 1.48495 * 109.47091 * 215.11931 * 24 22 20 27 27 H 1.48501 * 109.47118 * 335.12227 * 24 22 20 28 28 C 1.46927 * 118.73747 * 306.38048 * 19 18 17 29 29 C 1.53042 * 109.45957 * 299.97066 * 16 4 3 30 30 H 4.40642 * 5.51312 * 179.97438 * 4 1 2 31 31 H 1.08996 * 109.46959 * 96.96206 * 3 2 1 32 32 H 1.09004 * 109.46902 * 216.95868 * 3 2 1 33 33 H 1.09000 * 110.48718 * 335.76274 * 9 7 5 34 34 H 1.09008 * 110.48732 * 98.40497 * 9 7 5 35 35 H 1.09000 * 109.47081 * 29.96932 * 13 12 10 36 36 H 1.08999 * 109.47514 * 149.97070 * 13 12 10 37 37 H 1.09005 * 109.46764 * 179.97438 * 14 13 12 38 38 H 1.09000 * 109.46973 * 299.99605 * 14 13 12 39 39 H 1.08997 * 109.47667 * 60.00070 * 14 13 12 40 40 H 1.09000 * 110.24451 * 223.99068 * 15 12 10 41 41 H 1.08994 * 110.24133 * 101.98541 * 15 12 10 42 42 H 1.08998 * 109.45776 * 180.02562 * 16 4 3 43 43 H 1.08999 * 109.50112 * 298.56320 * 17 16 4 44 44 H 1.09002 * 109.50028 * 58.66987 * 17 16 4 45 45 H 1.09000 * 109.60217 * 294.87229 * 18 17 16 46 46 H 1.09007 * 109.70290 * 174.50287 * 18 17 16 47 47 H 0.97005 * 120.00300 * 179.97438 * 23 22 20 48 48 H 1.08996 * 109.58959 * 293.82630 * 28 19 18 49 49 H 1.09003 * 109.70084 * 173.46384 * 28 19 18 50 50 H 1.09007 * 109.49821 * 301.34033 * 29 16 4 51 51 H 1.08999 * 109.49742 * 61.43715 * 29 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.2701 0.5406 5 6 3.2542 -1.4343 1.8730 6 8 2.8613 -0.5703 2.6280 7 6 3.8757 -2.6915 2.4246 8 1 4.7970 -2.9337 1.8948 9 6 2.8787 -3.8720 2.3692 10 6 3.1526 -4.6482 3.6392 11 8 2.7885 -5.7857 3.8502 12 7 3.8581 -3.8937 4.4994 13 6 4.3007 -4.3425 5.8219 14 6 3.2272 -4.0080 6.8595 15 6 4.1287 -2.5627 3.9432 16 6 3.4943 -2.3624 -0.3671 17 6 4.6165 -1.9017 -1.3001 18 6 5.0136 -3.0573 -2.2241 19 7 3.8125 -3.5414 -2.9184 20 6 3.7858 -3.6336 -4.2844 21 1 4.4004 -2.9769 -4.8821 22 6 2.9686 -4.5712 -4.9008 23 7 2.7322 -4.4899 -6.1930 24 14 2.2045 -5.9485 -3.8964 25 1 0.8345 -5.5554 -3.4791 26 1 2.1362 -7.1824 -4.7197 27 1 3.0351 -6.2023 -2.6919 28 6 2.6409 -3.9252 -2.1191 29 6 2.2708 -2.7600 -1.1960 30 1 -1.0498 -0.0002 0.0003 31 1 3.0092 0.1254 -1.0201 32 1 3.0090 0.8220 0.6179 33 1 1.8525 -3.5047 2.3605 34 1 3.0703 -4.4924 1.4935 35 1 4.4653 -5.4198 5.8037 36 1 5.2302 -3.8374 6.0848 37 1 3.5564 -4.3423 7.8434 38 1 3.0627 -2.9306 6.8777 39 1 2.2978 -4.5131 6.5967 40 1 5.1644 -2.2792 4.1303 41 1 3.4512 -1.8277 4.3775 42 1 3.8335 -3.2203 0.2135 43 1 4.2692 -1.0597 -1.8988 44 1 5.4795 -1.5966 -0.7082 45 1 5.4452 -3.8657 -1.6340 46 1 5.7429 -2.7090 -2.9555 47 1 2.1614 -5.1452 -6.6239 48 1 2.8792 -4.8042 -1.5203 49 1 1.8029 -4.1488 -2.7793 50 1 1.4638 -3.0657 -0.5299 51 1 1.9458 -1.9098 -1.7957 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483985113.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:14:58 Heat of formation + Delta-G solvation = 25.915143 kcal Electronic energy + Delta-G solvation = -32289.406492 eV Core-core repulsion = 28191.683477 eV Total energy + Delta-G solvation = -4097.723015 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.28171 -39.84341 -38.09389 -36.56974 -35.65268 -34.36454 -33.18205 -32.16502 -30.64442 -30.26990 -30.19095 -28.09849 -27.41806 -25.22929 -24.03703 -23.17516 -22.79172 -22.06657 -19.96024 -19.86202 -19.23028 -18.07003 -17.90231 -17.16569 -16.76285 -16.23452 -16.03246 -15.59197 -15.36035 -15.12072 -14.38359 -14.37207 -14.07340 -13.98882 -13.90725 -13.85198 -13.72750 -13.38935 -13.32822 -13.11928 -12.82914 -12.56875 -12.41098 -12.29177 -12.11563 -11.95105 -11.82778 -11.61090 -11.38577 -11.14890 -11.07365 -10.72800 -10.62131 -10.40239 -10.22347 -10.13161 -10.00659 -9.92640 -9.69717 -9.49477 -9.00521 -8.86990 -8.73160 -7.07711 -5.98687 -3.40731 2.25216 2.34202 2.38829 2.71920 2.90303 3.27092 3.29873 3.41767 3.45746 3.89974 4.05192 4.27285 4.42195 4.45651 4.55717 4.65033 4.75777 4.82933 4.85619 4.87312 5.04254 5.09780 5.14841 5.23684 5.26200 5.30589 5.36054 5.37679 5.43722 5.46035 5.55433 5.59972 5.64612 5.85160 5.86644 5.90287 5.95073 6.02107 6.08472 6.21213 6.25030 6.37797 6.43639 6.46424 6.53371 6.77322 6.80866 7.22455 7.64855 7.88061 7.90569 7.93824 8.26449 8.84925 9.64332 9.99037 11.17078 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011247 B = 0.003604 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.915858 B = 7768.120558 C = 9047.936053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.196 4.196 3 C 0.225 3.775 4 N -0.597 5.597 5 C 0.530 3.470 6 O -0.535 6.535 7 C -0.125 4.125 8 H 0.119 0.881 9 C -0.145 4.145 10 C 0.523 3.477 11 O -0.527 6.527 12 N -0.620 5.620 13 C 0.123 3.877 14 C -0.171 4.171 15 C 0.118 3.882 16 C 0.137 3.863 17 C -0.146 4.146 18 C 0.152 3.848 19 N -0.606 5.606 20 C -0.262 4.262 21 H 0.088 0.912 22 C 0.022 3.978 23 N -0.913 5.913 24 Si 0.888 3.112 25 H -0.290 1.290 26 H -0.305 1.305 27 H -0.264 1.264 28 C 0.125 3.875 29 C -0.142 4.142 30 H 0.215 0.785 31 H 0.108 0.892 32 H 0.100 0.900 33 H 0.109 0.891 34 H 0.115 0.885 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.070 0.930 44 H 0.062 0.938 45 H 0.025 0.975 46 H 0.069 0.931 47 H 0.263 0.737 48 H 0.033 0.967 49 H 0.073 0.927 50 H 0.057 0.943 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.724 6.975 21.231 22.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.197 4.197 3 C 0.103 3.897 4 N -0.328 5.328 5 C 0.317 3.683 6 O -0.412 6.412 7 C -0.147 4.147 8 H 0.137 0.863 9 C -0.186 4.186 10 C 0.310 3.690 11 O -0.403 6.403 12 N -0.355 5.355 13 C 0.001 3.999 14 C -0.229 4.229 15 C -0.006 4.006 16 C 0.034 3.966 17 C -0.186 4.186 18 C 0.026 3.974 19 N -0.330 5.330 20 C -0.390 4.390 21 H 0.105 0.895 22 C -0.177 4.177 23 N -0.556 5.556 24 Si 0.720 3.280 25 H -0.218 1.218 26 H -0.233 1.233 27 H -0.189 1.189 28 C -0.001 4.001 29 C -0.182 4.182 30 H 0.231 0.769 31 H 0.126 0.874 32 H 0.118 0.882 33 H 0.127 0.873 34 H 0.133 0.867 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.103 0.897 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.089 0.911 44 H 0.081 0.919 45 H 0.043 0.957 46 H 0.088 0.912 47 H 0.073 0.927 48 H 0.050 0.950 49 H 0.091 0.909 50 H 0.076 0.924 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.329 6.727 21.653 22.917 hybrid contribution -0.863 -0.724 0.264 1.157 sum 2.465 6.004 21.917 22.858 Atomic orbital electron populations 1.24867 0.95904 0.99139 1.01076 1.23409 0.94823 1.01232 1.00234 1.18267 0.83902 0.86409 1.01077 1.48217 1.63940 1.15045 1.05565 1.20076 0.78497 0.87648 0.82091 1.90701 1.49103 1.44000 1.57365 1.22253 1.00919 0.94133 0.97379 0.86289 1.22424 1.01292 0.96282 0.98552 1.20737 0.77050 0.85711 0.85502 1.90741 1.52897 1.17151 1.79505 1.48345 1.55435 1.14809 1.16904 1.21352 0.97181 1.00882 0.80451 1.22170 0.99840 1.02175 0.98717 1.22001 1.02857 0.84709 0.91001 1.21448 0.96267 0.88174 0.90676 1.22467 0.96918 1.01133 0.98048 1.20879 0.89595 0.92968 0.94006 1.44359 1.08411 1.76933 1.03283 1.18928 1.25801 1.14718 0.79543 0.89487 1.25296 0.99230 0.97905 0.95263 1.69760 1.39455 1.36963 1.09454 0.86944 0.78766 0.82512 0.79809 1.21830 1.23325 1.18939 1.21455 0.91326 0.93963 0.93330 1.22435 0.96010 1.01381 0.98349 0.76862 0.87392 0.88173 0.87291 0.86724 0.89903 0.90203 0.91383 0.92248 0.92215 0.89732 0.88907 0.89066 0.91139 0.91935 0.95667 0.91234 0.92693 0.94951 0.90907 0.92443 0.90952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.42 19.25 29.55 0.57 -1.85 16 2 C -0.20 -2.63 12.54 -37.12 -0.47 -3.10 16 3 C 0.23 2.66 5.08 -6.83 -0.03 2.62 16 4 N -0.60 -7.04 2.36 -169.38 -0.40 -7.44 16 5 C 0.53 6.22 6.82 -10.99 -0.07 6.14 16 6 O -0.53 -7.65 15.21 5.55 0.08 -7.56 16 7 C -0.13 -1.18 2.47 -90.14 -0.22 -1.40 16 8 H 0.12 0.93 7.37 -51.93 -0.38 0.55 16 9 C -0.15 -1.58 5.76 -26.72 -0.15 -1.73 16 10 C 0.52 6.61 8.02 -10.83 -0.09 6.52 16 11 O -0.53 -8.66 17.59 5.56 0.10 -8.56 16 12 N -0.62 -6.16 2.93 -172.38 -0.51 -6.66 16 13 C 0.12 0.98 6.65 -4.04 -0.03 0.95 16 14 C -0.17 -1.29 10.24 37.16 0.38 -0.91 16 15 C 0.12 1.01 6.78 -3.12 -0.02 0.99 16 16 C 0.14 1.73 2.16 -67.89 -0.15 1.58 16 17 C -0.15 -1.89 5.32 -26.61 -0.14 -2.03 16 18 C 0.15 2.54 6.52 -3.70 -0.02 2.52 16 19 N -0.61 -13.01 2.80 -172.31 -0.48 -13.49 16 20 C -0.26 -6.89 10.10 -15.06 -0.15 -7.04 16 21 H 0.09 2.46 8.06 -52.49 -0.42 2.03 16 22 C 0.02 0.61 5.36 -17.43 -0.09 0.52 16 23 N -0.91 -27.38 13.97 55.49 0.78 -26.60 16 24 Si 0.89 21.73 24.28 -169.99 -4.13 17.61 16 25 H -0.29 -6.94 6.77 56.52 0.38 -6.56 16 26 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 27 H -0.26 -6.16 5.80 56.52 0.33 -5.83 16 28 C 0.13 2.48 4.11 -3.71 -0.02 2.47 16 29 C -0.14 -2.23 4.87 -26.61 -0.13 -2.36 16 30 H 0.21 2.01 7.80 -54.10 -0.42 1.59 16 31 H 0.11 1.19 6.47 -51.93 -0.34 0.86 16 32 H 0.10 1.10 7.68 -51.93 -0.40 0.71 16 33 H 0.11 1.23 7.89 -51.93 -0.41 0.82 16 34 H 0.11 1.23 7.12 -51.92 -0.37 0.86 16 35 H 0.08 0.73 7.93 -51.93 -0.41 0.32 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.09 0.92 6.86 -51.93 -0.36 0.56 16 42 H 0.09 1.06 4.43 -51.93 -0.23 0.83 16 43 H 0.07 0.97 6.72 -51.93 -0.35 0.62 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.07 1.18 7.93 -51.93 -0.41 0.77 16 47 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 48 H 0.03 0.63 6.65 -51.93 -0.35 0.29 16 49 H 0.07 1.64 4.14 -51.93 -0.22 1.42 16 50 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 51 H 0.07 1.23 7.30 -51.93 -0.38 0.85 16 LS Contribution 398.68 15.07 6.01 6.01 Total: -1.00 -33.88 398.68 -7.44 -41.32 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -8.05 Total: 1.50 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: -0.84 Total: 3.89 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: -0.61 Total: -54.19 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: 0.18 Total: -16.13 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.13 Total: 17.61 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.88 -7.44 -41.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483985113.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.231 kcal (2) G-P(sol) polarization free energy of solvation -33.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds