Wall clock time and date at job start Wed Apr 1 2020 04:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46833 * 2 1 4 4 C 1.53003 * 109.46835 * 119.99625 * 2 1 3 5 5 N 1.46501 * 109.47151 * 65.25723 * 4 2 1 6 6 C 1.34775 * 120.00093 * 184.97581 * 5 4 2 7 7 O 1.21289 * 119.99870 * 359.97438 * 6 5 4 8 8 C 1.50695 * 120.00315 * 180.02562 * 6 5 4 9 9 H 1.09003 * 109.47229 * 300.00256 * 8 6 5 10 10 C 1.53006 * 109.46874 * 59.99558 * 8 6 5 11 11 C 1.50695 * 109.47308 * 179.97438 * 8 6 5 12 12 C 1.38237 * 120.00211 * 299.72174 * 11 8 6 13 13 C 1.38234 * 120.00288 * 179.81044 * 12 11 8 14 14 C 1.38230 * 119.99828 * 0.40194 * 13 12 11 15 15 C 1.38234 * 120.00443 * 359.85471 * 14 13 12 16 16 C 1.38237 * 119.99694 * 359.95525 * 15 14 13 17 17 N 1.46893 * 109.47479 * 239.99630 * 2 1 3 18 18 C 1.46898 * 111.00244 * 183.79909 * 17 2 1 19 19 C 1.46909 * 110.99805 * 59.84345 * 17 2 1 20 20 C 1.50703 * 109.47016 * 190.00075 * 19 17 2 21 21 O 1.21293 * 120.00204 * 0.02562 * 20 19 17 22 22 N 1.34776 * 119.99967 * 180.02562 * 20 19 17 23 23 C 1.37091 * 119.99906 * 180.02562 * 22 20 19 24 24 H 1.07998 * 120.00593 * 359.97438 * 23 22 20 25 25 C 1.38956 * 119.99613 * 180.02562 * 23 22 20 26 26 N 1.31410 * 120.00357 * 359.97438 * 25 23 22 27 27 Si 1.86808 * 119.99679 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.46995 * 59.99752 * 27 25 23 29 29 H 1.48499 * 109.46926 * 179.97438 * 27 25 23 30 30 H 1.48494 * 109.46870 * 299.99856 * 27 25 23 31 31 H 1.09006 * 109.46751 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47192 * 60.00457 * 1 2 3 33 33 H 1.08999 * 109.47018 * 300.00053 * 1 2 3 34 34 H 1.09006 * 109.46768 * 185.25521 * 4 2 1 35 35 H 1.08997 * 109.47234 * 305.25102 * 4 2 1 36 36 H 0.96996 * 119.99704 * 4.97527 * 5 4 2 37 37 H 1.09003 * 109.46798 * 179.97438 * 10 8 6 38 38 H 1.08997 * 109.47400 * 300.00116 * 10 8 6 39 39 H 1.09000 * 109.46945 * 60.00740 * 10 8 6 40 40 H 1.08009 * 119.99602 * 0.02562 * 12 11 8 41 41 H 1.07998 * 120.00069 * 180.23277 * 13 12 11 42 42 H 1.08000 * 120.00119 * 179.83539 * 14 13 12 43 43 H 1.07995 * 120.00567 * 179.97438 * 15 14 13 44 44 H 1.08000 * 120.00268 * 179.97438 * 16 15 14 45 45 H 1.09002 * 109.47146 * 66.52206 * 18 17 2 46 46 H 1.09000 * 109.47068 * 186.52608 * 18 17 2 47 47 H 1.09004 * 109.47098 * 306.51914 * 18 17 2 48 48 H 1.08995 * 109.47219 * 309.99876 * 19 17 2 49 49 H 1.09001 * 109.46551 * 70.00468 * 19 17 2 50 50 H 0.97000 * 119.99338 * 359.97438 * 22 20 19 51 51 H 0.96996 * 120.00069 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6577 -2.1341 1.1878 6 6 1.9135 -2.9475 2.2316 7 8 2.4606 -2.5098 3.2216 8 6 1.5208 -4.4010 2.1681 9 1 0.4424 -4.4804 2.0305 10 6 2.2355 -5.0715 0.9930 11 6 1.9156 -5.0845 3.4518 12 6 3.2428 -5.1187 3.8369 13 6 3.6045 -5.7423 5.0163 14 6 2.6400 -6.3390 5.8066 15 6 1.3135 -6.3095 5.4190 16 6 0.9513 -5.6825 4.2414 17 7 2.0198 -0.6925 -1.1993 18 6 3.4854 -0.7913 -1.1886 19 6 1.5457 -0.0286 -2.4210 20 6 1.8555 -0.8938 -3.6154 21 8 2.4156 -1.9589 -3.4639 22 7 1.5101 -0.4841 -4.8521 23 6 1.7914 -1.2714 -5.9385 24 1 2.2901 -2.2198 -5.8036 25 6 1.4358 -0.8486 -7.2136 26 7 0.8294 0.3056 -7.3779 27 14 1.8198 -1.9211 -8.6941 28 1 1.1364 -3.2312 -8.5468 29 1 1.3411 -1.2497 -9.9291 30 1 3.2865 -2.1352 -8.7831 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3633 0.5138 0.8900 34 1 3.1260 -0.6404 1.2976 35 1 1.6019 -0.2645 2.1368 36 1 1.2205 -2.4841 0.3959 37 1 1.9517 -6.1230 0.9474 38 1 1.9503 -4.5772 0.0644 39 1 3.3138 -4.9922 1.1306 40 1 3.9968 -4.6550 3.2178 41 1 4.6409 -5.7657 5.3190 42 1 2.9229 -6.8285 6.7268 43 1 0.5600 -6.7761 6.0361 44 1 -0.0850 -5.6598 3.9383 45 1 3.7996 -1.4444 -0.3745 46 1 3.8287 -1.2028 -2.1378 47 1 3.9153 0.2001 -1.0458 48 1 0.4690 0.1278 -2.3552 49 1 2.0467 0.9333 -2.5295 50 1 1.0618 0.3676 -4.9732 51 1 0.5809 0.6005 -8.2679 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485376091.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:13 Heat of formation + Delta-G solvation = -63.657246 kcal Electronic energy + Delta-G solvation = -30538.104707 eV Core-core repulsion = 26436.497542 eV Total energy + Delta-G solvation = -4101.607165 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.36039 -40.48948 -39.64565 -38.55680 -35.97195 -35.30733 -34.98982 -33.23006 -32.10568 -31.75641 -30.32388 -29.74044 -27.50096 -26.45147 -25.55767 -25.02825 -23.46361 -22.82134 -21.28153 -20.89712 -20.60818 -19.78498 -18.23190 -17.92351 -17.72887 -17.02549 -16.80325 -16.56365 -16.38908 -16.10998 -15.79087 -15.69121 -15.30389 -15.21538 -15.11920 -14.64497 -14.48510 -14.41914 -14.13490 -13.84652 -13.69410 -13.53407 -13.33794 -13.16869 -13.11052 -12.99752 -12.92805 -12.72015 -12.50986 -12.41335 -12.30909 -12.27137 -12.12012 -11.86217 -11.78157 -11.66651 -11.41022 -10.75880 -10.22100 -9.97564 -9.95288 -9.74683 -9.59761 -9.22942 -8.43182 -5.90914 0.46333 0.56475 1.41157 1.43149 1.53311 1.68225 2.11062 2.26524 2.31874 2.75350 2.97997 3.24154 3.45680 3.60951 3.72624 3.84745 3.99916 4.09982 4.16304 4.22041 4.25321 4.29999 4.34474 4.35847 4.40969 4.54571 4.60107 4.63138 4.64855 4.68861 4.71396 4.80600 4.83926 4.91927 4.94644 5.03078 5.13511 5.18655 5.19709 5.24633 5.36405 5.44206 5.51458 5.60463 5.66046 5.73471 5.89082 6.08282 6.15866 6.20068 6.64106 6.65035 7.17345 7.30330 7.62040 8.17752 8.73869 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016508 B = 0.002083 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.716056 B =13438.361589 C =14404.825074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.070 3.930 3 H 0.069 0.931 4 C 0.133 3.867 5 N -0.705 5.705 6 C 0.515 3.485 7 O -0.578 6.578 8 C -0.066 4.066 9 H 0.124 0.876 10 C -0.136 4.136 11 C -0.079 4.079 12 C -0.105 4.105 13 C -0.136 4.136 14 C -0.128 4.128 15 C -0.128 4.128 16 C -0.123 4.123 17 N -0.522 5.522 18 C 0.030 3.970 19 C 0.054 3.946 20 C 0.444 3.556 21 O -0.610 6.610 22 N -0.576 5.576 23 C -0.328 4.328 24 H 0.079 0.921 25 C -0.014 4.014 26 N -0.921 5.921 27 Si 0.989 3.011 28 H -0.272 1.272 29 H -0.273 1.273 30 H -0.274 1.274 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.055 0.945 35 H 0.079 0.921 36 H 0.414 0.586 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.050 0.950 40 H 0.104 0.896 41 H 0.131 0.869 42 H 0.142 0.858 43 H 0.145 0.855 44 H 0.140 0.860 45 H 0.067 0.933 46 H 0.056 0.944 47 H 0.029 0.971 48 H 0.116 0.884 49 H 0.064 0.936 50 H 0.395 0.605 51 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.221 -5.519 22.047 22.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.038 4.038 3 H 0.086 0.914 4 C 0.008 3.992 5 N -0.357 5.357 6 C 0.302 3.698 7 O -0.458 6.458 8 C -0.087 4.087 9 H 0.142 0.858 10 C -0.194 4.194 11 C -0.079 4.079 12 C -0.124 4.124 13 C -0.154 4.154 14 C -0.146 4.146 15 C -0.146 4.146 16 C -0.140 4.140 17 N -0.247 5.247 18 C -0.118 4.118 19 C -0.077 4.077 20 C 0.231 3.769 21 O -0.496 6.496 22 N -0.214 5.214 23 C -0.458 4.458 24 H 0.097 0.903 25 C -0.214 4.214 26 N -0.562 5.562 27 Si 0.814 3.186 28 H -0.197 1.197 29 H -0.198 1.198 30 H -0.199 1.199 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.252 0.748 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.069 0.931 40 H 0.122 0.878 41 H 0.149 0.851 42 H 0.160 0.840 43 H 0.163 0.837 44 H 0.157 0.843 45 H 0.086 0.914 46 H 0.074 0.926 47 H 0.048 0.952 48 H 0.134 0.866 49 H 0.082 0.918 50 H 0.229 0.771 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.720 -6.261 22.660 23.572 hybrid contribution 0.415 0.878 -1.511 1.796 sum -1.306 -5.383 21.149 21.863 Atomic orbital electron populations 1.21920 0.92531 1.02941 1.02958 1.22021 0.97230 0.96198 0.88340 0.91351 1.21349 0.99445 0.81182 0.97187 1.45886 1.61152 1.09774 1.18934 1.20818 0.77995 0.88724 0.82251 1.90682 1.44181 1.77597 1.33332 1.20301 1.03596 0.90112 0.94705 0.85787 1.21758 1.00071 1.01792 0.95771 1.19499 0.93922 0.98669 0.95824 1.20980 0.95914 0.98237 0.97227 1.21356 1.00559 0.98598 0.94853 1.21452 0.93272 0.99558 1.00271 1.21430 0.96877 0.99606 0.96704 1.21314 0.99566 0.98181 0.94981 1.61568 1.10828 1.51853 1.00476 1.22356 0.87095 0.99620 1.02695 1.21815 1.03041 0.94658 0.88194 1.20744 0.83230 0.88301 0.84612 1.90473 1.47241 1.25979 1.85908 1.41932 1.53474 1.20832 1.05167 1.19585 1.37492 1.02979 0.85712 0.90272 1.25987 0.96470 0.97864 1.01060 1.69661 1.40839 1.20834 1.24897 0.85036 0.78582 0.78056 0.76967 1.19693 1.19772 1.19899 0.92077 0.91715 0.90220 0.92706 0.90318 0.74840 0.90110 0.91358 0.93068 0.87793 0.85084 0.84024 0.83717 0.84255 0.91400 0.92556 0.95242 0.86604 0.91830 0.77150 0.91462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 8.86 71.98 0.64 -1.94 16 2 C 0.07 1.44 2.32 44.92 0.10 1.55 16 3 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 4 C 0.13 2.87 4.62 86.38 0.40 3.27 16 5 N -0.71 -15.84 4.97 -463.05 -2.30 -18.14 16 6 C 0.52 12.88 7.03 87.66 0.62 13.49 16 7 O -0.58 -18.48 15.12 -3.06 -0.05 -18.53 16 8 C -0.07 -1.34 2.90 -12.29 -0.04 -1.37 16 9 H 0.12 1.93 7.88 -2.39 -0.02 1.92 16 10 C -0.14 -2.70 8.90 71.98 0.64 -2.06 16 11 C -0.08 -1.73 4.39 -19.87 -0.09 -1.82 16 12 C -0.11 -2.51 7.94 22.27 0.18 -2.33 16 13 C -0.14 -2.76 10.05 22.27 0.22 -2.54 16 14 C -0.13 -2.20 10.05 22.27 0.22 -1.97 16 15 C -0.13 -2.13 10.05 22.27 0.22 -1.90 16 16 C -0.12 -2.27 9.67 22.27 0.22 -2.05 16 17 N -0.52 -14.59 3.73 -901.60 -3.36 -17.95 16 18 C 0.03 0.92 8.58 127.69 1.10 2.01 16 19 C 0.05 1.68 5.26 85.56 0.45 2.13 16 20 C 0.44 19.76 7.41 87.66 0.65 20.41 16 21 O -0.61 -31.42 13.98 -3.07 -0.04 -31.46 16 22 N -0.58 -28.34 5.29 -306.98 -1.62 -29.96 16 23 C -0.33 -18.06 9.68 84.04 0.81 -17.24 16 24 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 25 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 26 N -0.92 -48.80 13.05 21.67 0.28 -48.52 16 27 Si 0.99 42.24 29.55 68.60 2.03 44.26 16 28 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 29 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 30 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 31 H 0.06 1.14 7.31 -2.38 -0.02 1.13 16 32 H 0.06 1.15 6.20 -2.39 -0.01 1.13 16 33 H 0.08 1.12 8.14 -2.39 -0.02 1.11 16 34 H 0.05 1.31 6.81 -2.38 -0.02 1.29 16 35 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.41 9.22 6.84 -92.71 -0.63 8.59 16 37 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.07 1.43 7.56 -2.39 -0.02 1.41 16 39 H 0.05 1.11 7.37 -2.39 -0.02 1.10 16 40 H 0.10 2.66 7.51 -2.91 -0.02 2.63 16 41 H 0.13 2.19 8.06 -2.91 -0.02 2.16 16 42 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 43 H 0.15 1.59 8.06 -2.91 -0.02 1.56 16 44 H 0.14 1.92 7.95 -2.91 -0.02 1.89 16 45 H 0.07 1.95 6.75 -2.39 -0.02 1.93 16 46 H 0.06 2.16 5.79 -2.39 -0.01 2.15 16 47 H 0.03 0.78 8.12 -2.38 -0.02 0.76 16 48 H 0.12 3.13 5.82 -2.39 -0.01 3.12 16 49 H 0.06 1.82 8.12 -2.39 -0.02 1.80 16 50 H 0.39 18.53 7.90 -92.71 -0.73 17.80 16 51 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16 Total: -1.00 -69.24 410.34 1.33 -67.91 By element: Atomic # 1 Polarization: 45.45 SS G_CDS: -0.42 Total: 45.03 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: 6.81 Total: 7.35 kcal Atomic # 7 Polarization: -107.56 SS G_CDS: -7.00 Total: -114.56 kcal Atomic # 8 Polarization: -49.90 SS G_CDS: -0.09 Total: -49.99 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.26 kcal Total: -69.24 1.33 -67.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485376091.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.252 kcal (2) G-P(sol) polarization free energy of solvation -69.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds