Wall clock time and date at job start Wed Apr 1 2020 06:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47289 * 336.95835 * 3 2 1 5 5 C 1.34772 * 120.00114 * 275.50086 * 4 3 2 6 6 O 1.21284 * 119.99967 * 5.65584 * 5 4 3 7 7 C 1.50699 * 120.00243 * 185.65695 * 5 4 3 8 8 H 1.09005 * 110.85592 * 46.53466 * 7 5 4 9 9 C 1.54623 * 110.96890 * 282.74668 * 7 5 4 10 10 C 1.51341 * 104.16941 * 217.10548 * 9 7 5 11 11 O 1.21282 * 124.93376 * 196.22000 * 10 9 7 12 12 N 1.34418 * 110.12989 * 16.20747 * 10 9 7 13 13 C 1.46501 * 124.35384 * 180.46060 * 12 10 9 14 14 C 1.53001 * 109.46708 * 269.97393 * 13 12 10 15 15 C 1.46770 * 111.30062 * 0.43313 * 12 10 9 16 16 C 1.46499 * 119.99957 * 95.50310 * 4 3 2 17 17 C 1.53032 * 109.46017 * 60.02558 * 16 4 3 18 18 C 1.53197 * 109.31233 * 178.59987 * 17 16 4 19 19 N 1.46934 * 108.76256 * 54.65740 * 18 17 16 20 20 C 1.36939 * 120.62786 * 126.40675 * 19 18 17 21 21 H 1.07999 * 120.00388 * 332.14256 * 20 19 18 22 22 C 1.38810 * 119.99550 * 152.14596 * 20 19 18 23 23 N 1.31615 * 119.99891 * 166.32002 * 22 20 19 24 24 Si 1.86805 * 120.00224 * 346.31373 * 22 20 19 25 25 H 1.48507 * 109.46612 * 95.12110 * 24 22 20 26 26 H 1.48495 * 109.47091 * 215.11931 * 24 22 20 27 27 H 1.48501 * 109.47118 * 335.12227 * 24 22 20 28 28 C 1.46927 * 118.73747 * 306.38048 * 19 18 17 29 29 C 1.53042 * 109.45957 * 299.97066 * 16 4 3 30 30 H 4.40642 * 5.51312 * 179.97438 * 4 1 2 31 31 H 1.08996 * 109.46959 * 96.96206 * 3 2 1 32 32 H 1.09004 * 109.46902 * 216.95868 * 3 2 1 33 33 H 1.09000 * 110.48718 * 335.76274 * 9 7 5 34 34 H 1.09008 * 110.48732 * 98.40497 * 9 7 5 35 35 H 1.09000 * 109.47081 * 29.96932 * 13 12 10 36 36 H 1.08999 * 109.47514 * 149.97070 * 13 12 10 37 37 H 1.09005 * 109.46764 * 179.97438 * 14 13 12 38 38 H 1.09000 * 109.46973 * 299.99605 * 14 13 12 39 39 H 1.08997 * 109.47667 * 60.00070 * 14 13 12 40 40 H 1.09000 * 110.24451 * 223.99068 * 15 12 10 41 41 H 1.08994 * 110.24133 * 101.98541 * 15 12 10 42 42 H 1.08998 * 109.45776 * 180.02562 * 16 4 3 43 43 H 1.08999 * 109.50112 * 298.56320 * 17 16 4 44 44 H 1.09002 * 109.50028 * 58.66987 * 17 16 4 45 45 H 1.09000 * 109.60217 * 294.87229 * 18 17 16 46 46 H 1.09007 * 109.70290 * 174.50287 * 18 17 16 47 47 H 0.97005 * 120.00300 * 179.97438 * 23 22 20 48 48 H 1.08996 * 109.58959 * 293.82630 * 28 19 18 49 49 H 1.09003 * 109.70084 * 173.46384 * 28 19 18 50 50 H 1.09007 * 109.49821 * 301.34033 * 29 16 4 51 51 H 1.08999 * 109.49742 * 61.43715 * 29 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.2701 0.5406 5 6 3.2542 -1.4343 1.8730 6 8 2.8613 -0.5703 2.6280 7 6 3.8757 -2.6915 2.4246 8 1 4.7970 -2.9337 1.8948 9 6 2.8787 -3.8720 2.3692 10 6 3.1526 -4.6482 3.6392 11 8 2.7885 -5.7857 3.8502 12 7 3.8581 -3.8937 4.4994 13 6 4.3007 -4.3425 5.8219 14 6 3.2272 -4.0080 6.8595 15 6 4.1287 -2.5627 3.9432 16 6 3.4943 -2.3624 -0.3671 17 6 4.6165 -1.9017 -1.3001 18 6 5.0136 -3.0573 -2.2241 19 7 3.8125 -3.5414 -2.9184 20 6 3.7858 -3.6336 -4.2844 21 1 4.4004 -2.9769 -4.8821 22 6 2.9686 -4.5712 -4.9008 23 7 2.7322 -4.4899 -6.1930 24 14 2.2045 -5.9485 -3.8964 25 1 0.8345 -5.5554 -3.4791 26 1 2.1362 -7.1824 -4.7197 27 1 3.0351 -6.2023 -2.6919 28 6 2.6409 -3.9252 -2.1191 29 6 2.2708 -2.7600 -1.1960 30 1 -1.0498 -0.0002 0.0003 31 1 3.0092 0.1254 -1.0201 32 1 3.0090 0.8220 0.6179 33 1 1.8525 -3.5047 2.3605 34 1 3.0703 -4.4924 1.4935 35 1 4.4653 -5.4198 5.8037 36 1 5.2302 -3.8374 6.0848 37 1 3.5564 -4.3423 7.8434 38 1 3.0627 -2.9306 6.8777 39 1 2.2978 -4.5131 6.5967 40 1 5.1644 -2.2792 4.1303 41 1 3.4512 -1.8277 4.3775 42 1 3.8335 -3.2203 0.2135 43 1 4.2692 -1.0597 -1.8988 44 1 5.4795 -1.5966 -0.7082 45 1 5.4452 -3.8657 -1.6340 46 1 5.7429 -2.7090 -2.9555 47 1 2.1614 -5.1452 -6.6239 48 1 2.8792 -4.8042 -1.5203 49 1 1.8029 -4.1488 -2.7793 50 1 1.4638 -3.0657 -0.5299 51 1 1.9458 -1.9098 -1.7957 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483985113.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:14:57 Heat of formation + Delta-G solvation = 4.248898 kcal Electronic energy + Delta-G solvation = -32290.346011 eV Core-core repulsion = 28191.683477 eV Total energy + Delta-G solvation = -4098.662534 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.17399 -40.81570 -39.35483 -37.54396 -36.89168 -35.14601 -34.47568 -33.65630 -31.99982 -31.78068 -30.93924 -28.93858 -28.32083 -26.84990 -24.82361 -24.50201 -23.83013 -23.35463 -21.18924 -20.80136 -20.15438 -19.09570 -18.82855 -18.71477 -17.78890 -17.26534 -17.06946 -16.89938 -16.31147 -16.29142 -15.92622 -15.35679 -15.22044 -15.02857 -14.92190 -14.85076 -14.62529 -14.57170 -14.46589 -14.15409 -14.07529 -13.83070 -13.71668 -13.43545 -13.26991 -12.95063 -12.65998 -12.58482 -12.56349 -12.31930 -12.18299 -12.01090 -11.98034 -11.73768 -11.53552 -11.44145 -11.34792 -11.16033 -11.04224 -10.78819 -10.68350 -9.88003 -9.79536 -8.89991 -8.11903 -5.47587 1.30803 1.31822 1.41807 1.43164 1.47089 1.50435 1.91739 1.95894 2.33064 2.43276 3.03938 3.13227 3.28136 3.35563 3.47298 3.54174 3.69571 3.80322 3.97347 4.00450 4.10885 4.16762 4.23722 4.33954 4.37050 4.45773 4.46019 4.50022 4.52604 4.55769 4.66499 4.70518 4.77709 4.79750 4.87245 4.88817 4.92876 4.93961 5.03898 5.09137 5.16112 5.22533 5.24566 5.35587 5.52364 5.55329 5.91134 5.99590 6.16613 6.27900 6.67889 6.95347 6.99205 7.04168 7.65871 8.04130 9.07923 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011247 B = 0.003604 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.915858 B = 7768.120558 C = 9047.936053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.224 4.224 3 C 0.222 3.778 4 N -0.592 5.592 5 C 0.534 3.466 6 O -0.559 6.559 7 C -0.117 4.117 8 H 0.148 0.852 9 C -0.143 4.143 10 C 0.514 3.486 11 O -0.575 6.575 12 N -0.613 5.613 13 C 0.116 3.884 14 C -0.166 4.166 15 C 0.120 3.880 16 C 0.147 3.853 17 C -0.134 4.134 18 C 0.145 3.855 19 N -0.620 5.620 20 C -0.238 4.238 21 H 0.056 0.944 22 C -0.042 4.042 23 N -0.967 5.967 24 Si 0.946 3.054 25 H -0.286 1.286 26 H -0.321 1.321 27 H -0.241 1.241 28 C 0.121 3.879 29 C -0.131 4.131 30 H 0.237 0.763 31 H 0.114 0.886 32 H 0.109 0.891 33 H 0.101 0.899 34 H 0.119 0.881 35 H 0.072 0.928 36 H 0.113 0.887 37 H 0.087 0.913 38 H 0.062 0.938 39 H 0.032 0.968 40 H 0.117 0.883 41 H 0.082 0.918 42 H 0.113 0.887 43 H 0.061 0.939 44 H 0.101 0.899 45 H 0.048 0.952 46 H 0.061 0.939 47 H 0.259 0.741 48 H 0.046 0.954 49 H 0.042 0.958 50 H 0.067 0.933 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.349 7.708 24.433 26.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.226 4.226 3 C 0.101 3.899 4 N -0.322 5.322 5 C 0.323 3.677 6 O -0.437 6.437 7 C -0.139 4.139 8 H 0.166 0.834 9 C -0.183 4.183 10 C 0.303 3.697 11 O -0.455 6.455 12 N -0.346 5.346 13 C -0.005 4.005 14 C -0.224 4.224 15 C -0.003 4.003 16 C 0.044 3.956 17 C -0.173 4.173 18 C 0.020 3.980 19 N -0.345 5.345 20 C -0.367 4.367 21 H 0.074 0.926 22 C -0.236 4.236 23 N -0.614 5.614 24 Si 0.777 3.223 25 H -0.214 1.214 26 H -0.251 1.251 27 H -0.164 1.164 28 C -0.004 4.004 29 C -0.171 4.171 30 H 0.253 0.747 31 H 0.132 0.868 32 H 0.127 0.873 33 H 0.119 0.881 34 H 0.137 0.863 35 H 0.090 0.910 36 H 0.131 0.869 37 H 0.106 0.894 38 H 0.081 0.919 39 H 0.051 0.949 40 H 0.135 0.865 41 H 0.100 0.900 42 H 0.130 0.870 43 H 0.079 0.921 44 H 0.119 0.881 45 H 0.066 0.934 46 H 0.080 0.920 47 H 0.067 0.933 48 H 0.063 0.937 49 H 0.061 0.939 50 H 0.085 0.915 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.994 7.516 24.937 26.519 hybrid contribution -1.350 -0.801 -0.677 1.709 sum 3.644 6.715 24.259 25.434 Atomic orbital electron populations 1.25628 0.96937 0.98482 1.00539 1.23977 0.95830 1.01916 1.00830 1.18388 0.83220 0.86708 1.01616 1.48100 1.63818 1.14693 1.05561 1.20371 0.77832 0.87944 0.81589 1.90705 1.50060 1.45184 1.57765 1.22298 1.01263 0.92073 0.98231 0.83443 1.22385 1.01368 0.96630 0.97950 1.21043 0.76890 0.85321 0.86475 1.90713 1.54959 1.19267 1.80570 1.48485 1.54065 1.14877 1.17166 1.21578 0.98592 1.00751 0.79564 1.22132 0.98581 1.02047 0.99687 1.22104 1.04515 0.83481 0.90176 1.21289 0.94539 0.89125 0.90642 1.22325 0.98381 0.99046 0.97593 1.21125 0.87715 0.94754 0.94389 1.44497 1.10854 1.77358 1.01816 1.18895 1.23294 1.12592 0.81962 0.92610 1.25941 1.01014 1.00578 0.96068 1.69911 1.41778 1.38221 1.11477 0.85997 0.78555 0.78880 0.78861 1.21406 1.25092 1.16411 1.21447 0.89707 0.96038 0.93246 1.22244 0.97851 0.99081 0.97921 0.74651 0.86846 0.87331 0.88054 0.86274 0.90997 0.86861 0.89408 0.91911 0.94873 0.86455 0.89996 0.86968 0.92066 0.88054 0.93416 0.92041 0.93256 0.93652 0.93950 0.91472 0.92574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.73 19.25 74.32 1.43 -3.30 16 2 C -0.22 -5.70 12.54 31.13 0.39 -5.31 16 3 C 0.22 4.74 5.08 84.57 0.43 5.17 16 4 N -0.59 -11.95 2.36 -808.18 -1.91 -13.85 16 5 C 0.53 10.63 6.82 87.66 0.60 11.23 16 6 O -0.56 -14.39 15.21 -3.04 -0.05 -14.44 16 7 C -0.12 -1.72 2.47 -10.48 -0.03 -1.75 16 8 H 0.15 1.40 7.37 -2.38 -0.02 1.38 16 9 C -0.14 -2.71 5.76 30.60 0.18 -2.53 16 10 C 0.51 12.11 8.02 87.92 0.71 12.82 16 11 O -0.58 -18.66 17.59 -3.04 -0.05 -18.71 16 12 N -0.61 -10.48 2.93 -817.89 -2.40 -12.88 16 13 C 0.12 1.55 6.65 86.38 0.57 2.12 16 14 C -0.17 -2.21 10.24 71.98 0.74 -1.48 16 15 C 0.12 1.59 6.78 86.83 0.59 2.18 16 16 C 0.15 3.17 2.16 45.02 0.10 3.26 16 17 C -0.13 -2.96 5.32 30.67 0.16 -2.79 16 18 C 0.15 4.42 6.52 86.36 0.56 4.98 16 19 N -0.62 -25.78 2.80 -699.06 -1.96 -27.74 16 20 C -0.24 -12.67 10.10 84.03 0.85 -11.82 16 21 H 0.06 3.27 8.06 -2.91 -0.02 3.24 16 22 C -0.04 -2.41 5.36 84.86 0.45 -1.95 16 23 N -0.97 -60.25 13.97 21.65 0.30 -59.95 16 24 Si 0.95 45.49 24.28 68.60 1.67 47.15 16 25 H -0.29 -13.38 6.77 99.48 0.67 -12.70 16 26 H -0.32 -16.12 7.11 99.48 0.71 -15.41 16 27 H -0.24 -10.44 5.80 99.48 0.58 -9.86 16 28 C 0.12 4.56 4.11 86.36 0.35 4.91 16 29 C -0.13 -3.83 4.87 30.67 0.15 -3.68 16 30 H 0.24 4.05 7.80 -4.43 -0.03 4.02 16 31 H 0.11 2.27 6.47 -2.39 -0.02 2.26 16 32 H 0.11 2.13 7.68 -2.39 -0.02 2.12 16 33 H 0.10 2.10 7.89 -2.39 -0.02 2.08 16 34 H 0.12 2.15 7.12 -2.38 -0.02 2.14 16 35 H 0.07 1.15 7.93 -2.39 -0.02 1.13 16 36 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 38 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.08 1.35 6.86 -2.39 -0.02 1.34 16 42 H 0.11 2.03 4.43 -2.39 -0.01 2.02 16 43 H 0.06 1.51 6.72 -2.39 -0.02 1.49 16 44 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.06 1.97 7.93 -2.38 -0.02 1.95 16 47 H 0.26 15.48 8.31 -92.70 -0.77 14.71 16 48 H 0.05 1.61 6.65 -2.39 -0.02 1.59 16 49 H 0.04 1.87 4.14 -2.39 -0.01 1.86 16 50 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 51 H 0.06 1.84 7.30 -2.39 -0.02 1.82 16 Total: -1.00 -77.39 398.68 4.60 -72.78 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: 0.76 Total: 15.55 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: 8.24 Total: 12.07 kcal Atomic # 7 Polarization: -108.45 SS G_CDS: -5.96 Total: -114.41 kcal Atomic # 8 Polarization: -33.05 SS G_CDS: -0.10 Total: -33.15 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.67 Total: 47.15 kcal Total: -77.39 4.60 -72.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483985113.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.033 kcal (2) G-P(sol) polarization free energy of solvation -77.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds