Wall clock time and date at job start Wed Apr 1 2020 04:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46630 * 2 1 4 4 O 1.42895 * 109.47505 * 239.99610 * 2 1 3 5 5 C 1.35674 * 116.99808 * 89.99787 * 4 2 1 6 6 C 1.38926 * 119.68414 * 180.02562 * 5 4 2 7 7 C 1.38381 * 119.11129 * 180.02562 * 6 5 4 8 8 C 1.38831 * 118.48429 * 359.97438 * 7 6 5 9 9 C 1.38044 * 119.29278 * 0.02562 * 8 7 6 10 10 N 1.31964 * 120.83239 * 359.97438 * 9 8 7 11 11 C 1.50704 * 109.46984 * 119.99246 * 2 1 3 12 12 O 1.21284 * 119.99682 * 120.00196 * 11 2 1 13 13 N 1.34770 * 120.00423 * 300.00710 * 11 2 1 14 14 C 1.46500 * 120.00035 * 180.02562 * 13 11 2 15 15 C 1.53001 * 109.46864 * 179.97438 * 14 13 11 16 16 C 1.53002 * 109.50055 * 59.99643 * 15 14 13 17 17 C 1.53044 * 109.49568 * 180.02562 * 15 14 13 18 18 C 1.53031 * 109.53820 * 181.28233 * 17 15 14 19 19 C 1.53197 * 109.33922 * 298.68254 * 18 17 15 20 20 N 1.46917 * 108.77700 * 54.61966 * 19 18 17 21 21 C 1.36944 * 120.63285 * 126.41037 * 20 19 18 22 22 H 1.07996 * 119.99813 * 332.56817 * 21 20 19 23 23 C 1.38810 * 120.00085 * 152.55855 * 21 20 19 24 24 N 1.31620 * 119.99887 * 159.35361 * 23 21 20 25 25 Si 1.86801 * 120.00094 * 339.35853 * 23 21 20 26 26 H 1.48498 * 109.47333 * 92.94272 * 25 23 21 27 27 H 1.48493 * 109.47188 * 212.94693 * 25 23 21 28 28 H 1.48505 * 109.46880 * 332.94362 * 25 23 21 29 29 C 1.46925 * 118.73825 * 306.39392 * 20 19 18 30 30 H 1.08996 * 109.47063 * 60.00418 * 1 2 3 31 31 H 1.09003 * 109.46630 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47312 * 300.00017 * 1 2 3 33 33 H 1.07996 * 120.44300 * 359.72733 * 6 5 4 34 34 H 1.08000 * 120.75810 * 179.97438 * 7 6 5 35 35 H 1.08000 * 120.35176 * 179.97438 * 8 7 6 36 36 H 1.07995 * 119.58641 * 179.97438 * 9 8 7 37 37 H 0.97003 * 119.99922 * 359.97438 * 13 11 2 38 38 H 1.09002 * 109.47027 * 299.99404 * 14 13 11 39 39 H 1.09000 * 109.47397 * 59.99758 * 14 13 11 40 40 H 1.08999 * 109.46537 * 60.00045 * 16 15 14 41 41 H 1.09001 * 109.47040 * 179.97438 * 16 15 14 42 42 H 1.08995 * 109.46961 * 300.00410 * 16 15 14 43 43 H 1.09003 * 109.45880 * 301.33443 * 17 15 14 44 44 H 1.09000 * 109.45994 * 61.29123 * 17 15 14 45 45 H 1.09008 * 109.49888 * 178.71706 * 18 17 15 46 46 H 1.08994 * 109.47509 * 58.63534 * 18 17 15 47 47 H 1.09002 * 109.58492 * 294.82801 * 19 18 17 48 48 H 1.08999 * 109.58345 * 174.41032 * 19 18 17 49 49 H 0.97003 * 119.99682 * 179.97438 * 24 23 21 50 50 H 1.08996 * 109.58679 * 293.81821 * 29 20 19 51 51 H 1.09004 * 109.58673 * 173.39578 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.2117 0.0828 -2.2740 6 6 2.6739 -0.5151 -3.4398 7 6 2.8797 0.2678 -4.5621 8 6 2.6141 1.6279 -4.4784 9 6 2.1567 2.1547 -3.2873 10 7 1.9700 1.3824 -2.2336 11 6 2.0323 -0.7103 1.2306 12 8 2.7296 -1.6964 1.1194 13 7 1.7067 -0.2498 2.4546 14 6 2.1955 -0.9400 3.6508 15 6 1.6858 -0.2184 4.9000 16 6 0.1557 -0.2181 4.9011 17 6 2.1966 -0.9386 6.1501 18 6 1.6611 -0.2365 7.3999 19 6 2.1732 1.2071 7.4296 20 7 1.8100 1.8637 6.1665 21 6 1.1232 3.0484 6.1682 22 1 0.4715 3.2935 6.9938 23 6 1.2647 3.9343 5.1089 24 7 0.3444 4.8492 4.8888 25 14 2.7610 3.8278 3.9958 26 1 2.4487 2.9661 2.8275 27 1 3.1250 5.1881 3.5244 28 1 3.8991 3.2446 4.7509 29 6 2.1981 1.2253 4.9013 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 2.8745 -1.5759 -3.4682 34 1 3.2387 -0.1693 -5.4821 35 1 2.7645 2.2671 -5.3359 36 1 1.9489 3.2121 -3.2167 37 1 1.1492 0.5390 2.5436 38 1 1.8326 -1.9678 3.6511 39 1 3.2855 -0.9395 3.6507 40 1 -0.2077 -1.2458 4.9017 41 1 -0.2069 0.2956 5.7914 42 1 -0.2081 0.2954 4.0112 43 1 1.8533 -1.9731 6.1389 44 1 3.2863 -0.9179 6.1612 45 1 2.0067 -0.7634 8.2895 46 1 0.5714 -0.2355 7.3775 47 1 3.2572 1.2080 7.5435 48 1 1.7157 1.7399 8.2632 49 1 0.4435 5.4685 4.1488 50 1 3.2842 1.2277 4.8089 51 1 1.7571 1.7703 4.0667 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484175511.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:57 Heat of formation + Delta-G solvation = -35.067147 kcal Electronic energy + Delta-G solvation = -31763.358728 eV Core-core repulsion = 27662.991322 eV Total energy + Delta-G solvation = -4100.367406 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.93009 -41.14147 -40.12117 -38.76728 -36.48928 -35.03029 -33.78107 -33.45313 -32.81413 -32.13649 -30.97791 -28.11760 -27.51583 -27.11615 -25.82380 -24.61592 -24.24152 -23.68238 -22.07911 -21.49240 -19.97835 -19.64122 -18.84108 -18.58281 -17.58782 -17.29339 -17.05151 -16.81066 -16.73767 -16.29292 -15.93857 -15.59798 -15.49416 -15.30741 -15.19359 -15.00124 -14.79330 -14.49236 -14.28884 -14.03290 -13.96812 -13.77492 -13.57350 -13.49937 -13.22798 -12.98700 -12.88109 -12.82766 -12.60858 -12.34870 -12.28512 -12.12248 -11.96195 -11.62936 -11.55832 -11.34152 -11.08806 -10.99439 -10.91220 -10.63115 -10.62059 -10.24860 -9.55148 -8.88317 -8.15308 -5.44762 0.15425 0.28941 1.22509 1.32799 1.38630 1.42339 1.44597 2.37878 2.40425 2.78040 3.05178 3.22510 3.32256 3.45167 3.75409 3.76523 3.85102 3.86890 3.89840 4.00977 4.06935 4.19020 4.30290 4.32285 4.36129 4.44480 4.54201 4.58446 4.58902 4.67778 4.71208 4.76570 4.78107 4.90290 4.96929 4.97659 5.03293 5.06086 5.13102 5.15664 5.22153 5.24251 5.31092 5.37452 5.44885 5.48812 5.68583 5.89614 6.08746 6.15510 6.27898 6.81833 6.93963 6.94987 7.64778 8.06397 9.04559 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012916 B = 0.003208 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.299351 B = 8725.393796 C =10153.521402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.074 3.926 3 H 0.106 0.894 4 O -0.297 6.297 5 C 0.289 3.711 6 C -0.200 4.200 7 C -0.035 4.035 8 C -0.201 4.201 9 C 0.122 3.878 10 N -0.569 5.569 11 C 0.517 3.483 12 O -0.562 6.562 13 N -0.714 5.714 14 C 0.136 3.864 15 C -0.082 4.082 16 C -0.124 4.124 17 C -0.095 4.095 18 C -0.126 4.126 19 C 0.138 3.862 20 N -0.614 5.614 21 C -0.237 4.237 22 H 0.056 0.944 23 C -0.023 4.023 24 N -0.951 5.951 25 Si 0.929 3.071 26 H -0.272 1.272 27 H -0.316 1.316 28 H -0.274 1.274 29 C 0.137 3.863 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.149 0.851 34 H 0.179 0.821 35 H 0.173 0.827 36 H 0.179 0.821 37 H 0.407 0.593 38 H 0.085 0.915 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.055 0.945 42 H 0.039 0.961 43 H 0.085 0.915 44 H 0.062 0.938 45 H 0.086 0.914 46 H 0.062 0.938 47 H 0.028 0.972 48 H 0.054 0.946 49 H 0.260 0.740 50 H 0.017 0.983 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.505 -12.118 -15.243 19.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.014 3.986 3 H 0.124 0.876 4 O -0.204 6.204 5 C 0.111 3.889 6 C -0.220 4.220 7 C -0.060 4.060 8 C -0.221 4.221 9 C -0.033 4.033 10 N -0.293 5.293 11 C 0.303 3.697 12 O -0.441 6.441 13 N -0.367 5.367 14 C 0.013 3.987 15 C -0.084 4.084 16 C -0.181 4.181 17 C -0.132 4.132 18 C -0.165 4.165 19 C 0.013 3.987 20 N -0.338 5.338 21 C -0.367 4.367 22 H 0.074 0.926 23 C -0.218 4.218 24 N -0.597 5.597 25 Si 0.759 3.241 26 H -0.198 1.198 27 H -0.245 1.245 28 H -0.199 1.199 29 C 0.012 3.988 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.167 0.833 34 H 0.196 0.804 35 H 0.190 0.810 36 H 0.196 0.804 37 H 0.243 0.757 38 H 0.103 0.897 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.074 0.926 42 H 0.058 0.942 43 H 0.104 0.896 44 H 0.081 0.919 45 H 0.105 0.895 46 H 0.081 0.919 47 H 0.046 0.954 48 H 0.073 0.927 49 H 0.070 0.930 50 H 0.035 0.965 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.694 -12.626 -14.525 19.434 hybrid contribution 0.657 0.999 -0.958 1.532 sum 3.351 -11.627 -15.483 19.651 Atomic orbital electron populations 1.22117 0.90482 1.03985 1.04634 1.22040 0.97192 0.97181 0.82190 0.87642 1.86312 1.80619 1.35317 1.18138 1.20254 0.93343 0.87974 0.87316 1.21371 1.06231 1.03043 0.91385 1.21897 0.92746 0.93380 0.97958 1.22410 1.02921 0.96643 1.00114 1.22983 0.92711 1.00122 0.87516 1.67227 1.22690 1.04989 1.34397 1.20458 0.79994 0.84321 0.84936 1.90674 1.38866 1.27362 1.87153 1.46054 1.53261 1.32247 1.05173 1.21491 0.98741 0.96339 0.82169 1.21226 0.97311 0.95226 0.94669 1.21693 0.93237 1.01449 1.01742 1.21401 1.00366 0.99110 0.92371 1.21938 1.01095 0.95383 0.98063 1.21176 0.97012 0.93222 0.87282 1.44414 1.65817 1.22170 1.01368 1.18849 1.17431 0.94069 1.06353 0.92577 1.25693 0.99539 0.96569 1.00025 1.69937 1.34498 1.23018 1.32244 0.86210 0.83075 0.75050 0.79727 1.19834 1.24491 1.19913 1.21353 0.95982 0.92750 0.88741 0.90388 0.90734 0.89358 0.83298 0.80409 0.80987 0.80383 0.75655 0.89694 0.92089 0.91124 0.92574 0.94155 0.89626 0.91893 0.89521 0.91941 0.95417 0.92697 0.93039 0.96483 0.93157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.78 9.43 71.98 0.68 -3.10 16 2 C 0.07 2.23 2.91 29.85 0.09 2.31 16 3 H 0.11 3.33 6.98 -2.39 -0.02 3.31 16 4 O -0.30 -9.34 9.29 -70.88 -0.66 -10.00 16 5 C 0.29 7.90 7.45 84.79 0.63 8.53 16 6 C -0.20 -4.11 10.04 22.47 0.23 -3.88 16 7 C -0.03 -0.47 10.17 22.45 0.23 -0.24 16 8 C -0.20 -2.66 10.11 22.37 0.23 -2.43 16 9 C 0.12 2.29 11.18 84.63 0.95 3.24 16 10 N -0.57 -15.02 8.65 -308.95 -2.67 -17.69 16 11 C 0.52 17.22 7.23 87.66 0.63 17.86 16 12 O -0.56 -22.09 16.50 16.00 0.26 -21.82 16 13 N -0.71 -22.09 4.89 -463.06 -2.26 -24.35 16 14 C 0.14 3.97 4.57 86.38 0.39 4.37 16 15 C -0.08 -2.52 0.53 -52.10 -0.03 -2.55 16 16 C -0.12 -3.76 7.81 71.98 0.56 -3.20 16 17 C -0.09 -2.45 4.71 30.62 0.14 -2.30 16 18 C -0.13 -3.48 5.74 30.67 0.18 -3.30 16 19 C 0.14 4.98 6.52 86.37 0.56 5.55 16 20 N -0.61 -27.26 2.21 -699.11 -1.54 -28.80 16 21 C -0.24 -12.84 10.03 84.03 0.84 -12.00 16 22 H 0.06 3.33 8.06 -2.91 -0.02 3.30 16 23 C -0.02 -1.31 5.23 84.86 0.44 -0.86 16 24 N -0.95 -57.69 13.97 21.65 0.30 -57.38 16 25 Si 0.93 45.98 24.35 68.60 1.67 47.65 16 26 H -0.27 -12.45 6.62 99.48 0.66 -11.79 16 27 H -0.32 -16.16 7.11 99.48 0.71 -15.45 16 28 H -0.27 -13.47 6.64 99.48 0.66 -12.81 16 29 C 0.14 5.49 2.62 86.36 0.23 5.72 16 30 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.09 2.00 7.56 -2.39 -0.02 1.98 16 33 H 0.15 2.70 8.06 -2.91 -0.02 2.67 16 34 H 0.18 1.02 8.06 -2.91 -0.02 1.00 16 35 H 0.17 1.02 8.06 -2.91 -0.02 1.00 16 36 H 0.18 2.45 8.06 -2.91 -0.02 2.42 16 37 H 0.41 12.59 5.64 -92.71 -0.52 12.07 16 38 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.07 1.74 8.14 -2.39 -0.02 1.73 16 41 H 0.06 1.96 5.97 -2.39 -0.01 1.95 16 42 H 0.04 1.26 6.86 -2.39 -0.02 1.24 16 43 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 46 H 0.06 1.81 6.33 -2.39 -0.02 1.80 16 47 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.05 2.04 7.93 -2.39 -0.02 2.02 16 49 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 50 H 0.02 0.72 7.07 -2.39 -0.02 0.70 16 51 H 0.05 2.21 3.41 -2.38 -0.01 2.20 16 Total: -1.00 -73.59 396.15 2.40 -71.19 By element: Atomic # 1 Polarization: 27.19 SS G_CDS: 0.32 Total: 27.51 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: 6.98 Total: 13.71 kcal Atomic # 7 Polarization: -122.05 SS G_CDS: -6.18 Total: -128.23 kcal Atomic # 8 Polarization: -31.43 SS G_CDS: -0.39 Total: -31.82 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.67 Total: 47.65 kcal Total: -73.59 2.40 -71.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484175511.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.124 kcal (2) G-P(sol) polarization free energy of solvation -73.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds