Wall clock time and date at job start Wed Apr 1 2020 04:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47197 * 2 1 4 4 O 1.42905 * 109.46714 * 119.99665 * 2 1 3 5 5 C 1.35682 * 116.99594 * 269.99671 * 4 2 1 6 6 C 1.38913 * 119.67835 * 180.02562 * 5 4 2 7 7 C 1.38379 * 119.10867 * 180.02562 * 6 5 4 8 8 C 1.38831 * 118.48886 * 359.97438 * 7 6 5 9 9 C 1.38050 * 119.28265 * 0.02607 * 8 7 6 10 10 N 1.31958 * 120.83706 * 359.97034 * 9 8 7 11 11 C 1.50696 * 109.47179 * 239.99447 * 2 1 3 12 12 O 1.21277 * 119.99885 * 245.00491 * 11 2 1 13 13 N 1.34776 * 119.99773 * 64.99980 * 11 2 1 14 14 C 1.46505 * 119.99788 * 180.02562 * 13 11 2 15 15 C 1.52996 * 109.47053 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.49681 * 299.99722 * 15 14 13 17 17 C 1.53044 * 109.49839 * 179.97438 * 15 14 13 18 18 C 1.53038 * 109.53954 * 178.71315 * 17 15 14 19 19 C 1.53195 * 109.33562 * 61.31687 * 18 17 15 20 20 N 1.46921 * 108.77761 * 305.37881 * 19 18 17 21 21 C 1.36935 * 120.63151 * 233.63326 * 20 19 18 22 22 H 1.08009 * 119.99945 * 27.66853 * 21 20 19 23 23 C 1.38808 * 120.00313 * 207.67022 * 21 20 19 24 24 N 1.31617 * 119.99897 * 17.35764 * 23 21 20 25 25 Si 1.86802 * 120.00448 * 197.36197 * 23 21 20 26 26 H 1.48495 * 109.47295 * 89.99569 * 25 23 21 27 27 H 1.48498 * 109.47298 * 209.99895 * 25 23 21 28 28 H 1.48503 * 109.46472 * 329.99695 * 25 23 21 29 29 C 1.46922 * 118.74071 * 53.61222 * 20 19 18 30 30 H 1.08993 * 109.47216 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47119 * 300.00737 * 1 2 3 32 32 H 1.08998 * 109.47092 * 60.00034 * 1 2 3 33 33 H 1.08000 * 120.44958 * 359.97438 * 6 5 4 34 34 H 1.08003 * 120.75667 * 179.72370 * 7 6 5 35 35 H 1.07999 * 120.35961 * 179.97438 * 8 7 6 36 36 H 1.08004 * 119.57715 * 179.97438 * 9 8 7 37 37 H 0.96992 * 120.00178 * 0.02562 * 13 11 2 38 38 H 1.09000 * 109.47048 * 300.00507 * 14 13 11 39 39 H 1.08998 * 109.46885 * 60.00194 * 14 13 11 40 40 H 1.09000 * 109.47215 * 60.00512 * 16 15 14 41 41 H 1.09003 * 109.47300 * 179.97438 * 16 15 14 42 42 H 1.08998 * 109.47615 * 300.00330 * 16 15 14 43 43 H 1.08996 * 109.45854 * 298.70484 * 17 15 14 44 44 H 1.09002 * 109.45958 * 58.66098 * 17 15 14 45 45 H 1.08993 * 109.47261 * 301.36474 * 18 17 15 46 46 H 1.08997 * 109.49464 * 181.28011 * 18 17 15 47 47 H 1.08999 * 109.58270 * 185.58931 * 19 18 17 48 48 H 1.09000 * 109.70109 * 65.24132 * 19 18 17 49 49 H 0.97006 * 120.00571 * 180.02562 * 24 23 21 50 50 H 1.08999 * 109.59318 * 186.60758 * 29 20 19 51 51 H 1.09000 * 109.70384 * 66.24546 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.2116 0.0831 2.2742 6 6 2.6746 -0.5146 3.4396 7 6 2.8794 0.2683 4.5621 8 6 2.6130 1.6282 4.4787 9 6 2.1548 2.1547 3.2876 10 7 1.9692 1.3825 2.2337 11 6 2.0324 -0.7105 -1.2304 12 8 2.6529 -1.7468 -1.1213 13 7 1.7919 -0.1944 -2.4519 14 6 2.2798 -0.8854 -3.6481 15 6 1.8757 -0.0949 -4.8941 16 6 0.3510 0.0163 -4.9561 17 6 2.3856 -0.8160 -6.1441 18 6 1.9543 -0.0430 -7.3926 19 6 2.5690 1.3598 -7.3582 20 7 2.2011 2.0064 -6.0912 21 6 1.6005 3.2370 -6.0846 22 1 0.9995 3.5491 -6.9259 23 6 1.7641 4.0833 -4.9966 24 7 2.7422 3.8738 -4.1411 25 14 0.5962 5.5195 -4.7464 26 1 -0.5556 5.0823 -3.9174 27 1 1.3106 6.6244 -4.0578 28 1 0.1052 5.9936 -6.0653 29 6 2.4894 1.3073 -4.8315 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 2.8713 -1.5761 3.4695 34 1 3.2344 -0.1694 5.4835 35 1 2.7618 2.2673 5.3365 36 1 1.9457 3.2120 3.2174 37 1 1.2959 0.6346 -2.5391 38 1 3.3661 -0.9641 -3.6045 39 1 1.8447 -1.8837 -3.6937 40 1 -0.0122 0.5306 -4.0663 41 1 0.0636 0.5799 -5.8437 42 1 -0.0846 -0.9818 -5.0021 43 1 3.4735 -0.8741 -6.1113 44 1 1.9692 -1.8227 -6.1779 45 1 0.8675 0.0363 -7.4134 46 1 2.2983 -0.5692 -8.2830 47 1 2.1860 1.9470 -8.1928 48 1 3.6542 1.2873 -7.4299 49 1 2.8564 4.4649 -3.3805 50 1 2.0539 1.8598 -3.9990 51 1 3.5677 1.2284 -4.6935 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484175499.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:49 Heat of formation + Delta-G solvation = -38.523640 kcal Electronic energy + Delta-G solvation = -31605.022506 eV Core-core repulsion = 27504.505215 eV Total energy + Delta-G solvation = -4100.517290 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.87084 -41.02176 -39.93907 -38.70483 -36.35045 -34.97733 -33.69087 -33.40366 -32.54620 -31.59009 -30.93559 -27.99978 -27.44904 -27.02341 -25.71061 -24.54476 -24.01567 -23.62731 -22.11658 -21.40644 -19.70305 -19.55557 -18.65748 -18.47251 -17.52376 -17.08213 -16.94144 -16.76073 -16.60854 -16.15708 -15.81962 -15.50859 -15.37380 -15.25878 -15.08428 -14.79822 -14.54623 -14.34788 -14.23121 -14.00718 -13.79180 -13.73298 -13.44855 -13.12205 -13.00076 -12.94489 -12.79923 -12.71996 -12.57444 -12.26965 -12.23137 -12.13546 -11.84147 -11.72368 -11.40306 -11.24697 -10.97056 -10.94101 -10.84692 -10.58259 -10.49672 -10.14376 -9.51825 -8.61747 -7.82278 -5.27064 0.18386 0.31979 1.41075 1.48615 1.48945 1.51052 1.58485 2.47783 2.54240 2.81216 3.26736 3.30089 3.51272 3.63135 3.82705 3.94042 3.96060 4.03525 4.03645 4.05265 4.09955 4.21889 4.34366 4.37218 4.51456 4.55271 4.61849 4.62963 4.73066 4.74818 4.79273 4.80753 4.99555 5.00630 5.05412 5.06127 5.12433 5.18622 5.26116 5.26626 5.32043 5.40477 5.45908 5.49866 5.53232 5.64521 5.73795 5.79304 6.13862 6.39361 6.42878 6.85757 7.04488 7.19646 7.90747 8.43318 9.22801 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011023 B = 0.003168 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2539.437978 B = 8837.635647 C =10684.329275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.077 3.923 3 H 0.107 0.893 4 O -0.299 6.299 5 C 0.289 3.711 6 C -0.202 4.202 7 C -0.035 4.035 8 C -0.202 4.202 9 C 0.122 3.878 10 N -0.566 5.566 11 C 0.515 3.485 12 O -0.569 6.569 13 N -0.705 5.705 14 C 0.142 3.858 15 C -0.090 4.090 16 C -0.120 4.120 17 C -0.095 4.095 18 C -0.123 4.123 19 C 0.136 3.864 20 N -0.604 5.604 21 C -0.254 4.254 22 H 0.064 0.936 23 C -0.043 4.043 24 N -0.931 5.931 25 Si 0.956 3.044 26 H -0.280 1.280 27 H -0.301 1.301 28 H -0.273 1.273 29 C 0.197 3.803 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.148 0.852 34 H 0.178 0.822 35 H 0.173 0.827 36 H 0.180 0.820 37 H 0.409 0.591 38 H 0.048 0.952 39 H 0.078 0.922 40 H 0.041 0.959 41 H 0.057 0.943 42 H 0.064 0.936 43 H 0.050 0.950 44 H 0.080 0.920 45 H 0.066 0.934 46 H 0.079 0.921 47 H 0.051 0.949 48 H 0.006 0.994 49 H 0.248 0.752 50 H 0.065 0.935 51 H -0.021 1.021 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.626 -7.993 13.507 16.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.017 3.983 3 H 0.125 0.875 4 O -0.206 6.206 5 C 0.112 3.888 6 C -0.222 4.222 7 C -0.060 4.060 8 C -0.222 4.222 9 C -0.033 4.033 10 N -0.290 5.290 11 C 0.301 3.699 12 O -0.448 6.448 13 N -0.358 5.358 14 C 0.019 3.981 15 C -0.092 4.092 16 C -0.177 4.177 17 C -0.133 4.133 18 C -0.161 4.161 19 C 0.010 3.990 20 N -0.327 5.327 21 C -0.385 4.385 22 H 0.082 0.918 23 C -0.238 4.238 24 N -0.577 5.577 25 Si 0.785 3.215 26 H -0.207 1.207 27 H -0.228 1.228 28 H -0.198 1.198 29 C 0.071 3.929 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.109 0.891 33 H 0.166 0.834 34 H 0.195 0.805 35 H 0.190 0.810 36 H 0.197 0.803 37 H 0.246 0.754 38 H 0.067 0.933 39 H 0.096 0.904 40 H 0.060 0.940 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.068 0.932 44 H 0.098 0.902 45 H 0.085 0.915 46 H 0.098 0.902 47 H 0.070 0.930 48 H 0.024 0.976 49 H 0.057 0.943 50 H 0.084 0.916 51 H -0.003 1.003 Dipole moment (debyes) X Y Z Total from point charges -4.413 -8.547 12.829 16.035 hybrid contribution 0.067 1.320 0.624 1.462 sum -4.346 -7.227 13.453 15.878 Atomic orbital electron populations 1.22090 0.90389 1.03799 1.04670 1.22021 0.97191 0.97159 0.81914 0.87515 1.86318 1.80630 1.35429 1.18233 1.20254 0.93273 0.88002 0.87307 1.21367 1.06344 1.03012 0.91494 1.21886 0.92794 0.93423 0.97927 1.22408 1.03003 0.96607 1.00166 1.22991 0.92688 1.00126 0.87478 1.67229 1.22656 1.04880 1.34251 1.20516 0.79351 0.84963 0.85061 1.90662 1.41887 1.25134 1.87147 1.45938 1.56935 1.27842 1.05039 1.21359 0.98294 0.95653 0.82844 1.21347 0.97504 0.96632 0.93737 1.21653 0.93197 1.01100 1.01726 1.21381 0.99963 0.98654 0.93330 1.21915 1.01082 0.95582 0.97554 1.21104 0.95660 0.93665 0.88527 1.44229 1.70031 1.17294 1.01099 1.19445 1.22205 0.92651 1.04171 0.91791 1.25630 0.98519 0.99836 0.99863 1.70193 1.30795 1.40410 1.16352 0.85433 0.78900 0.79258 0.77880 1.20656 1.22767 1.19847 1.20546 0.93840 0.89085 0.89443 0.91046 0.90377 0.89122 0.83418 0.80467 0.80996 0.80334 0.75409 0.93347 0.90418 0.94003 0.92400 0.91660 0.93168 0.90177 0.91543 0.90212 0.93000 0.97635 0.94285 0.91648 1.00302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.77 9.49 71.98 0.68 -3.08 16 2 C 0.08 2.41 2.90 29.85 0.09 2.50 16 3 H 0.11 3.49 6.98 -2.39 -0.02 3.47 16 4 O -0.30 -9.85 9.30 -71.02 -0.66 -10.51 16 5 C 0.29 8.25 7.45 84.79 0.63 8.88 16 6 C -0.20 -4.39 10.04 22.47 0.23 -4.17 16 7 C -0.04 -0.51 10.17 22.45 0.23 -0.28 16 8 C -0.20 -2.84 10.11 22.37 0.23 -2.61 16 9 C 0.12 2.40 11.18 84.63 0.95 3.34 16 10 N -0.57 -15.41 8.65 -308.95 -2.67 -18.09 16 11 C 0.52 18.31 7.18 87.66 0.63 18.94 16 12 O -0.57 -23.97 16.51 15.97 0.26 -23.71 16 13 N -0.70 -23.56 4.96 -463.07 -2.30 -25.85 16 14 C 0.14 4.73 4.57 86.38 0.39 5.12 16 15 C -0.09 -3.08 0.53 -52.10 -0.03 -3.11 16 16 C -0.12 -3.77 7.81 71.98 0.56 -3.21 16 17 C -0.10 -2.88 4.71 30.62 0.14 -2.74 16 18 C -0.12 -3.77 5.74 30.67 0.18 -3.59 16 19 C 0.14 5.42 6.52 86.36 0.56 5.99 16 20 N -0.60 -28.70 2.43 -699.10 -1.70 -30.41 16 21 C -0.25 -13.31 9.58 84.03 0.81 -12.51 16 22 H 0.06 3.30 7.89 -2.91 -0.02 3.28 16 23 C -0.04 -2.28 4.91 84.86 0.42 -1.87 16 24 N -0.93 -52.90 11.19 21.65 0.24 -52.65 16 25 Si 0.96 43.10 29.59 68.60 2.03 45.13 16 26 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 27 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 28 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 29 C 0.20 8.89 3.73 86.37 0.32 9.21 16 30 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.09 2.03 7.93 -2.39 -0.02 2.01 16 33 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 34 H 0.18 1.19 8.06 -2.91 -0.02 1.17 16 35 H 0.17 1.15 8.06 -2.91 -0.02 1.13 16 36 H 0.18 2.56 8.06 -2.91 -0.02 2.54 16 37 H 0.41 13.49 6.01 -92.71 -0.56 12.93 16 38 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.04 1.32 6.86 -2.39 -0.02 1.31 16 41 H 0.06 2.02 5.97 -2.39 -0.01 2.00 16 42 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.07 2.03 6.33 -2.39 -0.02 2.02 16 46 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 47 H 0.05 2.03 7.93 -2.39 -0.02 2.01 16 48 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 49 H 0.25 13.81 8.31 -92.70 -0.77 13.04 16 50 H 0.07 3.24 4.94 -2.39 -0.01 3.23 16 51 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 Total: -1.00 -70.87 403.36 2.59 -68.28 By element: Atomic # 1 Polarization: 30.62 SS G_CDS: 0.37 Total: 30.99 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: 7.01 Total: 16.82 kcal Atomic # 7 Polarization: -120.57 SS G_CDS: -6.43 Total: -127.00 kcal Atomic # 8 Polarization: -33.82 SS G_CDS: -0.40 Total: -34.22 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -70.87 2.59 -68.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484175499.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.753 kcal (2) G-P(sol) polarization free energy of solvation -70.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds