Wall clock time and date at job start Wed Apr 1 2020 04:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47016 * 2 1 4 4 C 1.52997 * 109.47504 * 239.99741 * 2 1 3 5 5 N 1.46505 * 109.47212 * 184.99959 * 4 2 1 6 6 C 1.34771 * 119.99622 * 179.97438 * 5 4 2 7 7 O 1.21280 * 120.00597 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.99622 * 179.97438 * 6 5 4 9 9 H 1.09001 * 109.47380 * 300.00190 * 8 6 5 10 10 C 1.53006 * 109.47180 * 60.00237 * 8 6 5 11 11 C 1.50703 * 109.47064 * 180.02562 * 8 6 5 12 12 C 1.38237 * 120.00103 * 299.72552 * 11 8 6 13 13 C 1.38230 * 119.99771 * 179.80642 * 12 11 8 14 14 C 1.38233 * 120.00168 * 0.40467 * 13 12 11 15 15 C 1.38231 * 120.00082 * 359.85397 * 14 13 12 16 16 C 1.38236 * 120.00203 * 359.95408 * 15 14 13 17 17 N 1.46905 * 109.47161 * 119.99449 * 2 1 3 18 18 C 1.46902 * 110.99582 * 58.95649 * 17 2 1 19 19 C 1.46900 * 111.00052 * 295.00563 * 17 2 1 20 20 C 1.50701 * 109.46959 * 189.99593 * 19 17 2 21 21 O 1.21286 * 120.00205 * 359.97438 * 20 19 17 22 22 N 1.34779 * 119.99829 * 179.97438 * 20 19 17 23 23 C 1.37099 * 119.99889 * 179.97438 * 22 20 19 24 24 H 1.07995 * 120.00048 * 0.02562 * 23 22 20 25 25 C 1.38948 * 119.99660 * 180.02562 * 23 22 20 26 26 N 1.31411 * 120.00572 * 0.02562 * 25 23 22 27 27 Si 1.86810 * 119.99576 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47046 * 90.00269 * 27 25 23 29 29 H 1.48500 * 109.46798 * 210.00171 * 27 25 23 30 30 H 1.48497 * 109.47126 * 329.99849 * 27 25 23 31 31 H 1.09004 * 109.46881 * 60.00620 * 1 2 3 32 32 H 1.09002 * 109.47016 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47400 * 300.00401 * 1 2 3 34 34 H 1.09002 * 109.47153 * 64.99951 * 4 2 1 35 35 H 1.09001 * 109.46832 * 305.00142 * 4 2 1 36 36 H 0.96996 * 119.99606 * 0.02562 * 5 4 2 37 37 H 1.08996 * 109.47129 * 300.00474 * 10 8 6 38 38 H 1.08998 * 109.46505 * 60.00277 * 10 8 6 39 39 H 1.08996 * 109.46884 * 179.97438 * 10 8 6 40 40 H 1.07995 * 119.99579 * 0.02562 * 12 11 8 41 41 H 1.08006 * 119.99625 * 180.23128 * 13 12 11 42 42 H 1.08000 * 120.00121 * 179.82845 * 14 13 12 43 43 H 1.08002 * 120.00484 * 179.97438 * 15 14 13 44 44 H 1.07992 * 120.00300 * 180.02562 * 16 15 14 45 45 H 1.08999 * 109.47144 * 60.00259 * 18 17 2 46 46 H 1.08999 * 109.46960 * 180.02562 * 18 17 2 47 47 H 1.09005 * 109.46988 * 299.99976 * 18 17 2 48 48 H 1.09005 * 109.47080 * 309.99637 * 19 17 2 49 49 H 1.08999 * 109.47125 * 69.99595 * 19 17 2 50 50 H 0.96998 * 119.99918 * 0.02562 * 22 20 19 51 51 H 0.96996 * 120.00499 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5002 -0.8264 -1.1904 6 6 4.1731 -1.4292 -2.1905 7 8 3.5701 -1.8843 -3.1393 8 6 5.6750 -1.5368 -2.1303 9 1 6.1094 -0.5380 -2.0852 10 6 6.0803 -2.3260 -0.8838 11 6 6.1774 -2.2473 -3.3607 12 6 5.7653 -3.5392 -3.6296 13 6 6.2230 -4.1894 -4.7602 14 6 7.0994 -3.5510 -5.6177 15 6 7.5157 -2.2611 -5.3460 16 6 7.0549 -1.6093 -4.2174 17 7 2.0197 -0.6924 1.1995 18 6 1.5283 -2.0760 1.2461 19 6 1.6486 0.0393 2.4181 20 6 2.3677 -0.5570 3.6006 21 8 3.1154 -1.4990 3.4438 22 7 2.1801 -0.0433 4.8325 23 6 2.8339 -0.5861 5.9084 24 1 3.4996 -1.4249 5.7688 25 6 2.6400 -0.0569 7.1784 26 7 1.8295 0.9635 7.3485 27 14 3.5314 -0.7960 8.6443 28 1 4.8354 -0.1097 8.8282 29 1 2.7043 -0.6228 9.8654 30 1 3.7631 -2.2431 8.4046 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 1.7517 -0.1584 -2.1369 35 1 1.6054 -1.7198 -1.2950 36 1 3.9824 -0.4627 -0.4314 37 1 5.7169 -1.8117 0.0059 38 1 5.6461 -3.3247 -0.9290 39 1 7.1666 -2.4042 -0.8405 40 1 5.0830 -4.0390 -2.9581 41 1 5.8981 -5.1974 -4.9722 42 1 7.4591 -4.0600 -6.4996 43 1 8.2007 -1.7624 -6.0157 44 1 7.3798 -0.6015 -4.0054 45 1 1.8763 -2.6150 0.3649 46 1 1.9053 -2.5654 2.1441 47 1 0.4384 -2.0741 1.2640 48 1 1.9296 1.0872 2.3125 49 1 0.5721 -0.0344 2.5726 50 1 1.5818 0.7098 4.9580 51 1 1.6939 1.3327 8.2351 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485376092.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:18 Heat of formation + Delta-G solvation = -44.457556 kcal Electronic energy + Delta-G solvation = -30479.395044 eV Core-core repulsion = 26378.620440 eV Total energy + Delta-G solvation = -4100.774604 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.39321 -39.24108 -38.54772 -37.29398 -34.38820 -34.23077 -33.78343 -31.30429 -31.00257 -30.96438 -29.44893 -27.96631 -26.50752 -25.40672 -24.60474 -23.77181 -22.68438 -21.79542 -20.21043 -19.62852 -19.09646 -17.86546 -17.20886 -16.90628 -16.55532 -16.14123 -15.59053 -15.34916 -15.10089 -14.83673 -14.67315 -14.49739 -14.10789 -13.94168 -13.75566 -13.51335 -13.39983 -13.22380 -13.12197 -13.00226 -12.63210 -12.30952 -12.29069 -12.19727 -11.88639 -11.79186 -11.65836 -11.47727 -11.24221 -11.23598 -11.08513 -11.00424 -10.94202 -10.75184 -10.42294 -10.24939 -9.73383 -9.50453 -8.99858 -8.94487 -8.81435 -8.50491 -8.01369 -7.89474 -6.44837 -3.85677 1.23791 1.34113 2.68309 3.15203 3.20431 3.24287 3.29641 3.75414 3.86809 3.93915 4.21664 4.43637 4.63731 4.68837 4.86176 4.88270 4.95985 5.00812 5.07810 5.10517 5.13041 5.19020 5.23576 5.38629 5.43603 5.46449 5.52053 5.54391 5.65352 5.71732 5.73749 5.76655 5.87590 5.88086 5.91485 5.95411 5.97277 6.09306 6.15323 6.24446 6.35077 6.42062 6.48938 6.53046 6.55300 6.90305 7.19654 7.31464 7.52121 7.62197 8.03121 8.29051 8.58377 9.15088 9.51321 10.02831 10.72786 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014521 B = 0.002149 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.784411 B =13028.321935 C =14352.827577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.063 3.937 3 H 0.088 0.912 4 C 0.132 3.868 5 N -0.712 5.712 6 C 0.517 3.483 7 O -0.543 6.543 8 C -0.072 4.072 9 H 0.103 0.897 10 C -0.142 4.142 11 C -0.063 4.063 12 C -0.083 4.083 13 C -0.123 4.123 14 C -0.123 4.123 15 C -0.125 4.125 16 C -0.114 4.114 17 N -0.510 5.510 18 C 0.017 3.983 19 C 0.044 3.956 20 C 0.444 3.556 21 O -0.577 6.577 22 N -0.564 5.564 23 C -0.298 4.298 24 H 0.103 0.897 25 C 0.022 3.978 26 N -0.902 5.902 27 Si 0.929 3.071 28 H -0.278 1.278 29 H -0.284 1.284 30 H -0.270 1.270 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.412 0.588 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.060 0.940 46 H 0.095 0.905 47 H 0.019 0.981 48 H 0.087 0.913 49 H 0.050 0.950 50 H 0.391 0.609 51 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.272 -1.684 -20.779 21.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.046 4.046 3 H 0.106 0.894 4 C 0.007 3.993 5 N -0.364 5.364 6 C 0.302 3.698 7 O -0.420 6.420 8 C -0.093 4.093 9 H 0.121 0.879 10 C -0.200 4.200 11 C -0.063 4.063 12 C -0.101 4.101 13 C -0.141 4.141 14 C -0.141 4.141 15 C -0.143 4.143 16 C -0.132 4.132 17 N -0.233 5.233 18 C -0.131 4.131 19 C -0.087 4.087 20 C 0.229 3.771 21 O -0.462 6.462 22 N -0.201 5.201 23 C -0.428 4.428 24 H 0.121 0.879 25 C -0.180 4.180 26 N -0.543 5.543 27 Si 0.756 3.244 28 H -0.204 1.204 29 H -0.210 1.210 30 H -0.194 1.194 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.248 0.752 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.138 0.862 45 H 0.079 0.921 46 H 0.114 0.886 47 H 0.038 0.962 48 H 0.105 0.895 49 H 0.068 0.932 50 H 0.225 0.775 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.793 -2.560 -21.387 22.066 hybrid contribution -0.787 0.504 1.301 1.602 sum 4.006 -2.056 -20.086 20.584 Atomic orbital electron populations 1.22404 0.96658 1.02818 1.02667 1.22048 0.93469 0.98645 0.90424 0.89384 1.21362 0.80443 1.00828 0.96640 1.45845 1.07548 1.59417 1.23618 1.20430 0.89496 0.77644 0.82202 1.90699 1.70142 1.47752 1.33447 1.20303 0.92656 1.01233 0.95116 0.87928 1.21814 1.02318 1.00503 0.95339 1.19350 0.97151 0.94455 0.95356 1.20927 0.97904 0.94202 0.97074 1.21112 0.97994 1.00014 0.94981 1.21111 0.98255 0.95295 0.99469 1.21049 1.00592 0.95246 0.97423 1.21005 0.97849 0.99646 0.94693 1.61829 1.58876 1.02479 1.00152 1.22597 0.96747 0.89445 1.04315 1.21881 0.98150 0.98407 0.90277 1.19727 0.86699 0.86910 0.83764 1.90482 1.40791 1.30152 1.84736 1.41872 1.41508 1.31166 1.05534 1.19678 1.23434 1.14784 0.84874 0.87928 1.25259 0.97310 0.96357 0.99039 1.69605 1.36582 1.23912 1.24195 0.85870 0.78923 0.79475 0.80094 1.20394 1.20970 1.19445 0.91939 0.91838 0.91674 0.91406 0.91486 0.75171 0.90657 0.91897 0.91363 0.86318 0.86259 0.86398 0.86267 0.86215 0.92108 0.88626 0.96223 0.89499 0.93217 0.77542 0.91878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.87 8.50 37.16 0.32 -1.56 16 2 C 0.06 0.71 2.50 -67.71 -0.17 0.54 16 3 H 0.09 0.92 8.03 -51.93 -0.42 0.50 16 4 C 0.13 1.51 4.69 -4.04 -0.02 1.49 16 5 N -0.71 -8.36 5.28 -60.29 -0.32 -8.68 16 6 C 0.52 6.63 7.03 -10.99 -0.08 6.55 16 7 O -0.54 -8.73 15.13 5.56 0.08 -8.65 16 8 C -0.07 -0.76 2.90 -92.92 -0.27 -1.03 16 9 H 0.10 0.89 7.88 -51.93 -0.41 0.48 16 10 C -0.14 -1.45 8.90 37.16 0.33 -1.12 16 11 C -0.06 -0.71 4.39 -104.62 -0.46 -1.17 16 12 C -0.08 -0.98 7.94 -39.58 -0.31 -1.30 16 13 C -0.12 -1.29 10.05 -39.59 -0.40 -1.69 16 14 C -0.12 -1.17 10.05 -39.59 -0.40 -1.57 16 15 C -0.13 -1.18 10.05 -39.58 -0.40 -1.58 16 16 C -0.11 -1.16 9.67 -39.58 -0.38 -1.54 16 17 N -0.51 -7.37 3.93 -236.32 -0.93 -8.29 16 18 C 0.02 0.25 8.46 60.07 0.51 0.76 16 19 C 0.04 0.71 4.89 -4.98 -0.02 0.69 16 20 C 0.44 9.78 7.47 -10.98 -0.08 9.70 16 21 O -0.58 -14.50 13.91 5.55 0.08 -14.43 16 22 N -0.56 -13.67 5.29 -10.97 -0.06 -13.73 16 23 C -0.30 -8.04 9.68 -14.93 -0.14 -8.18 16 24 H 0.10 2.90 7.16 -52.49 -0.38 2.53 16 25 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 26 N -0.90 -23.98 13.05 55.50 0.72 -23.26 16 27 Si 0.93 20.62 29.55 -169.99 -5.02 15.59 16 28 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 29 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 30 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.67 6.38 -51.93 -0.33 0.34 16 33 H 0.06 0.67 6.75 -51.93 -0.35 0.32 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.84 6.70 -51.93 -0.35 0.50 16 36 H 0.41 4.71 7.55 -40.82 -0.31 4.40 16 37 H 0.07 0.81 7.56 -51.93 -0.39 0.41 16 38 H 0.06 0.68 7.38 -51.93 -0.38 0.30 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.12 1.44 7.52 -52.49 -0.39 1.05 16 41 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 42 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 43 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 44 H 0.12 0.97 7.94 -52.49 -0.42 0.56 16 45 H 0.06 0.87 6.44 -51.93 -0.33 0.53 16 46 H 0.10 1.80 5.82 -51.93 -0.30 1.50 16 47 H 0.02 0.27 6.28 -51.93 -0.33 -0.05 16 48 H 0.09 1.26 8.00 -51.93 -0.42 0.85 16 49 H 0.05 0.75 6.94 -51.93 -0.36 0.39 16 50 H 0.39 9.12 7.90 -40.82 -0.32 8.80 16 51 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 409.27 15.07 6.17 6.17 Total: -1.00 -31.66 409.27 -9.21 -40.87 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: -7.86 Total: 14.91 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -2.08 Total: -0.52 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: -0.58 Total: -53.95 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: 0.16 Total: -23.08 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -31.66 -9.21 -40.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485376092.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.585 kcal (2) G-P(sol) polarization free energy of solvation -31.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds