Wall clock time and date at job start Wed Apr 1 2020 04:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46833 * 2 1 4 4 C 1.53003 * 109.46835 * 119.99625 * 2 1 3 5 5 N 1.46501 * 109.47151 * 65.25723 * 4 2 1 6 6 C 1.34775 * 120.00093 * 184.97581 * 5 4 2 7 7 O 1.21289 * 119.99870 * 359.97438 * 6 5 4 8 8 C 1.50695 * 120.00315 * 180.02562 * 6 5 4 9 9 H 1.09003 * 109.47229 * 300.00256 * 8 6 5 10 10 C 1.53006 * 109.46874 * 59.99558 * 8 6 5 11 11 C 1.50695 * 109.47308 * 179.97438 * 8 6 5 12 12 C 1.38237 * 120.00211 * 299.72174 * 11 8 6 13 13 C 1.38234 * 120.00288 * 179.81044 * 12 11 8 14 14 C 1.38230 * 119.99828 * 0.40194 * 13 12 11 15 15 C 1.38234 * 120.00443 * 359.85471 * 14 13 12 16 16 C 1.38237 * 119.99694 * 359.95525 * 15 14 13 17 17 N 1.46893 * 109.47479 * 239.99630 * 2 1 3 18 18 C 1.46898 * 111.00244 * 183.79909 * 17 2 1 19 19 C 1.46909 * 110.99805 * 59.84345 * 17 2 1 20 20 C 1.50703 * 109.47016 * 190.00075 * 19 17 2 21 21 O 1.21293 * 120.00204 * 0.02562 * 20 19 17 22 22 N 1.34776 * 119.99967 * 180.02562 * 20 19 17 23 23 C 1.37091 * 119.99906 * 180.02562 * 22 20 19 24 24 H 1.07998 * 120.00593 * 359.97438 * 23 22 20 25 25 C 1.38956 * 119.99613 * 180.02562 * 23 22 20 26 26 N 1.31410 * 120.00357 * 359.97438 * 25 23 22 27 27 Si 1.86808 * 119.99679 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.46995 * 59.99752 * 27 25 23 29 29 H 1.48499 * 109.46926 * 179.97438 * 27 25 23 30 30 H 1.48494 * 109.46870 * 299.99856 * 27 25 23 31 31 H 1.09006 * 109.46751 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47192 * 60.00457 * 1 2 3 33 33 H 1.08999 * 109.47018 * 300.00053 * 1 2 3 34 34 H 1.09006 * 109.46768 * 185.25521 * 4 2 1 35 35 H 1.08997 * 109.47234 * 305.25102 * 4 2 1 36 36 H 0.96996 * 119.99704 * 4.97527 * 5 4 2 37 37 H 1.09003 * 109.46798 * 179.97438 * 10 8 6 38 38 H 1.08997 * 109.47400 * 300.00116 * 10 8 6 39 39 H 1.09000 * 109.46945 * 60.00740 * 10 8 6 40 40 H 1.08009 * 119.99602 * 0.02562 * 12 11 8 41 41 H 1.07998 * 120.00069 * 180.23277 * 13 12 11 42 42 H 1.08000 * 120.00119 * 179.83539 * 14 13 12 43 43 H 1.07995 * 120.00567 * 179.97438 * 15 14 13 44 44 H 1.08000 * 120.00268 * 179.97438 * 16 15 14 45 45 H 1.09002 * 109.47146 * 66.52206 * 18 17 2 46 46 H 1.09000 * 109.47068 * 186.52608 * 18 17 2 47 47 H 1.09004 * 109.47098 * 306.51914 * 18 17 2 48 48 H 1.08995 * 109.47219 * 309.99876 * 19 17 2 49 49 H 1.09001 * 109.46551 * 70.00468 * 19 17 2 50 50 H 0.97000 * 119.99338 * 359.97438 * 22 20 19 51 51 H 0.96996 * 120.00069 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6577 -2.1341 1.1878 6 6 1.9135 -2.9475 2.2316 7 8 2.4606 -2.5098 3.2216 8 6 1.5208 -4.4010 2.1681 9 1 0.4424 -4.4804 2.0305 10 6 2.2355 -5.0715 0.9930 11 6 1.9156 -5.0845 3.4518 12 6 3.2428 -5.1187 3.8369 13 6 3.6045 -5.7423 5.0163 14 6 2.6400 -6.3390 5.8066 15 6 1.3135 -6.3095 5.4190 16 6 0.9513 -5.6825 4.2414 17 7 2.0198 -0.6925 -1.1993 18 6 3.4854 -0.7913 -1.1886 19 6 1.5457 -0.0286 -2.4210 20 6 1.8555 -0.8938 -3.6154 21 8 2.4156 -1.9589 -3.4639 22 7 1.5101 -0.4841 -4.8521 23 6 1.7914 -1.2714 -5.9385 24 1 2.2901 -2.2198 -5.8036 25 6 1.4358 -0.8486 -7.2136 26 7 0.8294 0.3056 -7.3779 27 14 1.8198 -1.9211 -8.6941 28 1 1.1364 -3.2312 -8.5468 29 1 1.3411 -1.2497 -9.9291 30 1 3.2865 -2.1352 -8.7831 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3633 0.5138 0.8900 34 1 3.1260 -0.6404 1.2976 35 1 1.6019 -0.2645 2.1368 36 1 1.2205 -2.4841 0.3959 37 1 1.9517 -6.1230 0.9474 38 1 1.9503 -4.5772 0.0644 39 1 3.3138 -4.9922 1.1306 40 1 3.9968 -4.6550 3.2178 41 1 4.6409 -5.7657 5.3190 42 1 2.9229 -6.8285 6.7268 43 1 0.5600 -6.7761 6.0361 44 1 -0.0850 -5.6598 3.9383 45 1 3.7996 -1.4444 -0.3745 46 1 3.8287 -1.2028 -2.1378 47 1 3.9153 0.2001 -1.0458 48 1 0.4690 0.1278 -2.3552 49 1 2.0467 0.9333 -2.5295 50 1 1.0618 0.3676 -4.9732 51 1 0.5809 0.6005 -8.2679 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485376091.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:14 Heat of formation + Delta-G solvation = -43.321494 kcal Electronic energy + Delta-G solvation = -30537.222883 eV Core-core repulsion = 26436.497542 eV Total energy + Delta-G solvation = -4100.725341 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.42125 -39.20757 -38.53073 -37.21771 -34.39496 -34.25452 -33.73286 -31.28169 -31.09918 -31.01355 -29.49968 -28.44746 -26.27171 -24.93260 -24.67408 -23.67450 -22.70182 -21.96720 -20.00253 -19.98767 -19.09874 -17.87763 -17.25422 -16.99309 -16.53554 -15.92729 -15.56068 -15.50617 -14.95183 -14.81006 -14.71155 -14.48281 -14.06413 -13.89312 -13.80753 -13.66621 -13.42518 -13.37877 -13.19413 -12.89786 -12.51634 -12.30740 -12.25436 -12.18932 -11.93824 -11.70317 -11.64665 -11.50130 -11.34344 -11.23007 -11.09170 -11.01875 -10.93722 -10.62874 -10.46925 -10.24273 -9.74913 -9.49590 -9.00471 -8.95295 -8.82725 -8.49282 -8.02330 -7.93568 -6.44678 -3.85556 1.22593 1.32904 2.66970 3.17410 3.20389 3.23640 3.27605 3.74225 3.86581 3.92228 4.20855 4.42050 4.62060 4.69221 4.85226 4.87100 4.92423 4.98834 5.06406 5.09381 5.11190 5.19886 5.25674 5.37367 5.44731 5.48321 5.55676 5.64414 5.65711 5.69376 5.71308 5.76805 5.86584 5.87970 5.94087 5.95398 5.98150 6.06042 6.17866 6.26180 6.33930 6.40805 6.46171 6.51235 6.52444 6.89078 7.19099 7.30765 7.51950 7.61564 8.02877 8.27991 8.58401 9.14963 9.51294 10.02813 10.72860 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016508 B = 0.002083 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.716056 B =13438.361589 C =14404.825074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.064 3.936 3 H 0.054 0.946 4 C 0.130 3.870 5 N -0.711 5.711 6 C 0.516 3.484 7 O -0.543 6.543 8 C -0.072 4.072 9 H 0.103 0.897 10 C -0.143 4.143 11 C -0.063 4.063 12 C -0.083 4.083 13 C -0.123 4.123 14 C -0.123 4.123 15 C -0.125 4.125 16 C -0.114 4.114 17 N -0.513 5.513 18 C 0.021 3.979 19 C 0.041 3.959 20 C 0.444 3.556 21 O -0.578 6.578 22 N -0.564 5.564 23 C -0.299 4.299 24 H 0.102 0.898 25 C 0.022 3.978 26 N -0.902 5.902 27 Si 0.930 3.070 28 H -0.273 1.273 29 H -0.285 1.285 30 H -0.274 1.274 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.413 0.587 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.062 0.938 46 H 0.094 0.906 47 H 0.014 0.986 48 H 0.092 0.908 49 H 0.047 0.953 50 H 0.392 0.608 51 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.890 -5.519 20.982 21.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.045 4.045 3 H 0.072 0.928 4 C 0.006 3.994 5 N -0.364 5.364 6 C 0.302 3.698 7 O -0.420 6.420 8 C -0.093 4.093 9 H 0.121 0.879 10 C -0.200 4.200 11 C -0.063 4.063 12 C -0.101 4.101 13 C -0.141 4.141 14 C -0.141 4.141 15 C -0.143 4.143 16 C -0.132 4.132 17 N -0.238 5.238 18 C -0.126 4.126 19 C -0.090 4.090 20 C 0.229 3.771 21 O -0.462 6.462 22 N -0.200 5.200 23 C -0.429 4.429 24 H 0.120 0.880 25 C -0.179 4.179 26 N -0.543 5.543 27 Si 0.757 3.243 28 H -0.199 1.199 29 H -0.210 1.210 30 H -0.199 1.199 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.250 0.750 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.138 0.862 45 H 0.081 0.919 46 H 0.113 0.887 47 H 0.032 0.968 48 H 0.110 0.890 49 H 0.065 0.935 50 H 0.225 0.775 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.376 -6.277 21.595 22.492 hybrid contribution -0.032 0.894 -1.292 1.571 sum -0.408 -5.383 20.303 21.008 Atomic orbital electron populations 1.21919 0.93864 1.02864 1.01937 1.21976 0.96321 0.95951 0.90275 0.92850 1.21351 0.99968 0.81219 0.96853 1.45884 1.61681 1.09649 1.19195 1.20438 0.78763 0.87860 0.82774 1.90702 1.42527 1.76813 1.31979 1.20298 1.02450 0.91785 0.94783 0.87906 1.21819 1.00803 1.01139 0.96254 1.19343 0.93776 0.97982 0.95209 1.20924 0.95668 0.97108 0.96421 1.21109 0.99419 0.98541 0.95032 1.21112 0.93304 1.00044 0.99660 1.21051 0.96251 1.00217 0.96774 1.21009 0.98826 0.98486 0.94855 1.61622 1.11311 1.50921 0.99962 1.22544 0.86395 0.98950 1.04736 1.21952 1.01404 0.95554 0.90132 1.19715 0.85263 0.88334 0.83780 1.90488 1.46342 1.24166 1.85210 1.41863 1.52563 1.20773 1.04834 1.19630 1.36205 1.02949 0.84078 0.87977 1.25261 0.96907 0.96685 0.99079 1.69598 1.40546 1.19981 1.24158 0.85927 0.78920 0.79570 0.79857 1.19891 1.21004 1.19939 0.91654 0.91816 0.92182 0.91702 0.91089 0.75006 0.91319 0.90716 0.91914 0.86338 0.86264 0.86395 0.86258 0.86207 0.91908 0.88722 0.96753 0.88950 0.93501 0.77538 0.91820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 8.86 37.16 0.33 -1.19 16 2 C 0.06 0.73 2.32 -67.71 -0.16 0.57 16 3 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 4 C 0.13 1.50 4.62 -4.04 -0.02 1.48 16 5 N -0.71 -8.26 4.97 -60.29 -0.30 -8.56 16 6 C 0.52 6.51 7.03 -10.99 -0.08 6.44 16 7 O -0.54 -8.62 15.12 5.55 0.08 -8.53 16 8 C -0.07 -0.75 2.90 -92.93 -0.27 -1.02 16 9 H 0.10 0.88 7.88 -51.93 -0.41 0.47 16 10 C -0.14 -1.41 8.90 37.16 0.33 -1.08 16 11 C -0.06 -0.70 4.39 -104.62 -0.46 -1.16 16 12 C -0.08 -0.97 7.94 -39.58 -0.31 -1.28 16 13 C -0.12 -1.27 10.05 -39.59 -0.40 -1.67 16 14 C -0.12 -1.16 10.05 -39.59 -0.40 -1.55 16 15 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 16 C -0.11 -1.14 9.67 -39.58 -0.38 -1.52 16 17 N -0.51 -7.49 3.73 -236.32 -0.88 -8.37 16 18 C 0.02 0.33 8.58 60.06 0.52 0.84 16 19 C 0.04 0.67 5.26 -4.97 -0.03 0.64 16 20 C 0.44 9.82 7.41 -10.98 -0.08 9.73 16 21 O -0.58 -14.52 13.98 5.55 0.08 -14.44 16 22 N -0.56 -13.69 5.29 -10.96 -0.06 -13.74 16 23 C -0.30 -8.07 9.68 -14.93 -0.14 -8.21 16 24 H 0.10 2.88 7.16 -52.49 -0.38 2.51 16 25 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 26 N -0.90 -23.98 13.05 55.50 0.72 -23.26 16 27 Si 0.93 20.62 29.55 -169.99 -5.02 15.60 16 28 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 29 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 30 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 31 H 0.06 0.69 7.31 -51.93 -0.38 0.31 16 32 H 0.06 0.66 6.20 -51.93 -0.32 0.34 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.80 6.81 -51.93 -0.35 0.45 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.41 4.77 6.84 -40.82 -0.28 4.50 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.78 7.56 -51.93 -0.39 0.38 16 39 H 0.06 0.65 7.37 -51.93 -0.38 0.27 16 40 H 0.12 1.41 7.51 -52.48 -0.39 1.01 16 41 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 42 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 44 H 0.12 0.96 7.95 -52.49 -0.42 0.55 16 45 H 0.06 0.90 6.75 -51.93 -0.35 0.55 16 46 H 0.09 1.78 5.79 -51.93 -0.30 1.48 16 47 H 0.01 0.20 8.12 -51.93 -0.42 -0.23 16 48 H 0.09 1.36 5.82 -51.93 -0.30 1.06 16 49 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 50 H 0.39 9.14 7.90 -40.82 -0.32 8.82 16 51 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 410.34 15.07 6.18 6.18 Total: -1.00 -31.53 410.34 -9.16 -40.69 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: -7.92 Total: 14.48 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -2.05 Total: -0.05 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: -0.51 Total: -53.93 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: 0.16 Total: -22.98 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -31.53 -9.16 -40.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485376091.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.633 kcal (2) G-P(sol) polarization free energy of solvation -31.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds