Wall clock time and date at job start Wed Apr 1 2020 04:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47311 * 2 1 4 4 O 1.42901 * 109.47080 * 240.00246 * 2 1 3 5 5 C 1.35677 * 117.00100 * 90.00180 * 4 2 1 6 6 C 1.38912 * 119.68248 * 179.97438 * 5 4 2 7 7 C 1.38383 * 119.11119 * 179.97438 * 6 5 4 8 8 C 1.38832 * 118.48507 * 0.02562 * 7 6 5 9 9 C 1.38053 * 119.28600 * 359.97438 * 8 7 6 10 10 N 1.31963 * 120.83414 * 359.74565 * 9 8 7 11 11 C 1.50705 * 109.46895 * 120.00024 * 2 1 3 12 12 O 1.21283 * 119.99565 * 115.00137 * 11 2 1 13 13 N 1.34775 * 120.00152 * 294.99660 * 11 2 1 14 14 C 1.46492 * 119.99822 * 179.97438 * 13 11 2 15 15 C 1.53003 * 109.47077 * 180.02562 * 14 13 11 16 16 C 1.53002 * 109.49911 * 300.00320 * 15 14 13 17 17 C 1.53040 * 109.52495 * 179.97438 * 15 14 13 18 18 C 1.53044 * 109.53509 * 178.66806 * 17 15 14 19 19 C 1.53189 * 109.31317 * 61.36895 * 18 17 15 20 20 N 1.46924 * 108.77504 * 305.36118 * 19 18 17 21 21 C 1.36940 * 120.63292 * 233.63310 * 20 19 18 22 22 H 1.07997 * 119.99823 * 27.66188 * 21 20 19 23 23 C 1.38813 * 119.99742 * 207.66649 * 21 20 19 24 24 N 1.31615 * 120.00330 * 17.37064 * 23 21 20 25 25 Si 1.86806 * 119.99544 * 197.36955 * 23 21 20 26 26 H 1.48502 * 109.47053 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.46903 * 120.00021 * 25 23 21 28 28 H 1.48493 * 109.47004 * 239.99957 * 25 23 21 29 29 C 1.46928 * 118.74088 * 53.60811 * 20 19 18 30 30 H 1.09000 * 109.47030 * 59.99612 * 1 2 3 31 31 H 1.09002 * 109.47311 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47098 * 299.99904 * 1 2 3 33 33 H 1.08000 * 120.44983 * 359.95762 * 6 5 4 34 34 H 1.07999 * 120.76038 * 180.02562 * 7 6 5 35 35 H 1.07999 * 120.35583 * 180.02562 * 8 7 6 36 36 H 1.08001 * 119.57947 * 179.97438 * 9 8 7 37 37 H 0.97004 * 119.99714 * 0.02562 * 13 11 2 38 38 H 1.09007 * 109.47102 * 60.01200 * 14 13 11 39 39 H 1.08993 * 109.47910 * 300.00875 * 14 13 11 40 40 H 1.08994 * 109.47444 * 180.02562 * 16 15 14 41 41 H 1.08997 * 109.47307 * 300.06297 * 16 15 14 42 42 H 1.09005 * 109.46788 * 60.06106 * 16 15 14 43 43 H 1.09001 * 109.46252 * 298.68616 * 17 15 14 44 44 H 1.08999 * 109.45752 * 58.65159 * 17 15 14 45 45 H 1.08991 * 109.49969 * 301.41307 * 18 17 15 46 46 H 1.09003 * 109.49408 * 181.31612 * 18 17 15 47 47 H 1.09001 * 109.59051 * 185.57587 * 19 18 17 48 48 H 1.09004 * 109.70844 * 65.21801 * 19 18 17 49 49 H 0.97003 * 120.00110 * 180.02562 * 24 23 21 50 50 H 1.08996 * 109.58974 * 186.60516 * 29 20 19 51 51 H 1.09007 * 109.70025 * 66.24759 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.2117 0.0830 -2.2742 6 6 2.6747 -0.5147 -3.4395 7 6 2.8795 0.2681 -4.5621 8 6 2.6131 1.6280 -4.4787 9 6 2.1548 2.1546 -3.2876 10 7 1.9639 1.3815 -2.2353 11 6 2.0323 -0.7104 1.2305 12 8 2.6529 -1.7467 1.1215 13 7 1.7919 -0.1942 2.4520 14 6 2.2797 -0.8851 3.6481 15 6 1.8745 -0.0952 4.8943 16 6 2.4844 1.3066 4.8310 17 6 2.3830 -0.8163 6.1447 18 6 2.0067 -0.0094 7.3895 19 6 0.4814 0.0994 7.4808 20 7 -0.0289 0.6591 6.2218 21 6 -0.8399 1.7625 6.2268 22 1 -0.7666 2.4829 7.0281 23 6 -1.7562 1.9551 5.2020 24 7 -2.0952 0.9486 4.4246 25 14 -2.5080 3.6428 4.9262 26 1 -1.9658 4.5958 5.9278 27 1 -2.1729 4.1165 3.5593 28 1 -3.9832 3.5574 5.0728 29 6 0.3477 0.0127 4.9573 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.8725 -1.5760 -3.4690 34 1 3.2385 -0.1689 -5.4822 35 1 2.7619 2.2670 -5.3365 36 1 1.9464 3.2119 -3.2173 37 1 1.2952 0.6345 2.5392 38 1 3.3661 -0.9637 3.6047 39 1 1.8448 -1.8835 3.6939 40 1 2.1959 1.8687 5.7191 41 1 3.5707 1.2286 4.7867 42 1 2.1205 1.8213 3.9417 43 1 1.9298 -1.8059 6.2028 44 1 3.4671 -0.9162 6.0907 45 1 2.4391 0.9887 7.3205 46 1 2.3894 -0.5116 8.2780 47 1 0.2107 0.7550 8.3084 48 1 0.0514 -0.8892 7.6420 49 1 -2.7353 1.0833 3.7082 50 1 -0.0112 0.6110 4.1199 51 1 -0.0913 -0.9839 4.9090 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484175512.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:01 Heat of formation + Delta-G solvation = -38.115559 kcal Electronic energy + Delta-G solvation = -31582.563591 eV Core-core repulsion = 27482.063996 eV Total energy + Delta-G solvation = -4100.499595 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.87114 -41.01789 -39.93566 -38.70637 -36.34570 -34.97552 -33.68850 -33.39463 -32.54385 -31.58164 -30.93068 -28.02137 -27.42964 -27.01928 -25.71682 -24.53387 -24.01239 -23.61406 -22.11711 -21.40744 -19.70089 -19.56111 -18.65469 -18.45495 -17.51262 -17.03683 -16.94486 -16.72990 -16.69354 -16.15879 -15.69770 -15.51941 -15.44758 -15.24081 -15.08310 -14.80249 -14.50642 -14.40325 -14.20983 -13.99926 -13.79604 -13.73505 -13.44087 -13.12959 -13.01971 -12.95087 -12.79285 -12.72859 -12.57329 -12.26987 -12.24967 -12.10274 -11.83411 -11.72015 -11.40142 -11.24487 -10.96379 -10.93378 -10.84615 -10.58185 -10.49301 -10.14338 -9.51024 -8.60122 -7.81218 -5.25479 0.19510 0.32479 1.40068 1.47506 1.49080 1.51986 1.60173 2.47637 2.54804 2.82246 3.26549 3.30993 3.51045 3.63746 3.81915 3.91508 3.95303 4.03309 4.04655 4.05215 4.10868 4.22558 4.34944 4.37063 4.51495 4.55448 4.59759 4.61395 4.72828 4.74670 4.80369 4.81076 4.99869 5.00883 5.05312 5.06845 5.12164 5.18678 5.26244 5.27975 5.32727 5.40310 5.46094 5.50183 5.53778 5.65524 5.74471 5.80058 6.14811 6.39337 6.44437 6.85955 7.04340 7.20997 7.91676 8.44365 9.24020 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011874 B = 0.002995 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.590652 B = 9345.460223 C =10956.010125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.083 3.917 3 H 0.119 0.881 4 O -0.300 6.300 5 C 0.290 3.710 6 C -0.203 4.203 7 C -0.035 4.035 8 C -0.202 4.202 9 C 0.124 3.876 10 N -0.564 5.564 11 C 0.515 3.485 12 O -0.569 6.569 13 N -0.705 5.705 14 C 0.142 3.858 15 C -0.090 4.090 16 C -0.120 4.120 17 C -0.095 4.095 18 C -0.123 4.123 19 C 0.136 3.864 20 N -0.604 5.604 21 C -0.254 4.254 22 H 0.063 0.937 23 C -0.042 4.042 24 N -0.928 5.928 25 Si 0.954 3.046 26 H -0.271 1.271 27 H -0.286 1.286 28 H -0.299 1.299 29 C 0.196 3.804 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.145 0.855 34 H 0.176 0.824 35 H 0.173 0.827 36 H 0.183 0.817 37 H 0.409 0.591 38 H 0.075 0.925 39 H 0.051 0.949 40 H 0.057 0.943 41 H 0.062 0.938 42 H 0.040 0.960 43 H 0.051 0.949 44 H 0.078 0.922 45 H 0.065 0.935 46 H 0.079 0.921 47 H 0.051 0.949 48 H 0.007 0.993 49 H 0.249 0.751 50 H 0.067 0.933 51 H -0.018 1.018 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.775 1.958 -14.558 18.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.023 3.977 3 H 0.137 0.863 4 O -0.207 6.207 5 C 0.112 3.888 6 C -0.224 4.224 7 C -0.061 4.061 8 C -0.222 4.222 9 C -0.031 4.031 10 N -0.289 5.289 11 C 0.301 3.699 12 O -0.448 6.448 13 N -0.357 5.357 14 C 0.018 3.982 15 C -0.092 4.092 16 C -0.177 4.177 17 C -0.133 4.133 18 C -0.162 4.162 19 C 0.011 3.989 20 N -0.327 5.327 21 C -0.384 4.384 22 H 0.080 0.920 23 C -0.238 4.238 24 N -0.574 5.574 25 Si 0.783 3.217 26 H -0.195 1.195 27 H -0.212 1.212 28 H -0.227 1.227 29 C 0.070 3.930 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.163 0.837 34 H 0.194 0.806 35 H 0.190 0.810 36 H 0.200 0.800 37 H 0.246 0.754 38 H 0.093 0.907 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.059 0.941 43 H 0.070 0.930 44 H 0.097 0.903 45 H 0.083 0.917 46 H 0.098 0.902 47 H 0.069 0.931 48 H 0.025 0.975 49 H 0.058 0.942 50 H 0.085 0.915 51 H 0.000 1.000 Dipole moment (debyes) X Y Z Total from point charges 11.822 1.302 -13.875 18.275 hybrid contribution -1.110 0.603 -0.540 1.374 sum 10.712 1.905 -14.416 18.060 Atomic orbital electron populations 1.22066 0.91486 1.03254 1.04333 1.21960 0.96196 0.97589 0.81918 0.86322 1.86333 1.80465 1.35583 1.18310 1.20243 0.93213 0.88105 0.87239 1.21358 1.06525 1.02930 0.91548 1.21878 0.92850 0.93528 0.97804 1.22417 1.03051 0.96491 1.00244 1.23025 0.92435 1.00200 0.87426 1.67230 1.22440 1.04771 1.34413 1.20520 0.79331 0.85000 0.85089 1.90665 1.42133 1.24807 1.87187 1.45937 1.56790 1.28017 1.05001 1.21355 0.98883 0.95094 0.82818 1.21349 0.98039 0.96183 0.93658 1.21653 0.99425 0.95006 1.01613 1.21379 1.00700 0.97903 0.93335 1.21917 0.96069 1.00516 0.97660 1.21099 0.93593 0.95605 0.88639 1.44234 1.55388 1.32008 1.01037 1.19444 1.11958 0.98158 1.08832 0.91955 1.25606 0.97649 0.99852 1.00701 1.70189 1.35245 1.30033 1.21972 0.85407 0.77301 0.81178 0.77764 1.19530 1.21220 1.22690 1.20566 0.89016 0.93908 0.89509 0.90164 0.92133 0.90014 0.83672 0.80625 0.80967 0.79961 0.75394 0.90699 0.93040 0.92363 0.91869 0.94112 0.93024 0.90323 0.91651 0.90236 0.93066 0.97539 0.94203 0.91453 0.99996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.53 9.49 71.98 0.68 -3.84 16 2 C 0.08 2.59 2.90 29.85 0.09 2.68 16 3 H 0.12 3.46 6.99 -2.39 -0.02 3.44 16 4 O -0.30 -9.78 9.30 -70.96 -0.66 -10.44 16 5 C 0.29 7.91 7.45 84.79 0.63 8.54 16 6 C -0.20 -4.25 10.04 22.47 0.23 -4.03 16 7 C -0.04 -0.48 10.17 22.45 0.23 -0.25 16 8 C -0.20 -2.48 10.11 22.37 0.23 -2.25 16 9 C 0.12 2.13 11.18 84.63 0.95 3.08 16 10 N -0.56 -14.10 8.65 -308.95 -2.67 -16.78 16 11 C 0.51 18.26 7.18 87.66 0.63 18.89 16 12 O -0.57 -23.92 16.51 15.95 0.26 -23.66 16 13 N -0.70 -23.51 4.96 -463.07 -2.30 -25.81 16 14 C 0.14 4.72 4.57 86.38 0.39 5.11 16 15 C -0.09 -3.08 0.53 -52.10 -0.03 -3.11 16 16 C -0.12 -3.83 7.81 71.98 0.56 -3.26 16 17 C -0.10 -2.88 4.71 30.62 0.14 -2.73 16 18 C -0.12 -3.78 5.74 30.67 0.18 -3.61 16 19 C 0.14 5.41 6.52 86.36 0.56 5.98 16 20 N -0.60 -28.52 2.44 -699.08 -1.70 -30.23 16 21 C -0.25 -13.20 9.58 84.03 0.81 -12.40 16 22 H 0.06 3.22 7.89 -2.91 -0.02 3.20 16 23 C -0.04 -2.24 4.91 84.86 0.42 -1.82 16 24 N -0.93 -51.74 11.19 21.65 0.24 -51.49 16 25 Si 0.95 42.86 29.59 68.60 2.03 44.89 16 26 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 27 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 28 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 29 C 0.20 8.75 3.73 86.36 0.32 9.07 16 30 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.06 1.86 8.14 -2.39 -0.02 1.85 16 32 H 0.08 2.47 7.92 -2.39 -0.02 2.45 16 33 H 0.15 2.79 8.06 -2.91 -0.02 2.76 16 34 H 0.18 1.04 8.06 -2.91 -0.02 1.01 16 35 H 0.17 0.84 8.06 -2.91 -0.02 0.82 16 36 H 0.18 2.03 8.06 -2.91 -0.02 2.01 16 37 H 0.41 13.47 6.01 -92.71 -0.56 12.91 16 38 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 39 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.06 2.05 5.97 -2.39 -0.01 2.04 16 41 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.04 1.32 6.87 -2.38 -0.02 1.30 16 43 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.06 2.01 6.33 -2.39 -0.02 2.00 16 46 H 0.08 2.01 8.14 -2.39 -0.02 2.00 16 47 H 0.05 2.00 7.93 -2.39 -0.02 1.99 16 48 H 0.01 0.27 8.14 -2.39 -0.02 0.26 16 49 H 0.25 13.50 8.31 -92.71 -0.77 12.73 16 50 H 0.07 3.28 4.94 -2.39 -0.01 3.27 16 51 H -0.02 -0.92 8.14 -2.38 -0.02 -0.94 16 Total: -1.00 -69.43 403.36 2.59 -66.84 By element: Atomic # 1 Polarization: 30.26 SS G_CDS: 0.37 Total: 30.63 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: 7.01 Total: 16.04 kcal Atomic # 7 Polarization: -117.88 SS G_CDS: -6.43 Total: -124.31 kcal Atomic # 8 Polarization: -33.70 SS G_CDS: -0.40 Total: -34.10 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -69.43 2.59 -66.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484175512.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.725 kcal (2) G-P(sol) polarization free energy of solvation -69.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds