Wall clock time and date at job start Wed Apr 1 2020 04:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46630 * 2 1 4 4 O 1.42895 * 109.47505 * 239.99610 * 2 1 3 5 5 C 1.35674 * 116.99808 * 89.99787 * 4 2 1 6 6 C 1.38926 * 119.68414 * 180.02562 * 5 4 2 7 7 C 1.38381 * 119.11129 * 180.02562 * 6 5 4 8 8 C 1.38831 * 118.48429 * 359.97438 * 7 6 5 9 9 C 1.38044 * 119.29278 * 0.02562 * 8 7 6 10 10 N 1.31964 * 120.83239 * 359.97438 * 9 8 7 11 11 C 1.50704 * 109.46984 * 119.99246 * 2 1 3 12 12 O 1.21284 * 119.99682 * 120.00196 * 11 2 1 13 13 N 1.34770 * 120.00423 * 300.00710 * 11 2 1 14 14 C 1.46500 * 120.00035 * 180.02562 * 13 11 2 15 15 C 1.53001 * 109.46864 * 179.97438 * 14 13 11 16 16 C 1.53002 * 109.50055 * 59.99643 * 15 14 13 17 17 C 1.53044 * 109.49568 * 180.02562 * 15 14 13 18 18 C 1.53031 * 109.53820 * 181.28233 * 17 15 14 19 19 C 1.53197 * 109.33922 * 298.68254 * 18 17 15 20 20 N 1.46917 * 108.77700 * 54.61966 * 19 18 17 21 21 C 1.36944 * 120.63285 * 126.41037 * 20 19 18 22 22 H 1.07996 * 119.99813 * 332.56817 * 21 20 19 23 23 C 1.38810 * 120.00085 * 152.55855 * 21 20 19 24 24 N 1.31620 * 119.99887 * 159.35361 * 23 21 20 25 25 Si 1.86801 * 120.00094 * 339.35853 * 23 21 20 26 26 H 1.48498 * 109.47333 * 92.94272 * 25 23 21 27 27 H 1.48493 * 109.47188 * 212.94693 * 25 23 21 28 28 H 1.48505 * 109.46880 * 332.94362 * 25 23 21 29 29 C 1.46925 * 118.73825 * 306.39392 * 20 19 18 30 30 H 1.08996 * 109.47063 * 60.00418 * 1 2 3 31 31 H 1.09003 * 109.46630 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47312 * 300.00017 * 1 2 3 33 33 H 1.07996 * 120.44300 * 359.72733 * 6 5 4 34 34 H 1.08000 * 120.75810 * 179.97438 * 7 6 5 35 35 H 1.08000 * 120.35176 * 179.97438 * 8 7 6 36 36 H 1.07995 * 119.58641 * 179.97438 * 9 8 7 37 37 H 0.97003 * 119.99922 * 359.97438 * 13 11 2 38 38 H 1.09002 * 109.47027 * 299.99404 * 14 13 11 39 39 H 1.09000 * 109.47397 * 59.99758 * 14 13 11 40 40 H 1.08999 * 109.46537 * 60.00045 * 16 15 14 41 41 H 1.09001 * 109.47040 * 179.97438 * 16 15 14 42 42 H 1.08995 * 109.46961 * 300.00410 * 16 15 14 43 43 H 1.09003 * 109.45880 * 301.33443 * 17 15 14 44 44 H 1.09000 * 109.45994 * 61.29123 * 17 15 14 45 45 H 1.09008 * 109.49888 * 178.71706 * 18 17 15 46 46 H 1.08994 * 109.47509 * 58.63534 * 18 17 15 47 47 H 1.09002 * 109.58492 * 294.82801 * 19 18 17 48 48 H 1.08999 * 109.58345 * 174.41032 * 19 18 17 49 49 H 0.97003 * 119.99682 * 179.97438 * 24 23 21 50 50 H 1.08996 * 109.58679 * 293.81821 * 29 20 19 51 51 H 1.09004 * 109.58673 * 173.39578 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.2117 0.0828 -2.2740 6 6 2.6739 -0.5151 -3.4398 7 6 2.8797 0.2678 -4.5621 8 6 2.6141 1.6279 -4.4784 9 6 2.1567 2.1547 -3.2873 10 7 1.9700 1.3824 -2.2336 11 6 2.0323 -0.7103 1.2306 12 8 2.7296 -1.6964 1.1194 13 7 1.7067 -0.2498 2.4546 14 6 2.1955 -0.9400 3.6508 15 6 1.6858 -0.2184 4.9000 16 6 0.1557 -0.2181 4.9011 17 6 2.1966 -0.9386 6.1501 18 6 1.6611 -0.2365 7.3999 19 6 2.1732 1.2071 7.4296 20 7 1.8100 1.8637 6.1665 21 6 1.1232 3.0484 6.1682 22 1 0.4715 3.2935 6.9938 23 6 1.2647 3.9343 5.1089 24 7 0.3444 4.8492 4.8888 25 14 2.7610 3.8278 3.9958 26 1 2.4487 2.9661 2.8275 27 1 3.1250 5.1881 3.5244 28 1 3.8991 3.2446 4.7509 29 6 2.1981 1.2253 4.9013 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 2.8745 -1.5759 -3.4682 34 1 3.2387 -0.1693 -5.4821 35 1 2.7645 2.2671 -5.3359 36 1 1.9489 3.2121 -3.2167 37 1 1.1492 0.5390 2.5436 38 1 1.8326 -1.9678 3.6511 39 1 3.2855 -0.9395 3.6507 40 1 -0.2077 -1.2458 4.9017 41 1 -0.2069 0.2956 5.7914 42 1 -0.2081 0.2954 4.0112 43 1 1.8533 -1.9731 6.1389 44 1 3.2863 -0.9179 6.1612 45 1 2.0067 -0.7634 8.2895 46 1 0.5714 -0.2355 7.3775 47 1 3.2572 1.2080 7.5435 48 1 1.7157 1.7399 8.2632 49 1 0.4435 5.4685 4.1488 50 1 3.2842 1.2277 4.8089 51 1 1.7571 1.7703 4.0667 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484175511.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:58 Heat of formation + Delta-G solvation = -13.685036 kcal Electronic energy + Delta-G solvation = -31762.431530 eV Core-core repulsion = 27662.991322 eV Total energy + Delta-G solvation = -4099.440208 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.96119 -39.93869 -38.80630 -37.69009 -34.98385 -33.40994 -32.75216 -32.41014 -31.31623 -30.63116 -30.10105 -26.78393 -26.12816 -25.36927 -24.78303 -23.78235 -23.03961 -22.39007 -20.60353 -20.24120 -18.71804 -18.46903 -17.65884 -16.78653 -16.57082 -16.16011 -15.96605 -15.75824 -15.27343 -15.01766 -14.74643 -14.37573 -14.16752 -13.94991 -13.63137 -13.57806 -13.57485 -13.33730 -13.32500 -12.94800 -12.53251 -12.44762 -12.21124 -12.18166 -12.03381 -11.90337 -11.68061 -11.25581 -11.22324 -11.07126 -10.77276 -10.56796 -10.41159 -10.20347 -10.06998 -9.93440 -9.82042 -9.68107 -9.63397 -9.47010 -8.93882 -8.72387 -8.65347 -7.00357 -6.00283 -3.35413 0.91750 1.02464 2.46360 2.64583 3.22762 3.44573 3.47142 3.50615 3.56979 4.05306 4.46302 4.58807 4.62878 4.76581 4.78767 4.83106 4.87519 4.97781 5.04410 5.07650 5.19011 5.20194 5.38571 5.45097 5.50267 5.56916 5.58349 5.71061 5.72818 5.77251 5.92160 5.93035 5.95068 5.96019 6.01552 6.17796 6.22598 6.25208 6.31646 6.35726 6.47152 6.57508 6.58674 6.60904 6.70310 6.80036 7.00249 7.02272 7.54146 7.63780 7.91230 8.23957 8.28102 8.89418 9.67028 10.05700 11.15559 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012916 B = 0.003208 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.299351 B = 8725.393796 C =10153.521402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.070 3.930 3 H 0.116 0.884 4 O -0.276 6.276 5 C 0.325 3.675 6 C -0.190 4.190 7 C -0.041 4.041 8 C -0.216 4.216 9 C 0.142 3.858 10 N -0.541 5.541 11 C 0.516 3.484 12 O -0.529 6.529 13 N -0.717 5.717 14 C 0.133 3.867 15 C -0.093 4.093 16 C -0.129 4.129 17 C -0.096 4.096 18 C -0.137 4.137 19 C 0.146 3.854 20 N -0.602 5.602 21 C -0.256 4.256 22 H 0.086 0.914 23 C 0.025 3.975 24 N -0.906 5.906 25 Si 0.877 3.123 26 H -0.290 1.290 27 H -0.303 1.303 28 H -0.272 1.272 29 C 0.139 3.861 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.142 0.858 34 H 0.141 0.859 35 H 0.137 0.863 36 H 0.161 0.839 37 H 0.406 0.594 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.042 0.958 41 H 0.077 0.923 42 H 0.047 0.953 43 H 0.054 0.946 44 H 0.057 0.943 45 H 0.054 0.946 46 H 0.067 0.933 47 H 0.021 0.979 48 H 0.062 0.938 49 H 0.262 0.738 50 H 0.025 0.975 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.706 -10.188 -13.708 17.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.010 3.990 3 H 0.133 0.867 4 O -0.182 6.182 5 C 0.146 3.854 6 C -0.211 4.211 7 C -0.067 4.067 8 C -0.236 4.236 9 C -0.013 4.013 10 N -0.265 5.265 11 C 0.301 3.699 12 O -0.406 6.406 13 N -0.371 5.371 14 C 0.009 3.991 15 C -0.095 4.095 16 C -0.186 4.186 17 C -0.134 4.134 18 C -0.176 4.176 19 C 0.020 3.980 20 N -0.325 5.325 21 C -0.384 4.384 22 H 0.104 0.896 23 C -0.174 4.174 24 N -0.549 5.549 25 Si 0.707 3.293 26 H -0.218 1.218 27 H -0.231 1.231 28 H -0.197 1.197 29 C 0.013 3.987 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.160 0.840 34 H 0.158 0.842 35 H 0.155 0.845 36 H 0.178 0.822 37 H 0.243 0.757 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.061 0.939 41 H 0.096 0.904 42 H 0.066 0.934 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.085 0.915 47 H 0.039 0.961 48 H 0.081 0.919 49 H 0.072 0.928 50 H 0.043 0.957 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.883 -10.665 -13.000 16.920 hybrid contribution 0.890 0.363 -1.440 1.731 sum 2.773 -10.302 -14.440 17.953 Atomic orbital electron populations 1.22171 0.92165 1.03582 1.04204 1.22122 0.95985 0.98213 0.82671 0.86667 1.86360 1.79775 1.34415 1.17606 1.19934 0.90993 0.87433 0.87064 1.21084 1.06345 1.02234 0.91414 1.21413 0.94195 0.93447 0.97614 1.21986 1.05452 0.96217 0.99992 1.22475 0.92309 0.99326 0.87235 1.67303 1.21738 1.04738 1.32691 1.20126 0.80707 0.84781 0.84317 1.90703 1.37342 1.25828 1.86682 1.46015 1.53624 1.32393 1.05084 1.21482 0.98987 0.95737 0.82874 1.21365 0.97229 0.97872 0.93080 1.21749 0.93563 1.00105 1.03172 1.21359 1.00027 0.97915 0.94096 1.22045 1.01453 0.97834 0.96219 1.20960 0.96587 0.91188 0.89231 1.44301 1.65966 1.23000 0.99263 1.18919 1.18743 0.92802 1.07978 0.89606 1.25254 0.97633 0.96273 0.98218 1.69832 1.32743 1.21414 1.30923 0.87072 0.86038 0.75692 0.80449 1.21773 1.23135 1.19720 1.21373 0.96621 0.90364 0.90332 0.90740 0.91187 0.89960 0.83990 0.84161 0.84535 0.82228 0.75736 0.91383 0.91635 0.93922 0.90391 0.93426 0.92688 0.92405 0.92687 0.91463 0.96080 0.91920 0.92772 0.95735 0.91223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 9.43 37.16 0.35 -1.66 16 2 C 0.07 1.04 2.91 -27.88 -0.08 0.96 16 3 H 0.12 1.76 6.98 -51.93 -0.36 1.40 16 4 O -0.28 -4.25 9.29 -38.63 -0.36 -4.61 16 5 C 0.32 4.42 7.45 -17.12 -0.13 4.29 16 6 C -0.19 -2.05 10.04 -39.27 -0.39 -2.44 16 7 C -0.04 -0.34 10.17 -39.31 -0.40 -0.74 16 8 C -0.22 -1.75 10.11 -39.43 -0.40 -2.15 16 9 C 0.14 1.44 11.18 -17.57 -0.20 1.24 16 10 N -0.54 -7.16 8.65 -13.33 -0.12 -7.28 16 11 C 0.52 8.64 7.23 -10.99 -0.08 8.56 16 12 O -0.53 -10.43 16.50 -14.36 -0.24 -10.67 16 13 N -0.72 -11.39 4.89 -60.29 -0.29 -11.68 16 14 C 0.13 2.07 4.57 -4.04 -0.02 2.05 16 15 C -0.09 -1.52 0.53 -154.38 -0.08 -1.60 16 16 C -0.13 -2.06 7.81 37.16 0.29 -1.77 16 17 C -0.10 -1.41 4.71 -26.69 -0.13 -1.53 16 18 C -0.14 -2.08 5.74 -26.61 -0.15 -2.23 16 19 C 0.15 2.73 6.52 -3.71 -0.02 2.71 16 20 N -0.60 -13.44 2.21 -172.32 -0.38 -13.82 16 21 C -0.26 -6.78 10.03 -15.06 -0.15 -6.93 16 22 H 0.09 2.44 8.06 -52.49 -0.42 2.02 16 23 C 0.03 0.69 5.23 -17.43 -0.09 0.60 16 24 N -0.91 -26.64 13.97 55.49 0.78 -25.86 16 25 Si 0.88 21.79 24.35 -169.99 -4.14 17.65 16 26 H -0.29 -6.77 6.62 56.52 0.37 -6.39 16 27 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 28 H -0.27 -6.81 6.64 56.52 0.38 -6.44 16 29 C 0.14 2.85 2.62 -3.71 -0.01 2.84 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.08 0.94 7.56 -51.93 -0.39 0.55 16 33 H 0.14 1.34 8.06 -52.49 -0.42 0.91 16 34 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 35 H 0.14 0.72 8.06 -52.49 -0.42 0.29 16 36 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 37 H 0.41 6.38 5.64 -40.82 -0.23 6.15 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.08 1.41 5.97 -51.93 -0.31 1.10 16 42 H 0.05 0.77 6.86 -51.93 -0.36 0.41 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 46 H 0.07 1.06 6.33 -51.93 -0.33 0.73 16 47 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 49 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 50 H 0.02 0.53 7.07 -51.93 -0.37 0.16 16 51 H 0.07 1.54 3.41 -51.93 -0.18 1.36 16 LS Contribution 396.15 15.07 5.97 5.97 Total: -1.00 -32.64 396.15 -8.52 -41.15 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -8.05 Total: 6.95 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: -1.69 Total: 2.19 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: -0.02 Total: -58.64 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.60 Total: -15.28 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.14 Total: 17.65 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.64 -8.52 -41.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484175511.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.467 kcal (2) G-P(sol) polarization free energy of solvation -32.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds