Wall clock time and date at job start Wed Apr 1 2020 04:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47016 * 2 1 4 4 C 1.52997 * 109.47504 * 239.99741 * 2 1 3 5 5 N 1.46505 * 109.47212 * 184.99959 * 4 2 1 6 6 C 1.34771 * 119.99622 * 179.97438 * 5 4 2 7 7 O 1.21280 * 120.00597 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.99622 * 179.97438 * 6 5 4 9 9 H 1.09001 * 109.47380 * 300.00190 * 8 6 5 10 10 C 1.53006 * 109.47180 * 60.00237 * 8 6 5 11 11 C 1.50703 * 109.47064 * 180.02562 * 8 6 5 12 12 C 1.38237 * 120.00103 * 299.72552 * 11 8 6 13 13 C 1.38230 * 119.99771 * 179.80642 * 12 11 8 14 14 C 1.38233 * 120.00168 * 0.40467 * 13 12 11 15 15 C 1.38231 * 120.00082 * 359.85397 * 14 13 12 16 16 C 1.38236 * 120.00203 * 359.95408 * 15 14 13 17 17 N 1.46905 * 109.47161 * 119.99449 * 2 1 3 18 18 C 1.46902 * 110.99582 * 58.95649 * 17 2 1 19 19 C 1.46900 * 111.00052 * 295.00563 * 17 2 1 20 20 C 1.50701 * 109.46959 * 189.99593 * 19 17 2 21 21 O 1.21286 * 120.00205 * 359.97438 * 20 19 17 22 22 N 1.34779 * 119.99829 * 179.97438 * 20 19 17 23 23 C 1.37099 * 119.99889 * 179.97438 * 22 20 19 24 24 H 1.07995 * 120.00048 * 0.02562 * 23 22 20 25 25 C 1.38948 * 119.99660 * 180.02562 * 23 22 20 26 26 N 1.31411 * 120.00572 * 0.02562 * 25 23 22 27 27 Si 1.86810 * 119.99576 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47046 * 90.00269 * 27 25 23 29 29 H 1.48500 * 109.46798 * 210.00171 * 27 25 23 30 30 H 1.48497 * 109.47126 * 329.99849 * 27 25 23 31 31 H 1.09004 * 109.46881 * 60.00620 * 1 2 3 32 32 H 1.09002 * 109.47016 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47400 * 300.00401 * 1 2 3 34 34 H 1.09002 * 109.47153 * 64.99951 * 4 2 1 35 35 H 1.09001 * 109.46832 * 305.00142 * 4 2 1 36 36 H 0.96996 * 119.99606 * 0.02562 * 5 4 2 37 37 H 1.08996 * 109.47129 * 300.00474 * 10 8 6 38 38 H 1.08998 * 109.46505 * 60.00277 * 10 8 6 39 39 H 1.08996 * 109.46884 * 179.97438 * 10 8 6 40 40 H 1.07995 * 119.99579 * 0.02562 * 12 11 8 41 41 H 1.08006 * 119.99625 * 180.23128 * 13 12 11 42 42 H 1.08000 * 120.00121 * 179.82845 * 14 13 12 43 43 H 1.08002 * 120.00484 * 179.97438 * 15 14 13 44 44 H 1.07992 * 120.00300 * 180.02562 * 16 15 14 45 45 H 1.08999 * 109.47144 * 60.00259 * 18 17 2 46 46 H 1.08999 * 109.46960 * 180.02562 * 18 17 2 47 47 H 1.09005 * 109.46988 * 299.99976 * 18 17 2 48 48 H 1.09005 * 109.47080 * 309.99637 * 19 17 2 49 49 H 1.08999 * 109.47125 * 69.99595 * 19 17 2 50 50 H 0.96998 * 119.99918 * 0.02562 * 22 20 19 51 51 H 0.96996 * 120.00499 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5002 -0.8264 -1.1904 6 6 4.1731 -1.4292 -2.1905 7 8 3.5701 -1.8843 -3.1393 8 6 5.6750 -1.5368 -2.1303 9 1 6.1094 -0.5380 -2.0852 10 6 6.0803 -2.3260 -0.8838 11 6 6.1774 -2.2473 -3.3607 12 6 5.7653 -3.5392 -3.6296 13 6 6.2230 -4.1894 -4.7602 14 6 7.0994 -3.5510 -5.6177 15 6 7.5157 -2.2611 -5.3460 16 6 7.0549 -1.6093 -4.2174 17 7 2.0197 -0.6924 1.1995 18 6 1.5283 -2.0760 1.2461 19 6 1.6486 0.0393 2.4181 20 6 2.3677 -0.5570 3.6006 21 8 3.1154 -1.4990 3.4438 22 7 2.1801 -0.0433 4.8325 23 6 2.8339 -0.5861 5.9084 24 1 3.4996 -1.4249 5.7688 25 6 2.6400 -0.0569 7.1784 26 7 1.8295 0.9635 7.3485 27 14 3.5314 -0.7960 8.6443 28 1 4.8354 -0.1097 8.8282 29 1 2.7043 -0.6228 9.8654 30 1 3.7631 -2.2431 8.4046 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 1.7517 -0.1584 -2.1369 35 1 1.6054 -1.7198 -1.2950 36 1 3.9824 -0.4627 -0.4314 37 1 5.7169 -1.8117 0.0059 38 1 5.6461 -3.3247 -0.9290 39 1 7.1666 -2.4042 -0.8405 40 1 5.0830 -4.0390 -2.9581 41 1 5.8981 -5.1974 -4.9722 42 1 7.4591 -4.0600 -6.4996 43 1 8.2007 -1.7624 -6.0157 44 1 7.3798 -0.6015 -4.0054 45 1 1.8763 -2.6150 0.3649 46 1 1.9053 -2.5654 2.1441 47 1 0.4384 -2.0741 1.2640 48 1 1.9296 1.0872 2.3125 49 1 0.5721 -0.0344 2.5726 50 1 1.5818 0.7098 4.9580 51 1 1.6939 1.3327 8.2351 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485376092.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:17 Heat of formation + Delta-G solvation = -65.389603 kcal Electronic energy + Delta-G solvation = -30480.302726 eV Core-core repulsion = 26378.620440 eV Total energy + Delta-G solvation = -4101.682286 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.34299 -40.52654 -39.63254 -38.66661 -35.95338 -35.33476 -34.99380 -33.23148 -32.03760 -31.75823 -30.25015 -29.35306 -27.44865 -26.99743 -25.63712 -25.10003 -23.45573 -22.64457 -21.39578 -20.82156 -20.45799 -19.77103 -18.20117 -17.80996 -17.78524 -17.12243 -16.88674 -16.53467 -16.30154 -16.25836 -15.83266 -15.73901 -15.47803 -15.11754 -14.90996 -14.64486 -14.46133 -14.18050 -14.15063 -14.02638 -13.66102 -13.57381 -13.40360 -13.17899 -13.07054 -13.00173 -12.87872 -12.79678 -12.50070 -12.42494 -12.36128 -12.25153 -12.11592 -11.86929 -11.78671 -11.72277 -11.40913 -10.75618 -10.22951 -9.98147 -9.95120 -9.74833 -9.59850 -9.16777 -8.43310 -5.90900 0.46207 0.56319 1.39229 1.43100 1.54930 1.68093 2.11554 2.26636 2.31564 2.77805 2.97720 3.24307 3.47614 3.61013 3.75345 3.83438 4.03555 4.12034 4.16261 4.25263 4.28010 4.29901 4.31851 4.35808 4.36874 4.56198 4.59170 4.62950 4.65129 4.68171 4.69416 4.77690 4.84707 4.85583 4.92569 5.02202 5.13477 5.19581 5.20619 5.25319 5.30895 5.44588 5.52785 5.60367 5.65875 5.73467 5.90237 6.08788 6.15784 6.21208 6.64348 6.65373 7.17759 7.30563 7.62515 8.18434 8.73970 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014521 B = 0.002149 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.784411 B =13028.321935 C =14352.827577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.071 3.929 3 H 0.106 0.894 4 C 0.134 3.866 5 N -0.707 5.707 6 C 0.515 3.485 7 O -0.579 6.579 8 C -0.066 4.066 9 H 0.126 0.874 10 C -0.136 4.136 11 C -0.079 4.079 12 C -0.106 4.106 13 C -0.136 4.136 14 C -0.128 4.128 15 C -0.128 4.128 16 C -0.122 4.122 17 N -0.519 5.519 18 C 0.027 3.973 19 C 0.058 3.942 20 C 0.443 3.557 21 O -0.611 6.611 22 N -0.577 5.577 23 C -0.327 4.327 24 H 0.079 0.921 25 C -0.015 4.015 26 N -0.921 5.921 27 Si 0.989 3.011 28 H -0.271 1.271 29 H -0.274 1.274 30 H -0.274 1.274 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.053 0.947 36 H 0.414 0.586 37 H 0.068 0.932 38 H 0.048 0.952 39 H 0.080 0.920 40 H 0.103 0.897 41 H 0.131 0.869 42 H 0.142 0.858 43 H 0.146 0.854 44 H 0.140 0.860 45 H 0.065 0.935 46 H 0.055 0.945 47 H 0.033 0.967 48 H 0.113 0.887 49 H 0.067 0.933 50 H 0.395 0.605 51 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.676 -0.281 -21.909 22.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.037 4.037 3 H 0.124 0.876 4 C 0.010 3.990 5 N -0.359 5.359 6 C 0.302 3.698 7 O -0.459 6.459 8 C -0.087 4.087 9 H 0.144 0.856 10 C -0.193 4.193 11 C -0.080 4.080 12 C -0.124 4.124 13 C -0.154 4.154 14 C -0.145 4.145 15 C -0.146 4.146 16 C -0.140 4.140 17 N -0.243 5.243 18 C -0.121 4.121 19 C -0.073 4.073 20 C 0.231 3.769 21 O -0.497 6.497 22 N -0.215 5.215 23 C -0.456 4.456 24 H 0.097 0.903 25 C -0.214 4.214 26 N -0.563 5.563 27 Si 0.813 3.187 28 H -0.197 1.197 29 H -0.199 1.199 30 H -0.199 1.199 31 H 0.101 0.899 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.072 0.928 36 H 0.251 0.749 37 H 0.087 0.913 38 H 0.067 0.933 39 H 0.099 0.901 40 H 0.121 0.879 41 H 0.149 0.851 42 H 0.160 0.840 43 H 0.163 0.837 44 H 0.158 0.842 45 H 0.084 0.916 46 H 0.074 0.926 47 H 0.052 0.948 48 H 0.131 0.869 49 H 0.085 0.915 50 H 0.229 0.771 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.184 -1.134 -22.516 23.133 hybrid contribution -0.909 0.028 1.540 1.789 sum 4.276 -1.107 -20.976 21.436 Atomic orbital electron populations 1.22372 0.95312 1.02753 1.03741 1.22086 0.94469 0.98848 0.88327 0.87622 1.21369 0.80188 1.00307 0.97181 1.45863 1.07791 1.58859 1.23341 1.20826 0.90438 0.76879 0.81689 1.90678 1.71029 1.49286 1.34880 1.20306 0.91058 1.02360 0.94948 0.85649 1.21747 1.02972 0.99616 0.94989 1.19509 0.97913 0.94466 0.96065 1.20976 0.98636 0.94989 0.97811 1.21357 0.98394 1.00778 0.94866 1.21452 0.97586 0.95595 0.99903 1.21435 1.00479 0.95251 0.97435 1.21316 0.97428 1.00617 0.94644 1.61752 1.59698 1.02176 1.00691 1.22385 0.97390 0.89890 1.02448 1.21742 0.98139 0.99138 0.88311 1.20788 0.85710 0.85862 0.84569 1.90471 1.42169 1.31565 1.85449 1.41940 1.41983 1.31649 1.05879 1.19610 1.24416 1.15083 0.86527 0.90338 1.25977 0.97844 0.96632 1.00945 1.69664 1.37160 1.24474 1.24957 0.84981 0.78130 0.78367 0.77197 1.19690 1.19855 1.19903 0.89918 0.92490 0.91546 0.90439 0.92827 0.74863 0.91306 0.93280 0.90120 0.87912 0.85111 0.83993 0.83658 0.84176 0.91641 0.92629 0.94847 0.86922 0.91494 0.77129 0.91476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.17 8.50 71.98 0.61 -2.55 16 2 C 0.07 1.42 2.50 44.91 0.11 1.53 16 3 H 0.11 1.83 8.03 -2.39 -0.02 1.81 16 4 C 0.13 2.89 4.69 86.38 0.40 3.29 16 5 N -0.71 -16.05 5.28 -463.06 -2.45 -18.50 16 6 C 0.51 13.13 7.03 87.66 0.62 13.74 16 7 O -0.58 -18.83 15.13 -3.03 -0.05 -18.88 16 8 C -0.07 -1.35 2.90 -12.28 -0.04 -1.39 16 9 H 0.13 1.96 7.88 -2.39 -0.02 1.95 16 10 C -0.14 -2.79 8.90 71.98 0.64 -2.15 16 11 C -0.08 -1.77 4.39 -19.86 -0.09 -1.86 16 12 C -0.11 -2.59 7.94 22.27 0.18 -2.41 16 13 C -0.14 -2.83 10.05 22.27 0.22 -2.61 16 14 C -0.13 -2.23 10.05 22.27 0.22 -2.01 16 15 C -0.13 -2.15 10.05 22.27 0.22 -1.92 16 16 C -0.12 -2.29 9.67 22.27 0.22 -2.07 16 17 N -0.52 -14.37 3.93 -901.59 -3.54 -17.91 16 18 C 0.03 0.82 8.46 127.69 1.08 1.89 16 19 C 0.06 1.77 4.89 85.56 0.42 2.19 16 20 C 0.44 19.67 7.47 87.66 0.66 20.32 16 21 O -0.61 -31.50 13.91 -3.05 -0.04 -31.55 16 22 N -0.58 -28.28 5.29 -306.99 -1.62 -29.90 16 23 C -0.33 -17.98 9.68 84.04 0.81 -17.17 16 24 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 25 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 26 N -0.92 -48.77 13.05 21.66 0.28 -48.48 16 27 Si 0.99 42.29 29.55 68.60 2.03 44.32 16 28 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 29 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 30 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 31 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.06 1.07 6.38 -2.39 -0.02 1.06 16 33 H 0.07 1.16 6.75 -2.39 -0.02 1.15 16 34 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.05 1.32 6.70 -2.39 -0.02 1.30 16 36 H 0.41 9.07 7.55 -92.71 -0.70 8.36 16 37 H 0.07 1.49 7.56 -2.39 -0.02 1.47 16 38 H 0.05 1.12 7.38 -2.39 -0.02 1.11 16 39 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.10 2.71 7.52 -2.91 -0.02 2.69 16 41 H 0.13 2.25 8.06 -2.91 -0.02 2.22 16 42 H 0.14 1.71 8.06 -2.91 -0.02 1.68 16 43 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 44 H 0.14 1.93 7.94 -2.91 -0.02 1.91 16 45 H 0.06 1.89 6.44 -2.39 -0.02 1.88 16 46 H 0.05 2.16 5.82 -2.39 -0.01 2.15 16 47 H 0.03 0.90 6.28 -2.38 -0.01 0.89 16 48 H 0.11 2.95 8.00 -2.38 -0.02 2.93 16 49 H 0.07 1.88 6.94 -2.39 -0.02 1.86 16 50 H 0.40 18.46 7.90 -92.71 -0.73 17.72 16 51 H 0.28 13.74 8.31 -92.71 -0.77 12.97 16 Total: -1.00 -69.99 409.27 0.89 -69.09 By element: Atomic # 1 Polarization: 45.74 SS G_CDS: -0.48 Total: 45.26 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: 6.76 Total: 6.54 kcal Atomic # 7 Polarization: -107.46 SS G_CDS: -7.33 Total: -114.79 kcal Atomic # 8 Polarization: -50.34 SS G_CDS: -0.09 Total: -50.43 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -69.99 0.89 -69.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485376092.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.705 kcal (2) G-P(sol) polarization free energy of solvation -69.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds