Wall clock time and date at job start Wed Apr 1 2020 04:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47197 * 2 1 4 4 O 1.42905 * 109.46714 * 119.99665 * 2 1 3 5 5 C 1.35682 * 116.99594 * 269.99671 * 4 2 1 6 6 C 1.38913 * 119.67835 * 180.02562 * 5 4 2 7 7 C 1.38379 * 119.10867 * 180.02562 * 6 5 4 8 8 C 1.38831 * 118.48886 * 359.97438 * 7 6 5 9 9 C 1.38050 * 119.28265 * 0.02607 * 8 7 6 10 10 N 1.31958 * 120.83706 * 359.97034 * 9 8 7 11 11 C 1.50696 * 109.47179 * 239.99447 * 2 1 3 12 12 O 1.21277 * 119.99885 * 245.00491 * 11 2 1 13 13 N 1.34776 * 119.99773 * 64.99980 * 11 2 1 14 14 C 1.46505 * 119.99788 * 180.02562 * 13 11 2 15 15 C 1.52996 * 109.47053 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.49681 * 299.99722 * 15 14 13 17 17 C 1.53044 * 109.49839 * 179.97438 * 15 14 13 18 18 C 1.53038 * 109.53954 * 178.71315 * 17 15 14 19 19 C 1.53195 * 109.33562 * 61.31687 * 18 17 15 20 20 N 1.46921 * 108.77761 * 305.37881 * 19 18 17 21 21 C 1.36935 * 120.63151 * 233.63326 * 20 19 18 22 22 H 1.08009 * 119.99945 * 27.66853 * 21 20 19 23 23 C 1.38808 * 120.00313 * 207.67022 * 21 20 19 24 24 N 1.31617 * 119.99897 * 17.35764 * 23 21 20 25 25 Si 1.86802 * 120.00448 * 197.36197 * 23 21 20 26 26 H 1.48495 * 109.47295 * 89.99569 * 25 23 21 27 27 H 1.48498 * 109.47298 * 209.99895 * 25 23 21 28 28 H 1.48503 * 109.46472 * 329.99695 * 25 23 21 29 29 C 1.46922 * 118.74071 * 53.61222 * 20 19 18 30 30 H 1.08993 * 109.47216 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47119 * 300.00737 * 1 2 3 32 32 H 1.08998 * 109.47092 * 60.00034 * 1 2 3 33 33 H 1.08000 * 120.44958 * 359.97438 * 6 5 4 34 34 H 1.08003 * 120.75667 * 179.72370 * 7 6 5 35 35 H 1.07999 * 120.35961 * 179.97438 * 8 7 6 36 36 H 1.08004 * 119.57715 * 179.97438 * 9 8 7 37 37 H 0.96992 * 120.00178 * 0.02562 * 13 11 2 38 38 H 1.09000 * 109.47048 * 300.00507 * 14 13 11 39 39 H 1.08998 * 109.46885 * 60.00194 * 14 13 11 40 40 H 1.09000 * 109.47215 * 60.00512 * 16 15 14 41 41 H 1.09003 * 109.47300 * 179.97438 * 16 15 14 42 42 H 1.08998 * 109.47615 * 300.00330 * 16 15 14 43 43 H 1.08996 * 109.45854 * 298.70484 * 17 15 14 44 44 H 1.09002 * 109.45958 * 58.66098 * 17 15 14 45 45 H 1.08993 * 109.47261 * 301.36474 * 18 17 15 46 46 H 1.08997 * 109.49464 * 181.28011 * 18 17 15 47 47 H 1.08999 * 109.58270 * 185.58931 * 19 18 17 48 48 H 1.09000 * 109.70109 * 65.24132 * 19 18 17 49 49 H 0.97006 * 120.00571 * 180.02562 * 24 23 21 50 50 H 1.08999 * 109.59318 * 186.60758 * 29 20 19 51 51 H 1.09000 * 109.70384 * 66.24546 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.2116 0.0831 2.2742 6 6 2.6746 -0.5146 3.4396 7 6 2.8794 0.2683 4.5621 8 6 2.6130 1.6282 4.4787 9 6 2.1548 2.1547 3.2876 10 7 1.9692 1.3825 2.2337 11 6 2.0324 -0.7105 -1.2304 12 8 2.6529 -1.7468 -1.1213 13 7 1.7919 -0.1944 -2.4519 14 6 2.2798 -0.8854 -3.6481 15 6 1.8757 -0.0949 -4.8941 16 6 0.3510 0.0163 -4.9561 17 6 2.3856 -0.8160 -6.1441 18 6 1.9543 -0.0430 -7.3926 19 6 2.5690 1.3598 -7.3582 20 7 2.2011 2.0064 -6.0912 21 6 1.6005 3.2370 -6.0846 22 1 0.9995 3.5491 -6.9259 23 6 1.7641 4.0833 -4.9966 24 7 2.7422 3.8738 -4.1411 25 14 0.5962 5.5195 -4.7464 26 1 -0.5556 5.0823 -3.9174 27 1 1.3106 6.6244 -4.0578 28 1 0.1052 5.9936 -6.0653 29 6 2.4894 1.3073 -4.8315 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 2.8713 -1.5761 3.4695 34 1 3.2344 -0.1694 5.4835 35 1 2.7618 2.2673 5.3365 36 1 1.9457 3.2120 3.2174 37 1 1.2959 0.6346 -2.5391 38 1 3.3661 -0.9641 -3.6045 39 1 1.8447 -1.8837 -3.6937 40 1 -0.0122 0.5306 -4.0663 41 1 0.0636 0.5799 -5.8437 42 1 -0.0846 -0.9818 -5.0021 43 1 3.4735 -0.8741 -6.1113 44 1 1.9692 -1.8227 -6.1779 45 1 0.8675 0.0363 -7.4134 46 1 2.2983 -0.5692 -8.2830 47 1 2.1860 1.9470 -8.1928 48 1 3.6542 1.2873 -7.4299 49 1 2.8564 4.4649 -3.3805 50 1 2.0539 1.8598 -3.9990 51 1 3.5677 1.2284 -4.6935 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484175499.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:50 Heat of formation + Delta-G solvation = -19.664450 kcal Electronic energy + Delta-G solvation = -31604.204710 eV Core-core repulsion = 27504.505215 eV Total energy + Delta-G solvation = -4099.699495 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.87267 -39.75001 -38.55200 -37.55287 -34.77319 -33.31739 -32.68593 -32.32016 -31.14171 -30.10497 -29.83175 -26.60837 -25.88267 -25.32646 -24.62494 -23.69287 -22.85008 -22.13718 -20.60869 -20.07559 -18.62184 -18.14704 -17.39099 -16.71180 -16.46684 -16.06762 -15.82728 -15.58447 -15.00813 -14.81466 -14.64299 -14.18270 -13.92969 -13.82657 -13.70086 -13.45671 -13.27682 -13.18254 -13.11179 -12.73361 -12.41061 -12.28029 -12.20726 -12.14686 -11.84128 -11.62147 -11.32649 -11.16115 -10.98258 -10.88321 -10.67691 -10.40919 -10.20167 -10.13795 -10.10874 -9.85279 -9.77229 -9.66277 -9.45998 -9.39346 -8.74377 -8.64771 -8.51070 -6.69865 -5.82825 -3.24947 0.98304 1.09077 2.58273 2.79463 3.32997 3.41591 3.42222 3.60885 3.67658 4.12752 4.45149 4.65120 4.77249 4.84371 4.91259 4.94709 5.03946 5.11647 5.15700 5.27333 5.42453 5.49952 5.51554 5.56142 5.57407 5.63603 5.76646 5.77722 5.94647 5.98992 6.00234 6.03107 6.08035 6.15507 6.24539 6.24706 6.39889 6.42249 6.52920 6.59902 6.72775 6.81710 6.86428 6.95275 7.02802 7.10958 7.26839 7.55329 7.68314 7.75384 7.76918 8.39681 8.41490 9.17009 9.80372 10.37806 11.24976 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011023 B = 0.003168 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2539.437978 B = 8837.635647 C =10684.329275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.071 3.929 3 H 0.117 0.883 4 O -0.276 6.276 5 C 0.326 3.674 6 C -0.191 4.191 7 C -0.042 4.042 8 C -0.217 4.217 9 C 0.142 3.858 10 N -0.539 5.539 11 C 0.516 3.484 12 O -0.533 6.533 13 N -0.710 5.710 14 C 0.138 3.862 15 C -0.103 4.103 16 C -0.126 4.126 17 C -0.095 4.095 18 C -0.135 4.135 19 C 0.143 3.857 20 N -0.589 5.589 21 C -0.249 4.249 22 H 0.065 0.935 23 C 0.003 3.997 24 N -0.901 5.901 25 Si 0.898 3.102 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.280 1.280 29 C 0.185 3.815 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.142 0.858 34 H 0.140 0.860 35 H 0.136 0.864 36 H 0.160 0.840 37 H 0.407 0.593 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.044 0.956 41 H 0.072 0.928 42 H 0.036 0.964 43 H 0.056 0.944 44 H 0.048 0.952 45 H 0.062 0.938 46 H 0.049 0.951 47 H 0.052 0.948 48 H 0.016 0.984 49 H 0.254 0.746 50 H 0.088 0.912 51 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.284 -7.413 12.555 14.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.011 3.989 3 H 0.135 0.865 4 O -0.182 6.182 5 C 0.147 3.853 6 C -0.212 4.212 7 C -0.067 4.067 8 C -0.238 4.238 9 C -0.013 4.013 10 N -0.263 5.263 11 C 0.300 3.700 12 O -0.410 6.410 13 N -0.364 5.364 14 C 0.014 3.986 15 C -0.105 4.105 16 C -0.183 4.183 17 C -0.133 4.133 18 C -0.174 4.174 19 C 0.017 3.983 20 N -0.311 5.311 21 C -0.379 4.379 22 H 0.083 0.917 23 C -0.195 4.195 24 N -0.546 5.546 25 Si 0.728 3.272 26 H -0.214 1.214 27 H -0.218 1.218 28 H -0.205 1.205 29 C 0.059 3.941 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.160 0.840 34 H 0.158 0.842 35 H 0.154 0.846 36 H 0.177 0.823 37 H 0.244 0.756 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.063 0.937 41 H 0.091 0.909 42 H 0.055 0.945 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.081 0.919 46 H 0.068 0.932 47 H 0.070 0.930 48 H 0.034 0.966 49 H 0.064 0.936 50 H 0.106 0.894 51 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -3.053 -7.969 11.900 14.644 hybrid contribution -0.451 1.069 0.882 1.458 sum -3.504 -6.900 12.782 14.942 Atomic orbital electron populations 1.22147 0.92425 1.03413 1.03987 1.22122 0.95759 0.98349 0.82657 0.86549 1.86369 1.79728 1.34443 1.17652 1.19936 0.90879 0.87425 0.87096 1.21082 1.06394 1.02215 0.91475 1.21402 0.94248 0.93463 0.97603 1.21977 1.05571 0.96211 1.00010 1.22468 0.92329 0.99302 0.87228 1.67305 1.21737 1.04696 1.32551 1.20088 0.80151 0.85417 0.84351 1.90694 1.40226 1.23457 1.86623 1.45942 1.57370 1.27985 1.05073 1.21408 0.99089 0.95004 0.83083 1.21546 0.96961 0.99475 0.92503 1.21726 0.94282 0.99740 1.02589 1.21347 1.00129 0.97352 0.94510 1.22041 1.01185 0.98052 0.96109 1.20928 0.95987 0.91439 0.89970 1.43983 1.69998 1.17456 0.99627 1.19182 1.22615 0.91750 1.04350 0.91704 1.25001 0.97237 0.97467 0.99816 1.70038 1.29167 1.39450 1.15927 0.86359 0.80674 0.82221 0.77973 1.21420 1.21813 1.20503 1.20789 0.96116 0.86686 0.90517 0.91361 0.90922 0.90061 0.84030 0.84236 0.84612 0.82279 0.75626 0.91751 0.92132 0.93702 0.90918 0.94470 0.92553 0.93351 0.91940 0.93201 0.92960 0.96567 0.93637 0.89383 0.96445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.49 37.16 0.35 -1.65 16 2 C 0.07 1.07 2.90 -27.88 -0.08 0.99 16 3 H 0.12 1.79 6.98 -51.93 -0.36 1.43 16 4 O -0.28 -4.36 9.30 -38.61 -0.36 -4.72 16 5 C 0.33 4.53 7.45 -17.12 -0.13 4.40 16 6 C -0.19 -2.13 10.04 -39.28 -0.39 -2.52 16 7 C -0.04 -0.36 10.17 -39.31 -0.40 -0.76 16 8 C -0.22 -1.83 10.11 -39.43 -0.40 -2.22 16 9 C 0.14 1.47 11.18 -17.57 -0.20 1.28 16 10 N -0.54 -7.23 8.65 -13.33 -0.12 -7.35 16 11 C 0.52 8.88 7.18 -10.99 -0.08 8.80 16 12 O -0.53 -10.91 16.51 -14.30 -0.24 -11.15 16 13 N -0.71 -11.63 4.96 -60.30 -0.30 -11.93 16 14 C 0.14 2.30 4.57 -4.04 -0.02 2.28 16 15 C -0.10 -1.78 0.53 -154.39 -0.08 -1.86 16 16 C -0.13 -2.09 7.81 37.16 0.29 -1.80 16 17 C -0.10 -1.53 4.71 -26.69 -0.13 -1.66 16 18 C -0.13 -2.22 5.74 -26.61 -0.15 -2.37 16 19 C 0.14 2.88 6.52 -3.71 -0.02 2.85 16 20 N -0.59 -13.79 2.43 -172.32 -0.42 -14.21 16 21 C -0.25 -6.45 9.58 -15.06 -0.14 -6.60 16 22 H 0.07 1.67 7.89 -52.48 -0.41 1.26 16 23 C 0.00 0.09 4.91 -17.43 -0.09 0.00 16 24 N -0.90 -24.78 11.19 55.49 0.62 -24.16 16 25 Si 0.90 20.75 29.59 -169.99 -5.03 15.72 16 26 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 28 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 29 C 0.19 4.06 3.73 -3.71 -0.01 4.05 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.08 0.92 7.93 -51.93 -0.41 0.51 16 33 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 34 H 0.14 0.75 8.06 -52.48 -0.42 0.33 16 35 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 36 H 0.16 1.24 8.06 -52.48 -0.42 0.82 16 37 H 0.41 6.54 6.01 -40.82 -0.25 6.29 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.04 0.73 6.86 -51.93 -0.36 0.38 16 41 H 0.07 1.33 5.97 -51.93 -0.31 1.02 16 42 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.06 1.04 6.33 -51.93 -0.33 0.71 16 46 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 48 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 50 H 0.09 2.10 4.94 -51.93 -0.26 1.85 16 51 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 403.36 15.07 6.08 6.08 Total: -1.00 -31.39 403.36 -9.59 -40.98 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -8.15 Total: 7.53 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: -1.68 Total: 3.20 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: -0.21 Total: -57.65 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -0.60 Total: -15.86 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.72 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.39 -9.59 -40.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484175499.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.316 kcal (2) G-P(sol) polarization free energy of solvation -31.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds