Wall clock time and date at job start Wed Apr 1 2020 04:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47311 * 2 1 4 4 O 1.42901 * 109.47080 * 240.00246 * 2 1 3 5 5 C 1.35677 * 117.00100 * 90.00180 * 4 2 1 6 6 C 1.38912 * 119.68248 * 179.97438 * 5 4 2 7 7 C 1.38383 * 119.11119 * 179.97438 * 6 5 4 8 8 C 1.38832 * 118.48507 * 0.02562 * 7 6 5 9 9 C 1.38053 * 119.28600 * 359.97438 * 8 7 6 10 10 N 1.31963 * 120.83414 * 359.74565 * 9 8 7 11 11 C 1.50705 * 109.46895 * 120.00024 * 2 1 3 12 12 O 1.21283 * 119.99565 * 115.00137 * 11 2 1 13 13 N 1.34775 * 120.00152 * 294.99660 * 11 2 1 14 14 C 1.46492 * 119.99822 * 179.97438 * 13 11 2 15 15 C 1.53003 * 109.47077 * 180.02562 * 14 13 11 16 16 C 1.53002 * 109.49911 * 300.00320 * 15 14 13 17 17 C 1.53040 * 109.52495 * 179.97438 * 15 14 13 18 18 C 1.53044 * 109.53509 * 178.66806 * 17 15 14 19 19 C 1.53189 * 109.31317 * 61.36895 * 18 17 15 20 20 N 1.46924 * 108.77504 * 305.36118 * 19 18 17 21 21 C 1.36940 * 120.63292 * 233.63310 * 20 19 18 22 22 H 1.07997 * 119.99823 * 27.66188 * 21 20 19 23 23 C 1.38813 * 119.99742 * 207.66649 * 21 20 19 24 24 N 1.31615 * 120.00330 * 17.37064 * 23 21 20 25 25 Si 1.86806 * 119.99544 * 197.36955 * 23 21 20 26 26 H 1.48502 * 109.47053 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.46903 * 120.00021 * 25 23 21 28 28 H 1.48493 * 109.47004 * 239.99957 * 25 23 21 29 29 C 1.46928 * 118.74088 * 53.60811 * 20 19 18 30 30 H 1.09000 * 109.47030 * 59.99612 * 1 2 3 31 31 H 1.09002 * 109.47311 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47098 * 299.99904 * 1 2 3 33 33 H 1.08000 * 120.44983 * 359.95762 * 6 5 4 34 34 H 1.07999 * 120.76038 * 180.02562 * 7 6 5 35 35 H 1.07999 * 120.35583 * 180.02562 * 8 7 6 36 36 H 1.08001 * 119.57947 * 179.97438 * 9 8 7 37 37 H 0.97004 * 119.99714 * 0.02562 * 13 11 2 38 38 H 1.09007 * 109.47102 * 60.01200 * 14 13 11 39 39 H 1.08993 * 109.47910 * 300.00875 * 14 13 11 40 40 H 1.08994 * 109.47444 * 180.02562 * 16 15 14 41 41 H 1.08997 * 109.47307 * 300.06297 * 16 15 14 42 42 H 1.09005 * 109.46788 * 60.06106 * 16 15 14 43 43 H 1.09001 * 109.46252 * 298.68616 * 17 15 14 44 44 H 1.08999 * 109.45752 * 58.65159 * 17 15 14 45 45 H 1.08991 * 109.49969 * 301.41307 * 18 17 15 46 46 H 1.09003 * 109.49408 * 181.31612 * 18 17 15 47 47 H 1.09001 * 109.59051 * 185.57587 * 19 18 17 48 48 H 1.09004 * 109.70844 * 65.21801 * 19 18 17 49 49 H 0.97003 * 120.00110 * 180.02562 * 24 23 21 50 50 H 1.08996 * 109.58974 * 186.60516 * 29 20 19 51 51 H 1.09007 * 109.70025 * 66.24759 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.2117 0.0830 -2.2742 6 6 2.6747 -0.5147 -3.4395 7 6 2.8795 0.2681 -4.5621 8 6 2.6131 1.6280 -4.4787 9 6 2.1548 2.1546 -3.2876 10 7 1.9639 1.3815 -2.2353 11 6 2.0323 -0.7104 1.2305 12 8 2.6529 -1.7467 1.1215 13 7 1.7919 -0.1942 2.4520 14 6 2.2797 -0.8851 3.6481 15 6 1.8745 -0.0952 4.8943 16 6 2.4844 1.3066 4.8310 17 6 2.3830 -0.8163 6.1447 18 6 2.0067 -0.0094 7.3895 19 6 0.4814 0.0994 7.4808 20 7 -0.0289 0.6591 6.2218 21 6 -0.8399 1.7625 6.2268 22 1 -0.7666 2.4829 7.0281 23 6 -1.7562 1.9551 5.2020 24 7 -2.0952 0.9486 4.4246 25 14 -2.5080 3.6428 4.9262 26 1 -1.9658 4.5958 5.9278 27 1 -2.1729 4.1165 3.5593 28 1 -3.9832 3.5574 5.0728 29 6 0.3477 0.0127 4.9573 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.8725 -1.5760 -3.4690 34 1 3.2385 -0.1689 -5.4822 35 1 2.7619 2.2670 -5.3365 36 1 1.9464 3.2119 -3.2173 37 1 1.2952 0.6345 2.5392 38 1 3.3661 -0.9637 3.6047 39 1 1.8448 -1.8835 3.6939 40 1 2.1959 1.8687 5.7191 41 1 3.5707 1.2286 4.7867 42 1 2.1205 1.8213 3.9417 43 1 1.9298 -1.8059 6.2028 44 1 3.4671 -0.9162 6.0907 45 1 2.4391 0.9887 7.3205 46 1 2.3894 -0.5116 8.2780 47 1 0.2107 0.7550 8.3084 48 1 0.0514 -0.8892 7.6420 49 1 -2.7353 1.0833 3.7082 50 1 -0.0112 0.6110 4.1199 51 1 -0.0913 -0.9839 4.9090 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484175512.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:02 Heat of formation + Delta-G solvation = -19.763202 kcal Electronic energy + Delta-G solvation = -31581.767773 eV Core-core repulsion = 27482.063996 eV Total energy + Delta-G solvation = -4099.703777 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.89777 -39.75716 -38.55889 -37.56571 -34.77436 -33.32118 -32.71955 -32.29413 -31.14412 -30.11135 -29.82949 -26.62008 -25.83981 -25.33291 -24.61685 -23.72541 -22.87027 -22.13321 -20.61588 -20.07742 -18.64571 -18.15255 -17.39682 -16.73059 -16.46120 -16.09463 -15.77764 -15.57928 -15.20572 -14.72412 -14.60846 -14.11520 -13.99971 -13.90387 -13.66755 -13.42900 -13.27181 -13.16411 -13.13138 -12.73026 -12.35066 -12.25153 -12.17717 -12.16433 -11.76504 -11.64819 -11.32379 -11.13556 -10.99626 -10.87991 -10.68294 -10.40409 -10.20490 -10.17687 -10.10932 -9.85865 -9.80883 -9.67195 -9.46005 -9.39325 -8.74594 -8.67486 -8.51999 -6.70129 -5.83800 -3.25424 0.94286 1.05205 2.57275 2.79374 3.31688 3.41525 3.42817 3.56658 3.67342 4.09007 4.44565 4.61187 4.77685 4.82147 4.90432 4.97233 5.04059 5.12009 5.12850 5.26931 5.42555 5.48628 5.49741 5.56763 5.66979 5.72442 5.76248 5.78831 5.94945 5.95579 6.02773 6.08063 6.15379 6.19059 6.22186 6.24401 6.39940 6.42049 6.52800 6.59922 6.72531 6.81431 6.86205 6.95119 7.02603 7.09502 7.26426 7.54517 7.64250 7.75051 7.76202 8.38924 8.41267 9.16327 9.79712 10.37123 11.23989 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011874 B = 0.002995 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.590652 B = 9345.460223 C =10956.010125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.074 3.926 3 H 0.112 0.888 4 O -0.276 6.276 5 C 0.327 3.673 6 C -0.191 4.191 7 C -0.041 4.041 8 C -0.218 4.218 9 C 0.141 3.859 10 N -0.541 5.541 11 C 0.515 3.485 12 O -0.534 6.534 13 N -0.710 5.710 14 C 0.138 3.862 15 C -0.103 4.103 16 C -0.126 4.126 17 C -0.095 4.095 18 C -0.135 4.135 19 C 0.143 3.857 20 N -0.589 5.589 21 C -0.247 4.247 22 H 0.065 0.935 23 C 0.002 3.998 24 N -0.901 5.901 25 Si 0.896 3.104 26 H -0.278 1.278 27 H -0.289 1.289 28 H -0.291 1.291 29 C 0.185 3.815 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.142 0.858 34 H 0.140 0.860 35 H 0.136 0.864 36 H 0.159 0.841 37 H 0.407 0.593 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.036 0.964 42 H 0.044 0.956 43 H 0.056 0.944 44 H 0.048 0.952 45 H 0.062 0.938 46 H 0.049 0.951 47 H 0.052 0.948 48 H 0.017 0.983 49 H 0.252 0.748 50 H 0.088 0.912 51 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.904 0.509 -13.254 16.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.014 3.986 3 H 0.130 0.870 4 O -0.182 6.182 5 C 0.148 3.852 6 C -0.211 4.211 7 C -0.067 4.067 8 C -0.238 4.238 9 C -0.015 4.015 10 N -0.265 5.265 11 C 0.299 3.701 12 O -0.410 6.410 13 N -0.364 5.364 14 C 0.014 3.986 15 C -0.105 4.105 16 C -0.184 4.184 17 C -0.133 4.133 18 C -0.174 4.174 19 C 0.017 3.983 20 N -0.311 5.311 21 C -0.377 4.377 22 H 0.083 0.917 23 C -0.196 4.196 24 N -0.546 5.546 25 Si 0.726 3.274 26 H -0.203 1.203 27 H -0.215 1.215 28 H -0.218 1.218 29 C 0.059 3.941 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.106 0.894 33 H 0.160 0.840 34 H 0.158 0.842 35 H 0.154 0.846 36 H 0.177 0.823 37 H 0.244 0.756 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.055 0.945 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.066 0.934 45 H 0.081 0.919 46 H 0.068 0.932 47 H 0.070 0.930 48 H 0.034 0.966 49 H 0.063 0.937 50 H 0.106 0.894 51 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 9.935 -0.168 -12.587 16.037 hybrid contribution -0.516 1.036 -0.895 1.463 sum 9.419 0.868 -13.482 16.469 Atomic orbital electron populations 1.22169 0.91825 1.03896 1.04276 1.22126 0.96169 0.97782 0.82542 0.87032 1.86379 1.79625 1.34476 1.17671 1.19943 0.90709 0.87401 0.87177 1.21098 1.06372 1.02245 0.91427 1.21408 0.94224 0.93451 0.97594 1.21971 1.05690 0.96224 0.99958 1.22450 0.92403 0.99248 0.87351 1.67303 1.21677 1.04808 1.32696 1.20109 0.80094 0.85469 0.84383 1.90696 1.40401 1.23250 1.86666 1.45942 1.57211 1.28163 1.05053 1.21406 0.98228 0.95890 0.83059 1.21547 1.01453 0.95054 0.92432 1.21729 0.97921 0.96186 1.02531 1.21347 0.98932 0.98546 0.94510 1.22043 0.99301 0.99851 0.96199 1.20929 0.90926 0.96480 0.89993 1.43996 1.55348 1.32225 0.99521 1.19210 1.11951 0.97474 1.09063 0.91704 1.24997 0.96863 0.97174 1.00553 1.70051 1.34522 1.28511 1.21485 0.86314 0.78795 0.84448 0.77807 1.20314 1.21523 1.21806 1.20796 0.86113 0.96618 0.90599 0.91073 0.91172 0.89403 0.83983 0.84224 0.84635 0.82349 0.75623 0.92192 0.91693 0.90907 0.94498 0.93689 0.92532 0.93372 0.91939 0.93202 0.92966 0.96552 0.93743 0.89352 0.96394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 9.49 37.16 0.35 -1.96 16 2 C 0.07 1.11 2.90 -27.88 -0.08 1.03 16 3 H 0.11 1.58 6.99 -51.93 -0.36 1.22 16 4 O -0.28 -4.33 9.30 -38.59 -0.36 -4.69 16 5 C 0.33 4.42 7.45 -17.12 -0.13 4.29 16 6 C -0.19 -2.06 10.04 -39.28 -0.39 -2.46 16 7 C -0.04 -0.34 10.17 -39.31 -0.40 -0.74 16 8 C -0.22 -1.70 10.11 -39.43 -0.40 -2.10 16 9 C 0.14 1.35 11.18 -17.56 -0.20 1.15 16 10 N -0.54 -6.87 8.65 -13.33 -0.12 -6.99 16 11 C 0.52 8.86 7.18 -10.98 -0.08 8.78 16 12 O -0.53 -10.90 16.51 -14.30 -0.24 -11.14 16 13 N -0.71 -11.59 4.96 -60.30 -0.30 -11.89 16 14 C 0.14 2.29 4.57 -4.04 -0.02 2.28 16 15 C -0.10 -1.78 0.53 -154.38 -0.08 -1.86 16 16 C -0.13 -2.11 7.81 37.16 0.29 -1.82 16 17 C -0.10 -1.53 4.71 -26.69 -0.13 -1.66 16 18 C -0.13 -2.22 5.74 -26.61 -0.15 -2.37 16 19 C 0.14 2.86 6.52 -3.71 -0.02 2.84 16 20 N -0.59 -13.71 2.44 -172.32 -0.42 -14.13 16 21 C -0.25 -6.36 9.58 -15.06 -0.14 -6.51 16 22 H 0.07 1.67 7.89 -52.49 -0.41 1.25 16 23 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 24 N -0.90 -24.38 11.19 55.49 0.62 -23.76 16 25 Si 0.90 20.62 29.59 -169.99 -5.03 15.59 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 28 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 29 C 0.19 4.02 3.73 -3.71 -0.01 4.00 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.09 1.26 7.92 -51.93 -0.41 0.85 16 33 H 0.14 1.37 8.06 -52.49 -0.42 0.94 16 34 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 35 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 36 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.41 6.51 6.01 -40.82 -0.25 6.27 16 38 H 0.06 0.97 8.14 -51.92 -0.42 0.54 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.07 1.34 5.97 -51.93 -0.31 1.03 16 41 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.04 0.74 6.87 -51.93 -0.36 0.39 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.06 1.04 6.33 -51.93 -0.33 0.71 16 46 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 48 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.25 6.65 8.31 -40.82 -0.34 6.31 16 50 H 0.09 2.08 4.94 -51.93 -0.26 1.82 16 51 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 LS Contribution 403.36 15.07 6.08 6.08 Total: -1.00 -30.97 403.36 -9.59 -40.56 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -8.15 Total: 7.49 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -1.68 Total: 2.87 kcal Atomic # 7 Polarization: -56.55 SS G_CDS: -0.21 Total: -56.77 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -0.60 Total: -15.82 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.59 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -30.97 -9.59 -40.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484175512.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.799 kcal (2) G-P(sol) polarization free energy of solvation -30.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds